Wall clock time and date at job start Mon Mar 30 2020 04:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87142 * 2 1 4 4 O 1.43742 * 109.87959 * 121.00968 * 2 1 3 5 5 C 1.44383 * 106.97467 * 145.94119 * 4 2 1 6 6 C 1.54997 * 103.48985 * 319.93638 * 5 4 2 7 7 C 1.54107 * 109.88092 * 238.84206 * 2 1 3 8 8 O 1.42899 * 110.48824 * 119.86493 * 7 2 1 9 9 C 1.53005 * 110.48328 * 357.22383 * 7 2 1 10 10 N 1.46901 * 109.46603 * 185.00124 * 9 7 2 11 11 C 1.46904 * 110.99475 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46978 * 179.97438 * 11 10 9 13 13 O 1.21285 * 120.00064 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00213 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00067 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47303 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99700 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00392 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00357 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99679 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47449 * 90.00272 * 20 18 16 22 22 H 1.48504 * 109.46938 * 210.00010 * 20 18 16 23 23 H 1.48499 * 109.47550 * 329.99949 * 20 18 16 24 24 H 1.09002 * 109.47153 * 300.44256 * 1 2 3 25 25 H 1.09001 * 109.46832 * 180.44447 * 1 2 3 26 26 H 1.09004 * 109.47261 * 60.44429 * 1 2 3 27 27 H 1.08992 * 110.62177 * 78.43718 * 5 4 2 28 28 H 1.09005 * 110.61746 * 201.28502 * 5 4 2 29 29 H 1.08999 * 110.90793 * 155.22275 * 6 5 4 30 30 H 1.08996 * 110.91021 * 278.82792 * 6 5 4 31 31 H 0.96700 * 114.00183 * 179.97438 * 8 7 2 32 32 H 1.09003 * 109.46615 * 304.99628 * 9 7 2 33 33 H 1.08994 * 109.47268 * 64.99859 * 9 7 2 34 34 H 1.00897 * 111.00211 * 303.94777 * 10 9 7 35 35 H 1.09000 * 109.47507 * 299.99726 * 11 10 9 36 36 H 1.09000 * 109.47269 * 60.00271 * 11 10 9 37 37 H 0.96998 * 119.99797 * 0.02562 * 14 12 11 38 38 H 1.09003 * 109.47660 * 300.00387 * 15 14 12 39 39 H 1.09002 * 109.47160 * 60.00410 * 15 14 12 40 40 H 0.96997 * 120.00228 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6964 1.1586 5 6 3.2380 -1.3631 0.7665 6 6 2.9196 -1.8923 -0.6551 7 6 2.0540 -0.7498 -1.2402 8 8 2.8510 0.1175 -2.0493 9 6 0.8898 -1.3216 -2.0517 10 7 1.4159 -2.1308 -3.1592 11 6 0.3239 -2.6978 -3.9618 12 6 0.9008 -3.5190 -5.0860 13 8 2.1033 -3.6222 -5.2065 14 7 0.0806 -4.1397 -5.9569 15 6 0.6415 -4.9375 -7.0501 16 6 -0.4786 -5.5193 -7.8735 17 1 -1.5056 -5.3156 -7.6086 18 6 -0.1924 -6.3126 -8.9642 19 7 -1.1700 -6.8208 -9.6824 20 14 1.5839 -6.6656 -9.4219 21 1 2.0409 -7.8932 -8.7221 22 1 1.6865 -6.8655 -10.8898 23 1 2.4365 -5.5190 -9.0177 24 1 -0.3633 0.5207 0.8860 25 1 -0.3633 -1.0277 0.0080 26 1 -0.3634 0.5069 -0.8940 27 1 4.0685 -0.6579 0.7364 28 1 3.4600 -2.1872 1.4445 29 1 3.8332 -2.0240 -1.2348 30 1 2.3541 -2.8227 -0.6062 31 1 3.2073 -0.3031 -2.8438 32 1 0.2703 -1.9460 -1.4079 33 1 0.2898 -0.5044 -2.4518 34 1 2.0451 -1.5911 -3.7343 35 1 -0.2993 -3.3318 -3.3311 36 1 -0.2804 -1.8904 -4.3752 37 1 -0.8810 -4.0575 -5.8604 38 1 1.2639 -4.3028 -7.6810 39 1 1.2467 -5.7447 -6.6375 40 1 -0.9686 -7.3786 -10.4499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227144028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:27 Heat of formation + Delta-G solvation = -157.664938 kcal Electronic energy + Delta-G solvation = -21161.692371 eV Core-core repulsion = 17782.269864 eV Total energy + Delta-G solvation = -3379.422507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33071 -40.47766 -37.79902 -36.28089 -35.78372 -34.39848 -33.16348 -32.05911 -30.47918 -28.43061 -26.35801 -24.94618 -23.71648 -23.29779 -21.51987 -20.80232 -19.26963 -18.36095 -17.89171 -17.31476 -17.04961 -16.90919 -16.73647 -16.37455 -15.94569 -15.73376 -15.29545 -14.87812 -14.51758 -14.41671 -14.11816 -14.09924 -13.66521 -13.44059 -13.24451 -13.06128 -12.92783 -12.70991 -12.54688 -12.48736 -12.16054 -11.93669 -11.65908 -11.48768 -11.07489 -10.92257 -10.77430 -10.66760 -9.92074 -9.46269 -8.40375 -6.47391 1.32797 1.35241 1.47204 1.75347 2.27204 2.31010 2.83221 2.95265 2.98495 3.13471 3.59938 3.65238 3.88413 3.97724 4.14395 4.22753 4.32314 4.36391 4.44526 4.53054 4.59474 4.64890 4.70567 4.79146 4.82753 5.02963 5.03668 5.06670 5.10628 5.26246 5.26707 5.53011 5.76283 5.82723 6.09567 6.21370 6.54341 6.62744 6.87378 7.15902 7.43633 8.74375 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.041332 B = 0.003109 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.278187 B = 9004.375092 C = 9324.006822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.083 3.917 3 H 0.072 0.928 4 O -0.388 6.388 5 C 0.043 3.957 6 C -0.164 4.164 7 C 0.107 3.893 8 O -0.566 6.566 9 C 0.043 3.957 10 N -0.682 5.682 11 C 0.055 3.945 12 C 0.497 3.503 13 O -0.586 6.586 14 N -0.707 5.707 15 C 0.233 3.767 16 C -0.547 4.547 17 H 0.060 0.940 18 C 0.025 3.975 19 N -0.932 5.932 20 Si 0.938 3.062 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.260 1.260 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.389 0.611 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.344 0.656 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.409 0.591 38 H 0.012 0.988 39 H 0.010 0.990 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 13.916 19.625 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 H 0.090 0.910 4 O -0.308 6.308 5 C -0.033 4.033 6 C -0.202 4.202 7 C 0.065 3.935 8 O -0.374 6.374 9 C -0.085 4.085 10 N -0.315 5.315 11 C -0.077 4.077 12 C 0.284 3.716 13 O -0.466 6.466 14 N -0.358 5.358 15 C 0.109 3.891 16 C -0.585 4.585 17 H 0.078 0.922 18 C -0.175 4.175 19 N -0.571 5.571 20 Si 0.762 3.238 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.184 1.184 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.240 0.760 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.104 0.896 37 H 0.245 0.755 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.781 13.584 20.422 24.989 hybrid contribution 0.192 -0.124 -1.753 1.768 sum 4.974 13.459 18.669 23.546 Atomic orbital electron populations 1.22061 0.91573 1.03729 1.03592 1.22648 0.96291 0.95655 0.82905 0.91049 1.88889 1.40586 1.68119 1.33225 1.23678 0.87101 0.96751 0.95790 1.23605 1.01113 0.98922 0.96534 1.22567 0.90501 0.89266 0.91143 1.86484 1.69774 1.41120 1.40024 1.22795 0.96237 0.96378 0.93127 1.60097 1.17784 1.40193 1.13475 1.21754 0.93913 0.98909 0.93083 1.21319 0.86762 0.80134 0.83343 1.90637 1.16735 1.64120 1.75132 1.46019 1.10719 1.50100 1.28948 1.19059 0.94152 0.90332 0.85568 1.21314 0.93534 1.31416 1.12193 0.92212 1.25613 1.01529 0.94716 0.95639 1.69980 1.33901 1.34228 1.18980 0.85849 0.80221 0.79696 0.78054 1.19091 1.19915 1.18391 0.91217 0.90867 0.89622 0.91897 0.87514 0.89576 0.89557 0.76009 0.88271 0.92530 0.83679 0.85989 0.89644 0.75541 0.96986 0.97247 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.41 71.98 0.61 -1.41 16 2 C 0.08 1.47 3.88 30.97 0.12 1.59 16 3 H 0.07 1.36 7.97 -2.39 -0.02 1.34 16 4 O -0.39 -7.97 11.19 -148.98 -1.67 -9.63 16 5 C 0.04 0.73 7.72 72.67 0.56 1.29 16 6 C -0.16 -2.90 6.12 31.89 0.20 -2.70 16 7 C 0.11 1.83 1.17 -9.80 -0.01 1.82 16 8 O -0.57 -10.47 12.97 -148.98 -1.93 -12.41 16 9 C 0.04 0.68 3.60 86.30 0.31 0.99 16 10 N -0.68 -13.91 5.76 -517.92 -2.99 -16.89 16 11 C 0.06 1.18 6.17 85.56 0.53 1.71 16 12 C 0.50 16.87 7.87 87.66 0.69 17.56 16 13 O -0.59 -24.69 16.20 -3.04 -0.05 -24.74 16 14 N -0.71 -26.54 5.55 -466.78 -2.59 -29.13 16 15 C 0.23 11.12 4.50 85.63 0.38 11.51 16 16 C -0.55 -29.64 9.83 25.60 0.25 -29.39 16 17 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 18 C 0.03 1.41 5.47 84.65 0.46 1.88 16 19 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 20 Si 0.94 43.59 27.47 68.60 1.88 45.48 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.26 -11.92 6.54 99.48 0.65 -11.26 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.91 6.53 -2.39 -0.02 0.90 16 26 H 0.09 0.92 7.01 -2.38 -0.02 0.90 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.09 1.55 8.08 -2.39 -0.02 1.53 16 30 H 0.09 1.63 7.87 -2.39 -0.02 1.61 16 31 H 0.39 5.80 7.58 -74.06 -0.56 5.23 16 32 H 0.10 1.43 6.51 -2.39 -0.02 1.41 16 33 H 0.06 0.78 7.04 -2.39 -0.02 0.76 16 34 H 0.34 7.26 6.95 -89.70 -0.62 6.64 16 35 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.41 13.19 8.32 -92.71 -0.77 12.42 16 38 H 0.01 0.61 7.20 -2.39 -0.02 0.60 16 39 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 40 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -69.25 324.08 -3.88 -73.13 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.94 Total: 24.25 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 4.10 Total: 4.85 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -5.28 Total: -100.93 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -3.65 Total: -46.78 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -69.25 -3.88 -73.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227144028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.537 kcal (2) G-P(sol) polarization free energy of solvation -69.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds