Wall clock time and date at job start Mon Mar 30 2020 05:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99524 * 2 1 4 4 C 1.50698 * 109.47006 * 269.99278 * 3 2 1 5 5 H 1.08005 * 119.99819 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00046 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00192 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47261 * 60.00310 * 8 6 4 11 11 H 1.48500 * 109.47454 * 300.00304 * 8 6 4 12 12 C 1.34774 * 120.00119 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99988 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00181 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47131 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.46972 * 179.97438 * 15 14 12 17 17 C 1.47842 * 110.99877 * 49.15694 * 16 15 14 18 18 C 1.54904 * 104.79511 * 146.36266 * 17 16 15 19 19 H 1.09006 * 110.99191 * 81.01946 * 18 17 16 20 20 O 1.42899 * 111.02236 * 204.82209 * 18 17 16 21 21 C 1.55141 * 101.65336 * 322.92639 * 18 17 16 22 22 H 1.09000 * 110.70498 * 277.27195 * 21 18 17 23 23 O 1.42902 * 110.70622 * 154.03663 * 21 18 17 24 24 C 1.47450 * 110.99654 * 169.99746 * 16 15 14 25 25 H 1.09005 * 109.46878 * 90.00411 * 1 2 3 26 26 H 1.09003 * 109.47153 * 209.99784 * 1 2 3 27 27 H 1.08995 * 109.47889 * 330.00323 * 1 2 3 28 28 H 1.09001 * 109.47068 * 149.99942 * 3 2 1 29 29 H 1.08993 * 109.47068 * 29.99396 * 3 2 1 30 30 H 0.97001 * 119.99934 * 359.97438 * 7 6 4 31 31 H 1.09001 * 109.46907 * 299.99471 * 14 12 2 32 32 H 1.08997 * 109.47634 * 59.99268 * 14 12 2 33 33 H 1.09001 * 109.46919 * 299.99619 * 15 14 12 34 34 H 1.08997 * 109.47333 * 59.99239 * 15 14 12 35 35 H 1.09001 * 110.37341 * 265.19267 * 17 16 15 36 36 H 1.08998 * 110.37508 * 27.53384 * 17 16 15 37 37 H 0.96698 * 114.00150 * 292.28566 * 20 18 17 38 38 H 0.96701 * 113.99934 * 184.94665 * 23 21 18 39 39 H 1.09002 * 109.88853 * 356.14578 * 24 16 15 40 40 H 1.09000 * 109.88457 * 117.33791 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5531 3.6183 -0.6732 8 14 3.4367 3.4175 -3.4340 9 1 4.1792 4.7036 -3.4340 10 1 2.1390 3.5946 -4.1338 11 1 4.2395 2.3829 -4.1343 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 6 2.3797 -3.6351 0.0005 16 7 1.6453 -4.9074 0.0011 17 6 0.5983 -4.9152 -1.0427 18 6 0.5327 -6.3854 -1.5261 19 1 -0.0643 -6.9937 -0.8465 20 8 0.0249 -6.4644 -2.8595 21 6 2.0270 -6.7990 -1.4751 22 1 2.5476 -6.4748 -2.3762 23 8 2.1547 -8.2111 -1.2967 24 6 2.5551 -6.0428 -0.2379 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3635 0.8899 0.5137 28 1 3.1498 1.1386 0.5138 29 1 1.6082 2.0284 0.5137 30 1 3.3913 3.3383 0.2413 31 1 0.7585 -2.5298 0.8903 32 1 0.7590 -2.5303 -0.8896 33 1 3.0063 -3.5774 -0.8895 34 1 3.0065 -3.5773 0.8904 35 1 -0.3599 -4.6111 -0.6213 36 1 0.8778 -4.2573 -1.8655 37 1 -0.9058 -6.2151 -2.9414 38 1 3.0664 -8.5123 -1.1826 39 1 3.5634 -5.6760 -0.4300 40 1 2.5575 -6.7047 0.6281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234285726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:15 Heat of formation + Delta-G solvation = -159.466862 kcal Electronic energy + Delta-G solvation = -21386.861378 eV Core-core repulsion = 18007.360734 eV Total energy + Delta-G solvation = -3379.500644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12926 -40.37812 -37.33269 -37.10489 -36.75267 -35.00790 -33.15592 -30.15714 -29.38802 -28.65813 -27.24071 -25.50536 -24.10439 -22.14124 -21.97080 -20.12568 -19.10535 -19.03428 -18.24974 -17.70665 -17.19008 -16.95100 -16.51192 -16.15800 -15.80091 -15.64209 -14.91466 -14.80656 -14.66524 -14.20898 -13.94128 -13.84416 -13.70757 -13.59174 -13.42590 -13.28866 -13.17120 -12.90565 -12.55366 -12.35055 -12.17455 -11.97337 -11.50590 -11.32161 -11.22679 -11.10852 -10.75024 -10.64268 -9.51536 -9.46386 -8.72253 -6.48396 1.47445 1.56475 1.71145 1.76340 2.16627 2.51447 2.69434 2.94897 3.07133 3.29427 3.39519 3.70575 3.89236 3.92349 3.94442 4.06301 4.17523 4.29640 4.39497 4.42560 4.52758 4.61988 4.68395 4.75048 4.77800 4.86029 4.87774 4.90149 4.95747 4.98357 5.51341 5.74805 5.78203 5.79218 6.10348 6.41802 6.63298 6.72229 6.79830 7.24927 7.37244 8.62767 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.003686 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.403495 B = 7594.740534 C = 7818.457828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.608 5.608 3 C 0.244 3.756 4 C -0.619 4.619 5 H 0.045 0.955 6 C -0.032 4.032 7 N -0.931 5.931 8 Si 1.119 2.881 9 H -0.278 1.278 10 H -0.260 1.260 11 H -0.281 1.281 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.120 4.120 15 C 0.074 3.926 16 N -0.517 5.517 17 C 0.008 3.992 18 C 0.104 3.896 19 H 0.089 0.911 20 O -0.575 6.575 21 C 0.088 3.912 22 H 0.062 0.938 23 O -0.567 6.567 24 C 0.014 3.986 25 H 0.058 0.942 26 H 0.106 0.894 27 H 0.069 0.931 28 H -0.008 1.008 29 H 0.020 0.980 30 H 0.255 0.745 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.053 0.947 37 H 0.402 0.598 38 H 0.399 0.601 39 H 0.064 0.936 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.686 -20.742 -0.007 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.339 5.339 3 C 0.122 3.878 4 C -0.657 4.657 5 H 0.063 0.937 6 C -0.230 4.230 7 N -0.568 5.568 8 Si 0.939 3.061 9 H -0.203 1.203 10 H -0.185 1.185 11 H -0.207 1.207 12 C 0.284 3.716 13 O -0.483 6.483 14 C -0.160 4.160 15 C -0.055 4.055 16 N -0.243 5.243 17 C -0.120 4.120 18 C 0.044 3.956 19 H 0.107 0.893 20 O -0.383 6.383 21 C 0.028 3.972 22 H 0.080 0.920 23 O -0.375 6.375 24 C -0.115 4.115 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.088 0.912 28 H 0.010 0.990 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.146 0.854 32 H 0.129 0.871 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.071 0.929 37 H 0.253 0.747 38 H 0.249 0.751 39 H 0.083 0.917 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.687 -19.768 -0.604 22.022 hybrid contribution 0.235 -0.447 0.557 0.752 sum -9.452 -20.215 -0.047 22.316 Atomic orbital electron populations 1.21961 0.77446 1.04276 1.02545 1.48045 1.08559 1.05998 1.71277 1.18903 0.90987 0.81529 0.96398 1.22547 1.40642 1.09618 0.92937 0.93708 1.27383 0.92581 0.93606 1.09437 1.70926 1.45479 1.40365 1.00023 0.82924 0.77723 0.76086 0.69344 1.20335 1.18497 1.20668 1.21399 0.87801 0.86722 0.75727 1.90639 1.16796 1.88254 1.52609 1.21669 0.98946 0.88752 1.06602 1.21917 0.94691 0.87754 1.01101 1.63677 1.12539 1.01954 1.46138 1.23868 0.97820 0.96604 0.93728 1.22829 0.93819 0.94604 0.84366 0.89282 1.86475 1.33284 1.91275 1.27266 1.22912 0.95947 0.81831 0.96501 0.92032 1.86478 1.34647 1.20828 1.95567 1.23602 0.96033 0.93338 0.98487 0.92371 0.87609 0.91218 0.99000 0.96205 0.93526 0.85448 0.87073 0.95798 0.90779 0.86713 0.92889 0.74725 0.75068 0.91730 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.27 10.29 127.77 1.31 3.58 16 2 N -0.61 -25.56 2.86 -851.14 -2.43 -28.00 16 3 C 0.24 13.17 4.52 85.63 0.39 13.55 16 4 C -0.62 -36.35 9.39 25.60 0.24 -36.11 16 5 H 0.04 2.62 7.81 -2.91 -0.02 2.60 16 6 C -0.03 -1.88 5.46 84.65 0.46 -1.42 16 7 N -0.93 -58.37 13.65 21.45 0.29 -58.08 16 8 Si 1.12 51.40 29.90 68.60 2.05 53.45 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.49 20.23 7.67 87.66 0.67 20.91 16 13 O -0.60 -31.18 15.56 -3.05 -0.05 -31.23 16 14 C -0.12 -3.14 3.92 29.85 0.12 -3.03 16 15 C 0.07 1.97 4.11 86.30 0.35 2.33 16 16 N -0.52 -10.63 5.31 -885.53 -4.71 -15.33 16 17 C 0.01 0.13 5.04 86.77 0.44 0.57 16 18 C 0.10 1.81 4.15 31.98 0.13 1.94 16 19 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 20 O -0.57 -10.30 13.47 -148.98 -2.01 -12.31 16 21 C 0.09 1.67 4.06 31.77 0.13 1.80 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 O -0.57 -10.03 13.39 -148.98 -1.99 -12.03 16 24 C 0.01 0.25 6.64 86.64 0.58 0.83 16 25 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.11 2.02 6.44 -2.39 -0.02 2.00 16 27 H 0.07 1.95 7.89 -2.39 -0.02 1.94 16 28 H -0.01 -0.50 7.29 -2.39 -0.02 -0.51 16 29 H 0.02 1.07 7.76 -2.39 -0.02 1.05 16 30 H 0.26 16.17 7.22 -92.71 -0.67 15.50 16 31 H 0.13 2.59 7.40 -2.39 -0.02 2.57 16 32 H 0.11 2.45 6.44 -2.39 -0.02 2.43 16 33 H 0.02 0.74 7.92 -2.39 -0.02 0.72 16 34 H 0.07 2.17 8.10 -2.39 -0.02 2.15 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.05 7.02 -2.39 -0.02 1.03 16 37 H 0.40 3.29 9.12 -74.06 -0.68 2.62 16 38 H 0.40 3.52 9.11 -74.06 -0.67 2.85 16 39 H 0.06 1.24 7.49 -2.39 -0.02 1.22 16 40 H 0.10 1.68 8.06 -2.39 -0.02 1.66 16 Total: -1.00 -82.59 328.34 -4.22 -86.80 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -0.19 Total: 11.77 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 4.82 Total: 4.95 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -6.84 Total: -101.40 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -4.05 Total: -55.57 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -82.59 -4.22 -86.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234285726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.664 kcal (2) G-P(sol) polarization free energy of solvation -82.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds