Wall clock time and date at job start Mon Mar 30 2020 05:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99524 * 2 1 4 4 C 1.50698 * 109.47006 * 269.99278 * 3 2 1 5 5 H 1.08005 * 119.99819 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00046 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00192 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47261 * 60.00310 * 8 6 4 11 11 H 1.48500 * 109.47454 * 300.00304 * 8 6 4 12 12 C 1.34774 * 120.00119 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99988 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00181 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47131 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.46972 * 179.97438 * 15 14 12 17 17 C 1.47842 * 110.99877 * 49.15694 * 16 15 14 18 18 C 1.54904 * 104.79511 * 146.36266 * 17 16 15 19 19 H 1.09006 * 110.99191 * 81.01946 * 18 17 16 20 20 O 1.42899 * 111.02236 * 204.82209 * 18 17 16 21 21 C 1.55141 * 101.65336 * 322.92639 * 18 17 16 22 22 H 1.09000 * 110.70498 * 277.27195 * 21 18 17 23 23 O 1.42902 * 110.70622 * 154.03663 * 21 18 17 24 24 C 1.47450 * 110.99654 * 169.99746 * 16 15 14 25 25 H 1.09005 * 109.46878 * 90.00411 * 1 2 3 26 26 H 1.09003 * 109.47153 * 209.99784 * 1 2 3 27 27 H 1.08995 * 109.47889 * 330.00323 * 1 2 3 28 28 H 1.09001 * 109.47068 * 149.99942 * 3 2 1 29 29 H 1.08993 * 109.47068 * 29.99396 * 3 2 1 30 30 H 0.97001 * 119.99934 * 359.97438 * 7 6 4 31 31 H 1.09001 * 109.46907 * 299.99471 * 14 12 2 32 32 H 1.08997 * 109.47634 * 59.99268 * 14 12 2 33 33 H 1.09001 * 109.46919 * 299.99619 * 15 14 12 34 34 H 1.08997 * 109.47333 * 59.99239 * 15 14 12 35 35 H 1.09001 * 110.37341 * 265.19267 * 17 16 15 36 36 H 1.08998 * 110.37508 * 27.53384 * 17 16 15 37 37 H 0.96698 * 114.00150 * 292.28566 * 20 18 17 38 38 H 0.96701 * 113.99934 * 184.94665 * 23 21 18 39 39 H 1.09002 * 109.88853 * 356.14578 * 24 16 15 40 40 H 1.09000 * 109.88457 * 117.33791 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5531 3.6183 -0.6732 8 14 3.4367 3.4175 -3.4340 9 1 4.1792 4.7036 -3.4340 10 1 2.1390 3.5946 -4.1338 11 1 4.2395 2.3829 -4.1343 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 6 2.3797 -3.6351 0.0005 16 7 1.6453 -4.9074 0.0011 17 6 0.5983 -4.9152 -1.0427 18 6 0.5327 -6.3854 -1.5261 19 1 -0.0643 -6.9937 -0.8465 20 8 0.0249 -6.4644 -2.8595 21 6 2.0270 -6.7990 -1.4751 22 1 2.5476 -6.4748 -2.3762 23 8 2.1547 -8.2111 -1.2967 24 6 2.5551 -6.0428 -0.2379 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3635 0.8899 0.5137 28 1 3.1498 1.1386 0.5138 29 1 1.6082 2.0284 0.5137 30 1 3.3913 3.3383 0.2413 31 1 0.7585 -2.5298 0.8903 32 1 0.7590 -2.5303 -0.8896 33 1 3.0063 -3.5774 -0.8895 34 1 3.0065 -3.5773 0.8904 35 1 -0.3599 -4.6111 -0.6213 36 1 0.8778 -4.2573 -1.8655 37 1 -0.9058 -6.2151 -2.9414 38 1 3.0664 -8.5123 -1.1826 39 1 3.5634 -5.6760 -0.4300 40 1 2.5575 -6.7047 0.6281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234285726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:16 Heat of formation + Delta-G solvation = -125.736824 kcal Electronic energy + Delta-G solvation = -21385.398734 eV Core-core repulsion = 18007.360734 eV Total energy + Delta-G solvation = -3378.038000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.06814 -38.99259 -36.41508 -36.37440 -34.99326 -32.95545 -31.98984 -29.01343 -28.31339 -27.22482 -25.70003 -23.90292 -22.56854 -21.34366 -20.95499 -18.56974 -18.28959 -17.29348 -16.95749 -16.55504 -15.80568 -15.72940 -15.51103 -14.93590 -14.43190 -13.95068 -13.78213 -13.67518 -13.36652 -13.20387 -12.76255 -12.58550 -12.49041 -12.34682 -12.07466 -11.88496 -11.56297 -11.21175 -11.08409 -10.93253 -10.74842 -10.59318 -10.56010 -10.35969 -10.11641 -9.16482 -9.04851 -8.56570 -8.40950 -7.66512 -6.41078 -4.13039 3.29327 3.38233 3.41164 3.45219 3.58688 3.62734 3.84825 4.17121 4.17898 4.51931 4.62286 4.71933 4.93573 4.97424 5.04477 5.12707 5.20117 5.26258 5.34944 5.45375 5.50410 5.53502 5.65906 5.70288 5.82621 5.93909 6.02874 6.07896 6.61079 6.74101 6.77554 7.08902 7.24670 7.29216 7.35306 8.01101 8.23439 8.39880 8.74898 8.95728 9.56707 10.96408 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.003686 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.403495 B = 7594.740534 C = 7818.457828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.599 5.599 3 C 0.235 3.765 4 C -0.607 4.607 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.909 5.909 8 Si 1.072 2.928 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.288 1.288 12 C 0.506 3.494 13 O -0.544 6.544 14 C -0.140 4.140 15 C 0.066 3.934 16 N -0.521 5.521 17 C 0.007 3.993 18 C 0.101 3.899 19 H 0.082 0.918 20 O -0.558 6.558 21 C 0.089 3.911 22 H 0.074 0.926 23 O -0.556 6.556 24 C 0.012 3.988 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.033 0.967 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.383 0.617 38 H 0.381 0.619 39 H 0.068 0.932 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 -19.363 0.725 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.331 5.331 3 C 0.115 3.885 4 C -0.646 4.646 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.545 5.545 8 Si 0.899 3.101 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.214 1.214 12 C 0.292 3.708 13 O -0.422 6.422 14 C -0.180 4.180 15 C -0.062 4.062 16 N -0.247 5.247 17 C -0.121 4.121 18 C 0.041 3.959 19 H 0.100 0.900 20 O -0.363 6.363 21 C 0.029 3.971 22 H 0.092 0.908 23 O -0.361 6.361 24 C -0.117 4.117 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.231 0.769 38 H 0.229 0.771 39 H 0.086 0.914 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.427 -18.353 0.113 19.799 hybrid contribution -0.437 -0.800 0.294 0.958 sum -7.865 -19.153 0.407 20.709 Atomic orbital electron populations 1.21630 0.81170 1.01736 1.01253 1.47958 1.06224 1.07508 1.71422 1.19359 0.92020 0.78960 0.98143 1.22238 1.40797 1.09603 0.91920 0.93156 1.25822 0.93282 0.93297 1.06077 1.70805 1.44011 1.39581 1.00110 0.83506 0.76444 0.76319 0.73782 1.20591 1.21432 1.21431 1.20252 0.88051 0.85085 0.77429 1.90670 1.13975 1.87318 1.50276 1.21737 0.99353 0.92852 1.04089 1.22106 0.94901 0.86418 1.02772 1.63630 1.12503 1.03050 1.45501 1.23773 0.97443 0.96545 0.94334 1.22849 0.94044 0.94733 0.84240 0.89971 1.86510 1.31422 1.91126 1.27196 1.22963 0.95506 0.81531 0.97092 0.90825 1.86517 1.32758 1.21226 1.95628 1.23586 0.96386 0.93690 0.97997 0.93152 0.92319 0.91467 0.94857 0.96074 0.92232 0.88670 0.89472 0.93451 0.89415 0.89169 0.91808 0.76929 0.77095 0.91378 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 10.29 59.85 0.62 1.96 16 2 N -0.60 -12.74 2.86 -182.96 -0.52 -13.26 16 3 C 0.24 6.17 4.52 -5.19 -0.02 6.14 16 4 C -0.61 -17.56 9.39 -34.44 -0.32 -17.89 16 5 H 0.05 1.47 7.81 -52.48 -0.41 1.06 16 6 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 7 N -0.91 -27.89 13.65 55.43 0.76 -27.14 16 8 Si 1.07 25.72 29.90 -169.99 -5.08 20.63 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.51 10.41 7.67 -10.99 -0.08 10.33 16 13 O -0.54 -13.63 15.56 5.55 0.09 -13.54 16 14 C -0.14 -2.01 3.92 -27.89 -0.11 -2.12 16 15 C 0.07 0.91 4.11 -3.82 -0.02 0.90 16 16 N -0.52 -5.93 5.31 -231.25 -1.23 -7.15 16 17 C 0.01 0.07 5.04 -2.30 -0.01 0.06 16 18 C 0.10 1.01 4.15 -24.59 -0.10 0.90 16 19 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 20 O -0.56 -5.62 13.47 -35.23 -0.47 -6.09 16 21 C 0.09 0.91 4.06 -24.91 -0.10 0.81 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 23 O -0.56 -5.39 13.39 -35.23 -0.47 -5.87 16 24 C 0.01 0.12 6.64 -2.83 -0.02 0.10 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 27 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 28 H 0.03 0.97 7.29 -51.93 -0.38 0.59 16 29 H 0.02 0.55 7.76 -51.93 -0.40 0.15 16 30 H 0.27 8.14 7.22 -40.82 -0.29 7.84 16 31 H 0.10 1.18 7.40 -51.93 -0.38 0.80 16 32 H 0.09 1.12 6.44 -51.93 -0.33 0.79 16 33 H 0.05 0.73 7.92 -51.93 -0.41 0.32 16 34 H 0.09 1.29 8.10 -51.93 -0.42 0.87 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.71 7.02 -51.93 -0.36 0.35 16 37 H 0.38 2.07 9.12 45.56 0.42 2.49 16 38 H 0.38 1.98 9.11 45.56 0.42 2.39 16 39 H 0.07 0.67 7.49 -51.93 -0.39 0.28 16 40 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 LS Contribution 328.34 15.07 4.95 4.95 Total: -1.00 -36.92 328.34 -6.87 -43.79 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.61 Total: 2.02 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.27 Total: 1.67 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -1.00 Total: -47.56 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.86 Total: -25.50 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.92 -6.87 -43.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234285726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.950 kcal (2) G-P(sol) polarization free energy of solvation -36.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds