Wall clock time and date at job start Mon Mar 30 2020 04:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87142 * 2 1 4 4 O 1.43742 * 109.87959 * 121.00968 * 2 1 3 5 5 C 1.44383 * 106.97467 * 145.94119 * 4 2 1 6 6 C 1.54997 * 103.48985 * 319.93638 * 5 4 2 7 7 C 1.54107 * 109.88092 * 238.84206 * 2 1 3 8 8 O 1.42899 * 110.48824 * 119.86493 * 7 2 1 9 9 C 1.53005 * 110.48328 * 357.22383 * 7 2 1 10 10 N 1.46901 * 109.46603 * 185.00124 * 9 7 2 11 11 C 1.46904 * 110.99475 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46978 * 179.97438 * 11 10 9 13 13 O 1.21285 * 120.00064 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00213 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00067 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47303 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99700 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00392 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00357 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99679 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47449 * 90.00272 * 20 18 16 22 22 H 1.48504 * 109.46938 * 210.00010 * 20 18 16 23 23 H 1.48499 * 109.47550 * 329.99949 * 20 18 16 24 24 H 1.09002 * 109.47153 * 300.44256 * 1 2 3 25 25 H 1.09001 * 109.46832 * 180.44447 * 1 2 3 26 26 H 1.09004 * 109.47261 * 60.44429 * 1 2 3 27 27 H 1.08992 * 110.62177 * 78.43718 * 5 4 2 28 28 H 1.09005 * 110.61746 * 201.28502 * 5 4 2 29 29 H 1.08999 * 110.90793 * 155.22275 * 6 5 4 30 30 H 1.08996 * 110.91021 * 278.82792 * 6 5 4 31 31 H 0.96700 * 114.00183 * 179.97438 * 8 7 2 32 32 H 1.09003 * 109.46615 * 304.99628 * 9 7 2 33 33 H 1.08994 * 109.47268 * 64.99859 * 9 7 2 34 34 H 1.00897 * 111.00211 * 303.94777 * 10 9 7 35 35 H 1.09000 * 109.47507 * 299.99726 * 11 10 9 36 36 H 1.09000 * 109.47269 * 60.00271 * 11 10 9 37 37 H 0.96998 * 119.99797 * 0.02562 * 14 12 11 38 38 H 1.09003 * 109.47660 * 300.00387 * 15 14 12 39 39 H 1.09002 * 109.47160 * 60.00410 * 15 14 12 40 40 H 0.96997 * 120.00228 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6964 1.1586 5 6 3.2380 -1.3631 0.7665 6 6 2.9196 -1.8923 -0.6551 7 6 2.0540 -0.7498 -1.2402 8 8 2.8510 0.1175 -2.0493 9 6 0.8898 -1.3216 -2.0517 10 7 1.4159 -2.1308 -3.1592 11 6 0.3239 -2.6978 -3.9618 12 6 0.9008 -3.5190 -5.0860 13 8 2.1033 -3.6222 -5.2065 14 7 0.0806 -4.1397 -5.9569 15 6 0.6415 -4.9375 -7.0501 16 6 -0.4786 -5.5193 -7.8735 17 1 -1.5056 -5.3156 -7.6086 18 6 -0.1924 -6.3126 -8.9642 19 7 -1.1700 -6.8208 -9.6824 20 14 1.5839 -6.6656 -9.4219 21 1 2.0409 -7.8932 -8.7221 22 1 1.6865 -6.8655 -10.8898 23 1 2.4365 -5.5190 -9.0177 24 1 -0.3633 0.5207 0.8860 25 1 -0.3633 -1.0277 0.0080 26 1 -0.3634 0.5069 -0.8940 27 1 4.0685 -0.6579 0.7364 28 1 3.4600 -2.1872 1.4445 29 1 3.8332 -2.0240 -1.2348 30 1 2.3541 -2.8227 -0.6062 31 1 3.2073 -0.3031 -2.8438 32 1 0.2703 -1.9460 -1.4079 33 1 0.2898 -0.5044 -2.4518 34 1 2.0451 -1.5911 -3.7343 35 1 -0.2993 -3.3318 -3.3311 36 1 -0.2804 -1.8904 -4.3752 37 1 -0.8810 -4.0575 -5.8604 38 1 1.2639 -4.3028 -7.6810 39 1 1.2467 -5.7447 -6.6375 40 1 -0.9686 -7.3786 -10.4499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227144028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:28 Heat of formation + Delta-G solvation = -128.897761 kcal Electronic energy + Delta-G solvation = -21160.444933 eV Core-core repulsion = 17782.269864 eV Total energy + Delta-G solvation = -3378.175069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.57269 -39.04736 -36.97844 -35.12196 -34.27467 -32.48530 -32.35451 -31.29682 -28.88588 -27.20185 -25.52869 -23.96309 -22.62132 -21.90282 -20.20082 -19.86151 -17.84304 -17.24221 -16.71220 -16.31782 -15.88546 -15.82547 -15.60328 -15.34519 -14.58592 -14.37085 -14.18520 -13.66994 -13.39136 -13.08671 -12.98387 -12.76563 -12.59616 -12.40894 -12.32919 -11.98302 -11.80840 -11.67518 -11.44417 -11.06354 -10.79730 -10.76264 -10.30875 -10.00903 -9.95572 -9.54031 -9.28883 -8.81916 -8.62832 -8.20165 -6.25186 -4.27860 3.14990 3.24342 3.30613 3.38701 3.47365 3.55671 3.69259 4.15233 4.29998 4.34962 4.37948 4.65972 4.84909 4.92183 4.98325 5.09959 5.14715 5.21075 5.25027 5.29812 5.32546 5.36079 5.45117 5.49468 5.71297 5.74836 5.83895 5.86578 6.53115 6.58519 6.78601 7.02289 7.07310 7.16804 7.30018 7.34667 8.08778 8.46044 8.70776 8.87137 9.34720 10.86752 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.041332 B = 0.003109 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.278187 B = 9004.375092 C = 9324.006822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.088 3.912 3 H 0.080 0.920 4 O -0.372 6.372 5 C 0.045 3.955 6 C -0.166 4.166 7 C 0.106 3.894 8 O -0.555 6.555 9 C 0.036 3.964 10 N -0.671 5.671 11 C 0.042 3.958 12 C 0.499 3.501 13 O -0.547 6.547 14 N -0.706 5.706 15 C 0.222 3.778 16 C -0.545 4.545 17 H 0.079 0.921 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.878 3.122 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.261 1.261 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.383 0.617 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.345 0.655 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.396 0.604 38 H 0.025 0.975 39 H 0.021 0.979 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 13.213 18.675 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.029 3.971 3 H 0.098 0.902 4 O -0.291 6.291 5 C -0.031 4.031 6 C -0.203 4.203 7 C 0.064 3.936 8 O -0.363 6.363 9 C -0.093 4.093 10 N -0.304 5.304 11 C -0.091 4.091 12 C 0.283 3.717 13 O -0.425 6.425 14 N -0.355 5.355 15 C 0.099 3.901 16 C -0.583 4.583 17 H 0.097 0.903 18 C -0.126 4.126 19 N -0.529 5.529 20 Si 0.704 3.296 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.185 1.185 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.232 0.768 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.165 0.835 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.230 0.770 38 H 0.042 0.958 39 H 0.039 0.961 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.637 12.862 19.446 23.771 hybrid contribution 0.266 0.050 -1.512 1.536 sum 4.903 12.912 17.934 22.636 Atomic orbital electron populations 1.22052 0.93058 1.03272 1.02824 1.22548 0.95069 0.96233 0.83209 0.90214 1.88907 1.39979 1.67866 1.32366 1.23578 0.87502 0.96376 0.95658 1.23643 1.01254 0.99143 0.96299 1.22562 0.90433 0.89428 0.91160 1.86499 1.69577 1.40645 1.39549 1.22803 0.96346 0.96220 0.93923 1.60116 1.17769 1.39373 1.13185 1.21821 0.93758 0.98711 0.94796 1.20370 0.87439 0.80868 0.83043 1.90655 1.14857 1.62896 1.74116 1.46169 1.09764 1.50100 1.29492 1.19484 0.95467 0.90423 0.84692 1.21089 0.93494 1.31753 1.11950 0.90263 1.24802 0.97625 0.94714 0.95497 1.69877 1.31812 1.33103 1.18137 0.86805 0.85089 0.79789 0.77917 1.19813 1.20882 1.18540 0.91499 0.91247 0.90798 0.92043 0.88796 0.89336 0.88970 0.76806 0.89073 0.93753 0.83490 0.88173 0.92386 0.77025 0.95759 0.96122 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.41 37.16 0.31 -0.89 16 2 C 0.09 0.84 3.88 -26.15 -0.10 0.74 16 3 H 0.08 0.80 7.97 -51.93 -0.41 0.39 16 4 O -0.37 -4.05 11.19 -35.23 -0.39 -4.44 16 5 C 0.05 0.41 7.72 38.21 0.29 0.71 16 6 C -0.17 -1.57 6.12 -24.72 -0.15 -1.72 16 7 C 0.11 1.00 1.17 -89.09 -0.10 0.90 16 8 O -0.56 -5.54 12.97 -35.23 -0.46 -6.00 16 9 C 0.04 0.34 3.60 -3.82 -0.01 0.32 16 10 N -0.67 -7.67 5.76 -115.05 -0.66 -8.33 16 11 C 0.04 0.51 6.17 -4.97 -0.03 0.48 16 12 C 0.50 8.88 7.87 -10.99 -0.09 8.80 16 13 O -0.55 -11.79 16.20 5.55 0.09 -11.70 16 14 N -0.71 -13.67 5.55 -61.47 -0.34 -14.01 16 15 C 0.22 5.34 4.50 -5.19 -0.02 5.32 16 16 C -0.55 -14.73 9.83 -34.44 -0.34 -15.07 16 17 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 18 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 19 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 20 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.52 6.53 -51.93 -0.34 0.18 16 26 H 0.07 0.50 7.01 -51.93 -0.36 0.14 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 31 H 0.38 3.08 7.58 45.56 0.35 3.43 16 32 H 0.09 0.81 6.51 -51.93 -0.34 0.47 16 33 H 0.04 0.39 7.04 -51.93 -0.37 0.02 16 34 H 0.35 3.99 6.95 -39.29 -0.27 3.71 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.40 6.68 8.32 -40.82 -0.34 6.34 16 38 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 39 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 324.08 15.07 4.88 4.88 Total: -1.00 -32.54 324.08 -6.49 -39.03 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.38 Total: 7.84 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -0.34 Total: 1.66 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.23 Total: -47.83 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.76 Total: -22.14 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.54 -6.49 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227144028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.865 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds