Wall clock time and date at job start Mon Mar 30 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.86663 * 2 1 4 4 O 1.43742 * 109.87864 * 238.83905 * 2 1 3 5 5 C 1.44376 * 106.97690 * 267.08842 * 4 2 1 6 6 C 1.55353 * 103.49910 * 319.91073 * 5 4 2 7 7 C 1.54098 * 109.87942 * 121.00406 * 2 1 3 8 8 O 1.42905 * 110.48739 * 358.72269 * 7 2 1 9 9 C 1.52990 * 110.48928 * 236.20697 * 7 2 1 10 10 N 1.46900 * 109.47353 * 186.84586 * 9 7 2 11 11 C 1.46901 * 111.00119 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46948 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00480 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99971 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00089 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47397 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99435 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00040 * 180.02562 * 16 15 14 19 19 N 1.31506 * 119.99977 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99548 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47708 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47226 * 120.00483 * 20 18 16 23 23 H 1.48504 * 109.46991 * 239.99865 * 20 18 16 24 24 H 1.09003 * 109.47075 * 298.99044 * 1 2 3 25 25 H 1.08995 * 109.46843 * 58.99435 * 1 2 3 26 26 H 1.09003 * 109.46995 * 178.99211 * 1 2 3 27 27 H 1.09000 * 110.62015 * 78.43297 * 5 4 2 28 28 H 1.08995 * 110.62282 * 201.28676 * 5 4 2 29 29 H 1.09006 * 110.95676 * 278.92041 * 6 5 4 30 30 H 1.08994 * 111.00741 * 155.20972 * 6 5 4 31 31 H 0.96696 * 114.00036 * 178.15373 * 8 7 2 32 32 H 1.09008 * 109.47251 * 306.84118 * 9 7 2 33 33 H 1.09003 * 109.47841 * 66.84653 * 9 7 2 34 34 H 1.00903 * 110.99924 * 303.95428 * 10 9 7 35 35 H 1.09000 * 109.47331 * 299.99840 * 11 10 9 36 36 H 1.08997 * 109.46866 * 60.00512 * 11 10 9 37 37 H 0.97003 * 120.00004 * 0.02562 * 14 12 11 38 38 H 1.09000 * 109.47125 * 300.00114 * 15 14 12 39 39 H 1.09006 * 109.47218 * 59.99945 * 15 14 12 40 40 H 0.97003 * 119.99912 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1567 5 6 2.2281 -2.0723 -0.7620 6 6 2.8347 -1.9515 0.6632 7 6 2.0541 -0.7465 1.2421 8 8 0.9656 -1.1976 2.0507 9 6 2.9858 0.1546 2.0549 10 7 3.5993 -0.6254 3.1381 11 6 4.5029 0.2091 3.9412 12 6 5.1125 -0.6236 5.0394 13 8 4.8224 -1.7966 5.1432 14 7 5.9793 -0.0645 5.9069 15 6 6.5715 -0.8739 6.9749 16 6 7.4986 -0.0179 7.7987 17 1 7.6330 1.0249 7.5517 18 6 8.1753 -0.5659 8.8677 19 7 8.0121 -1.8358 9.1681 20 14 9.3240 0.4954 9.8892 21 1 9.3316 1.8786 9.3490 22 1 8.8556 0.5174 11.2983 23 1 10.6977 -0.0660 9.8330 24 1 -0.3633 0.4981 0.8989 25 1 -0.3633 0.5294 -0.8808 26 1 -0.3633 -1.0275 -0.0181 27 1 1.2814 -2.6117 -0.7320 28 1 2.9275 -2.5639 -1.4382 29 1 3.9023 -1.7367 0.6156 30 1 2.6463 -2.8532 1.2457 31 1 1.2372 -1.6987 2.8319 32 1 3.7664 0.5505 1.4052 33 1 2.4139 0.9794 2.4801 34 1 2.8944 -1.0566 3.7172 35 1 5.2940 0.6051 3.3043 36 1 3.9419 1.0345 4.3794 37 1 6.2106 0.8739 5.8246 38 1 5.7805 -1.2702 7.6115 39 1 7.1328 -1.6991 6.5366 40 1 8.4879 -2.2213 9.9204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227144024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:25 Heat of formation + Delta-G solvation = -164.125921 kcal Electronic energy + Delta-G solvation = -21030.794314 eV Core-core repulsion = 17651.091638 eV Total energy + Delta-G solvation = -3379.702676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26442 -40.43739 -37.76610 -36.25297 -35.75860 -34.33646 -32.33389 -32.11875 -30.17267 -28.79077 -26.75639 -24.68477 -23.96278 -22.61833 -21.55973 -21.28168 -19.16979 -18.09547 -17.65843 -17.49831 -17.20055 -16.94964 -16.76206 -16.03108 -15.65556 -15.43233 -15.10612 -14.83940 -14.39665 -14.33232 -14.14131 -13.98220 -13.73761 -13.62105 -13.15476 -12.89197 -12.80108 -12.77255 -12.64504 -12.39422 -12.22399 -12.09157 -11.49307 -11.45453 -11.03909 -10.81809 -10.71500 -10.63523 -9.82281 -9.46546 -8.29696 -6.46042 1.43393 1.44133 1.57595 1.79450 2.27060 2.46294 2.90136 3.05218 3.05539 3.15847 3.64329 3.67591 3.88028 3.98488 4.17326 4.25862 4.35583 4.38818 4.41411 4.52190 4.63892 4.69183 4.72490 4.85232 5.07120 5.10226 5.11871 5.13273 5.24793 5.37410 5.49164 5.66379 5.81884 5.84193 5.85760 6.21384 6.65850 6.66898 6.94236 7.23753 7.52164 8.82690 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.050977 B = 0.002800 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.131450 B = 9997.877055 C =10101.078746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.083 3.917 3 H 0.114 0.886 4 O -0.387 6.387 5 C 0.044 3.956 6 C -0.163 4.163 7 C 0.109 3.891 8 O -0.558 6.558 9 C 0.045 3.955 10 N -0.681 5.681 11 C 0.058 3.942 12 C 0.492 3.508 13 O -0.591 6.591 14 N -0.709 5.709 15 C 0.267 3.733 16 C -0.555 4.555 17 H 0.084 0.916 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.984 3.016 21 H -0.252 1.252 22 H -0.279 1.279 23 H -0.280 1.280 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.386 0.614 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.344 0.656 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.409 0.591 38 H -0.013 1.013 39 H -0.014 1.014 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.261 7.406 -17.772 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 H 0.132 0.868 4 O -0.306 6.306 5 C -0.032 4.032 6 C -0.201 4.201 7 C 0.068 3.932 8 O -0.365 6.365 9 C -0.084 4.084 10 N -0.315 5.315 11 C -0.074 4.074 12 C 0.279 3.721 13 O -0.472 6.472 14 N -0.360 5.360 15 C 0.144 3.856 16 C -0.593 4.593 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.807 3.193 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.236 0.764 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.104 0.896 37 H 0.244 0.756 38 H 0.005 0.995 39 H 0.004 0.996 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.222 6.594 -18.631 23.238 hybrid contribution 0.413 0.252 1.966 2.025 sum -11.810 6.846 -16.665 21.542 Atomic orbital electron populations 1.21889 0.94331 1.02359 1.02176 1.22814 0.95344 0.96621 0.82769 0.86833 1.88906 1.86273 1.21898 1.33545 1.23720 1.00313 0.83575 0.95642 1.23652 1.01069 0.98874 0.96530 1.22497 0.85917 0.93627 0.91182 1.86523 1.33289 1.75627 1.41105 1.22627 0.97359 0.94759 0.93637 1.60077 1.23566 1.33098 1.14745 1.21750 0.98404 0.93948 0.93326 1.21418 0.79253 0.88235 0.83171 1.90642 1.62964 1.18986 1.74597 1.46183 1.44656 1.14652 1.30502 1.18512 0.91609 0.90864 0.84618 1.21663 1.26343 0.97539 1.13710 0.89771 1.26065 0.98592 0.96422 0.98609 1.70140 1.43391 1.14162 1.29312 0.85121 0.77478 0.78936 0.77737 1.17569 1.20513 1.20545 0.90985 0.91920 0.93051 0.91964 0.87760 0.89763 0.89773 0.76369 0.88707 0.92795 0.83653 0.85991 0.89606 0.75584 0.99484 0.99643 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.56 71.98 0.62 -1.92 16 2 C 0.08 1.44 3.76 30.97 0.12 1.55 16 3 H 0.11 1.63 7.69 -2.39 -0.02 1.62 16 4 O -0.39 -7.99 11.19 -148.98 -1.67 -9.66 16 5 C 0.04 0.77 7.67 72.79 0.56 1.33 16 6 C -0.16 -3.03 6.09 32.02 0.19 -2.84 16 7 C 0.11 1.90 1.14 -9.81 -0.01 1.89 16 8 O -0.56 -10.08 11.21 -148.98 -1.67 -11.75 16 9 C 0.05 0.75 4.58 86.30 0.40 1.14 16 10 N -0.68 -15.08 5.71 -517.94 -2.96 -18.04 16 11 C 0.06 1.34 6.17 85.56 0.53 1.87 16 12 C 0.49 18.36 7.87 87.66 0.69 19.05 16 13 O -0.59 -27.86 16.20 -3.03 -0.05 -27.91 16 14 N -0.71 -28.55 5.55 -466.77 -2.59 -31.14 16 15 C 0.27 14.40 5.43 85.63 0.46 14.86 16 16 C -0.55 -29.69 9.28 25.60 0.24 -29.45 16 17 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 18 C 0.00 0.14 5.46 84.66 0.46 0.61 16 19 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 20 Si 0.98 41.79 29.54 68.60 2.03 43.82 16 21 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 24 H 0.07 1.18 7.85 -2.39 -0.02 1.16 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 0.97 7.87 -2.39 -0.02 0.95 16 27 H 0.06 1.07 8.11 -2.39 -0.02 1.05 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.71 7.87 -2.38 -0.02 1.69 16 30 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 31 H 0.39 5.89 7.70 -74.06 -0.57 5.32 16 32 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.34 7.97 7.05 -89.69 -0.63 7.33 16 35 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 13.30 8.32 -92.71 -0.77 12.53 16 38 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 39 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 40 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -71.63 331.60 -3.29 -74.91 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.91 Total: 27.20 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 4.25 Total: 8.09 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -5.26 Total: -104.71 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -3.39 Total: -49.31 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -71.63 -3.29 -74.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227144024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.213 kcal (2) G-P(sol) polarization free energy of solvation -71.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds