Wall clock time and date at job start Mon Mar 30 2020 04:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.86663 * 2 1 4 4 O 1.43742 * 109.87864 * 238.83905 * 2 1 3 5 5 C 1.44376 * 106.97690 * 267.08842 * 4 2 1 6 6 C 1.55353 * 103.49910 * 319.91073 * 5 4 2 7 7 C 1.54098 * 109.87942 * 121.00406 * 2 1 3 8 8 O 1.42905 * 110.48739 * 358.72269 * 7 2 1 9 9 C 1.52990 * 110.48928 * 236.20697 * 7 2 1 10 10 N 1.46900 * 109.47353 * 186.84586 * 9 7 2 11 11 C 1.46901 * 111.00119 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46948 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00480 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99971 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00089 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47397 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99435 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00040 * 180.02562 * 16 15 14 19 19 N 1.31506 * 119.99977 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99548 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47708 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47226 * 120.00483 * 20 18 16 23 23 H 1.48504 * 109.46991 * 239.99865 * 20 18 16 24 24 H 1.09003 * 109.47075 * 298.99044 * 1 2 3 25 25 H 1.08995 * 109.46843 * 58.99435 * 1 2 3 26 26 H 1.09003 * 109.46995 * 178.99211 * 1 2 3 27 27 H 1.09000 * 110.62015 * 78.43297 * 5 4 2 28 28 H 1.08995 * 110.62282 * 201.28676 * 5 4 2 29 29 H 1.09006 * 110.95676 * 278.92041 * 6 5 4 30 30 H 1.08994 * 111.00741 * 155.20972 * 6 5 4 31 31 H 0.96696 * 114.00036 * 178.15373 * 8 7 2 32 32 H 1.09008 * 109.47251 * 306.84118 * 9 7 2 33 33 H 1.09003 * 109.47841 * 66.84653 * 9 7 2 34 34 H 1.00903 * 110.99924 * 303.95428 * 10 9 7 35 35 H 1.09000 * 109.47331 * 299.99840 * 11 10 9 36 36 H 1.08997 * 109.46866 * 60.00512 * 11 10 9 37 37 H 0.97003 * 120.00004 * 0.02562 * 14 12 11 38 38 H 1.09000 * 109.47125 * 300.00114 * 15 14 12 39 39 H 1.09006 * 109.47218 * 59.99945 * 15 14 12 40 40 H 0.97003 * 119.99912 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1567 5 6 2.2281 -2.0723 -0.7620 6 6 2.8347 -1.9515 0.6632 7 6 2.0541 -0.7465 1.2421 8 8 0.9656 -1.1976 2.0507 9 6 2.9858 0.1546 2.0549 10 7 3.5993 -0.6254 3.1381 11 6 4.5029 0.2091 3.9412 12 6 5.1125 -0.6236 5.0394 13 8 4.8224 -1.7966 5.1432 14 7 5.9793 -0.0645 5.9069 15 6 6.5715 -0.8739 6.9749 16 6 7.4986 -0.0179 7.7987 17 1 7.6330 1.0249 7.5517 18 6 8.1753 -0.5659 8.8677 19 7 8.0121 -1.8358 9.1681 20 14 9.3240 0.4954 9.8892 21 1 9.3316 1.8786 9.3490 22 1 8.8556 0.5174 11.2983 23 1 10.6977 -0.0660 9.8330 24 1 -0.3633 0.4981 0.8989 25 1 -0.3633 0.5294 -0.8808 26 1 -0.3633 -1.0275 -0.0181 27 1 1.2814 -2.6117 -0.7320 28 1 2.9275 -2.5639 -1.4382 29 1 3.9023 -1.7367 0.6156 30 1 2.6463 -2.8532 1.2457 31 1 1.2372 -1.6987 2.8319 32 1 3.7664 0.5505 1.4052 33 1 2.4139 0.9794 2.4801 34 1 2.8944 -1.0566 3.7172 35 1 5.2940 0.6051 3.3043 36 1 3.9419 1.0345 4.3794 37 1 6.2106 0.8739 5.8246 38 1 5.7805 -1.2702 7.6115 39 1 7.1328 -1.6991 6.5366 40 1 8.4879 -2.2213 9.9204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227144024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:26 Heat of formation + Delta-G solvation = -136.133169 kcal Electronic energy + Delta-G solvation = -21029.580457 eV Core-core repulsion = 17651.091638 eV Total energy + Delta-G solvation = -3378.488819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48325 -38.89769 -36.91548 -35.03304 -34.14435 -32.36757 -31.57047 -31.31391 -28.85009 -27.33512 -25.56356 -23.54129 -22.41544 -21.78456 -20.71513 -19.76364 -17.75230 -16.92823 -16.75777 -16.50327 -15.77469 -15.66300 -15.21587 -14.69721 -14.45570 -14.28427 -14.08532 -13.83613 -13.40716 -13.06810 -13.03771 -12.78148 -12.35810 -12.07125 -12.02680 -11.94886 -11.67352 -11.49430 -11.35424 -10.99126 -10.92965 -10.71554 -10.35517 -10.25493 -9.90273 -9.41852 -9.12359 -8.77773 -8.56503 -7.92455 -6.20197 -4.27264 3.20941 3.28040 3.30661 3.31126 3.55505 3.65981 3.78821 4.19978 4.35016 4.43010 4.45409 4.65336 4.90252 5.00387 5.09846 5.16057 5.18036 5.26424 5.37012 5.39649 5.42114 5.44139 5.54069 5.57636 5.79381 5.85126 5.91856 6.09690 6.57982 6.66744 7.13642 7.27333 7.35964 7.39064 7.47699 7.63069 7.93300 8.57885 8.74325 9.05250 9.39605 10.90049 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.050977 B = 0.002800 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.131450 B = 9997.877055 C =10101.078746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.087 3.913 3 H 0.100 0.900 4 O -0.371 6.371 5 C 0.044 3.956 6 C -0.164 4.164 7 C 0.107 3.893 8 O -0.551 6.551 9 C 0.039 3.961 10 N -0.668 5.668 11 C 0.041 3.959 12 C 0.496 3.504 13 O -0.545 6.545 14 N -0.713 5.713 15 C 0.250 3.750 16 C -0.544 4.544 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.380 0.620 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.347 0.653 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.390 0.610 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.408 4.867 -17.114 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.029 3.971 3 H 0.118 0.882 4 O -0.290 6.290 5 C -0.032 4.032 6 C -0.202 4.202 7 C 0.065 3.935 8 O -0.358 6.358 9 C -0.091 4.091 10 N -0.302 5.302 11 C -0.092 4.092 12 C 0.280 3.720 13 O -0.423 6.423 14 N -0.362 5.362 15 C 0.130 3.870 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.166 0.834 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.223 0.777 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.352 4.007 -17.935 22.142 hybrid contribution 0.524 1.108 1.815 2.190 sum -11.827 5.115 -16.120 20.637 Atomic orbital electron populations 1.21935 0.94502 1.02982 1.01784 1.22677 0.95163 0.96065 0.83220 0.88236 1.88925 1.86126 1.21222 1.32724 1.23647 0.99942 0.83967 0.95641 1.23697 1.01550 0.98785 0.96202 1.22521 0.86027 0.93788 0.91154 1.86536 1.33018 1.75480 1.40741 1.22631 0.97155 0.94871 0.94468 1.60101 1.23231 1.32421 1.14424 1.21847 0.97525 0.94717 0.95094 1.20311 0.80541 0.88288 0.82832 1.90662 1.61743 1.16467 1.73403 1.46454 1.44261 1.14211 1.31308 1.19103 0.93034 0.91072 0.83823 1.21260 1.26601 0.96636 1.13698 0.91857 1.24958 0.96791 0.95134 0.97169 1.69981 1.41977 1.11850 1.28438 0.86358 0.80365 0.80250 0.79912 1.19636 1.20788 1.20759 0.91193 0.92545 0.91929 0.92128 0.88885 0.88923 0.89339 0.77048 0.89553 0.94073 0.83375 0.88402 0.92627 0.77746 0.95591 0.95502 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.56 37.16 0.32 -1.10 16 2 C 0.09 0.84 3.76 -26.15 -0.10 0.74 16 3 H 0.10 0.85 7.69 -51.93 -0.40 0.45 16 4 O -0.37 -4.10 11.19 -35.23 -0.39 -4.49 16 5 C 0.04 0.42 7.67 38.41 0.29 0.71 16 6 C -0.16 -1.60 6.09 -24.53 -0.15 -1.75 16 7 C 0.11 1.01 1.14 -89.10 -0.10 0.91 16 8 O -0.55 -5.32 11.21 -35.23 -0.39 -5.72 16 9 C 0.04 0.37 4.58 -3.83 -0.02 0.35 16 10 N -0.67 -8.03 5.71 -115.06 -0.66 -8.69 16 11 C 0.04 0.53 6.17 -4.98 -0.03 0.50 16 12 C 0.50 9.38 7.87 -10.99 -0.09 9.29 16 13 O -0.54 -12.53 16.20 5.56 0.09 -12.44 16 14 N -0.71 -14.46 5.55 -61.47 -0.34 -14.80 16 15 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 16 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 20 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 27 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.98 7.87 -51.93 -0.41 0.57 16 30 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.38 3.05 7.70 45.56 0.35 3.40 16 32 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.35 4.22 7.05 -39.29 -0.28 3.94 16 35 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.39 6.71 8.32 -40.82 -0.34 6.37 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 331.60 15.07 5.00 5.00 Total: -1.00 -32.27 331.60 -6.95 -39.22 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.65 Total: 8.55 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.32 Total: 2.91 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.26 Total: -48.64 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.70 Total: -22.65 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.27 -6.95 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227144024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.912 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds