Wall clock time and date at job start Mon Mar 30 2020 04:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81398 * 103.00241 * 2 1 4 4 H 1.09001 * 110.01649 * 54.93657 * 3 2 1 5 5 C 1.54263 * 110.03276 * 293.54647 * 3 2 1 6 6 C 1.54891 * 104.19568 * 217.05332 * 5 3 2 7 7 C 1.54886 * 102.74598 * 37.94440 * 6 5 3 8 8 H 1.08996 * 110.48930 * 80.86698 * 7 6 5 9 9 N 1.46906 * 110.48474 * 203.37778 * 7 6 5 10 10 C 1.46901 * 110.99793 * 273.54791 * 9 7 6 11 11 C 1.50701 * 109.46921 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48495 * 109.46968 * 209.99597 * 19 17 15 22 22 H 1.48499 * 109.47437 * 330.00066 * 19 17 15 23 23 C 1.53873 * 110.07702 * 176.35430 * 3 2 1 24 24 H 1.08997 * 109.46889 * 299.99715 * 1 2 3 25 25 H 1.08996 * 109.46574 * 60.00037 * 1 2 3 26 26 H 1.08995 * 109.46811 * 180.02562 * 1 2 3 27 27 H 1.09009 * 110.48473 * 98.37463 * 5 3 2 28 28 H 1.09001 * 110.48768 * 335.73636 * 5 3 2 29 29 H 1.08997 * 110.75628 * 279.62426 * 6 5 3 30 30 H 1.09005 * 110.75194 * 156.25878 * 6 5 3 31 31 H 1.00899 * 110.99995 * 149.59189 * 9 7 6 32 32 H 1.09002 * 109.47401 * 59.99808 * 10 9 7 33 33 H 1.09001 * 109.46874 * 299.99821 * 10 9 7 34 34 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 35 35 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 36 36 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 37 37 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.02892 * 0.02562 * 23 3 2 39 39 H 1.08995 * 110.03294 * 238.59664 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7328 2.2634 0.8383 5 6 1.7769 2.4126 -1.3286 6 6 2.8886 3.4450 -1.6409 7 6 4.1741 2.7116 -1.1841 8 1 4.5064 2.0112 -1.9502 9 7 5.2365 3.6789 -0.8779 10 6 5.9929 4.0303 -2.0872 11 6 7.0710 5.0225 -1.7346 12 8 7.1971 5.3994 -0.5888 13 7 7.8957 5.4903 -2.6926 14 6 8.9441 6.4544 -2.3497 15 6 9.7200 6.8151 -3.5903 16 1 9.4581 6.3710 -4.5392 17 6 10.7642 7.7122 -3.5138 18 7 11.0835 8.2527 -2.3582 19 14 11.7265 8.1587 -5.0514 20 1 11.0942 9.3311 -5.7079 21 1 13.1248 8.4936 -4.6804 22 1 11.7253 7.0065 -5.9882 23 6 3.7463 1.9576 0.0919 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.8157 2.9121 -1.2069 28 1 1.7207 1.6622 -2.1172 29 1 2.7399 4.3587 -1.0656 30 1 2.9259 3.6613 -2.7086 31 1 5.8492 3.3270 -0.1576 32 1 5.3193 4.4719 -2.8216 33 1 6.4477 3.1322 -2.5051 34 1 7.7950 5.1887 -3.6089 35 1 8.4892 7.3527 -1.9321 36 1 9.6175 6.0130 -1.6151 37 1 11.8179 8.8841 -2.3044 38 1 4.2416 0.9876 0.1361 39 1 3.9967 2.5457 0.9748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235123355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:32 Heat of formation + Delta-G solvation = -53.289468 kcal Electronic energy + Delta-G solvation = -18201.752842 eV Core-core repulsion = 15269.609266 eV Total energy + Delta-G solvation = -2932.143576 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.16719 -38.24635 -34.46178 -33.94054 -32.30740 -29.63146 -29.02727 -28.60280 -27.06438 -24.82961 -22.31157 -21.02473 -20.40993 -19.62365 -17.20007 -16.96553 -16.17500 -15.78562 -15.47706 -15.15643 -15.01399 -14.45146 -14.23962 -13.82474 -13.76822 -13.59632 -13.40301 -12.82827 -12.40112 -12.28173 -11.96722 -11.64109 -11.55523 -11.46513 -11.23320 -11.13209 -10.96898 -10.92920 -10.85940 -10.31560 -10.10789 -9.39389 -9.02704 -8.73120 -8.40730 -7.99149 -7.85889 -6.16312 -4.23277 1.38356 2.23948 3.24238 3.30242 3.32639 3.39935 3.76973 4.16674 4.24834 4.31138 4.49045 4.77356 4.78419 4.93136 5.02948 5.10485 5.16505 5.19633 5.27368 5.32393 5.38779 5.40644 5.51689 5.59855 5.64064 5.72574 5.83044 5.91304 6.11779 6.95519 7.32349 7.38549 7.46004 7.52968 7.67939 7.97736 8.64408 8.79277 9.12787 9.43462 10.93877 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.062512 B = 0.002536 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.803389 B =11038.164907 C =11193.959387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.267 6.267 3 C -0.050 4.050 4 H 0.090 0.910 5 C -0.121 4.121 6 C -0.111 4.111 7 C 0.084 3.916 8 H 0.053 0.947 9 N -0.664 5.664 10 C 0.040 3.960 11 C 0.496 3.504 12 O -0.544 6.544 13 N -0.715 5.715 14 C 0.251 3.749 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.104 4.104 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.352 0.648 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.390 0.610 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.266 0.734 38 H 0.074 0.926 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.348 -15.235 1.169 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.039 6.039 3 C -0.179 4.179 4 H 0.109 0.891 5 C -0.160 4.160 6 C -0.150 4.150 7 C -0.026 4.026 8 H 0.071 0.929 9 N -0.297 5.297 10 C -0.093 4.093 11 C 0.280 3.720 12 O -0.422 6.422 13 N -0.364 5.364 14 C 0.130 3.870 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.143 4.143 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.222 0.778 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.834 -15.171 2.082 25.057 hybrid contribution 0.172 0.369 -1.368 1.427 sum -19.661 -14.802 0.714 24.620 Atomic orbital electron populations 1.23354 0.94533 1.06255 1.04902 1.86957 1.07204 1.11890 1.97881 1.23750 0.99973 0.92700 1.01449 0.89148 1.22772 0.99007 0.98730 0.95538 1.22548 0.92779 0.98343 1.01354 1.22379 0.92466 0.91882 0.95898 0.92896 1.60225 1.15558 1.44612 1.09331 1.21885 0.95519 0.98023 0.93830 1.20359 0.82641 0.82807 0.86171 1.90663 1.71753 1.59659 1.20128 1.46448 1.33892 1.45645 1.10412 1.19087 0.84405 0.86959 0.96568 1.21230 1.16017 1.26734 0.94178 0.91915 1.24962 0.96953 0.95625 0.96544 1.69973 1.29071 1.29123 1.24098 0.86411 0.79131 0.78819 0.82518 1.20453 1.21011 1.19768 1.22111 0.92116 1.00695 0.99338 0.90615 0.90468 0.88346 0.91299 0.90330 0.89967 0.91361 0.82805 0.88630 0.92804 0.77795 0.95549 0.95613 0.92445 0.90749 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.61 101.05 1.07 0.34 16 2 S -0.27 -2.38 21.34 -107.50 -2.29 -4.67 16 3 C -0.05 -0.42 3.42 -25.62 -0.09 -0.51 16 4 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.12 -0.94 6.20 -25.07 -0.16 -1.10 16 6 C -0.11 -1.04 6.50 -24.74 -0.16 -1.20 16 7 C 0.08 0.87 3.17 -66.06 -0.21 0.66 16 8 H 0.05 0.54 7.87 -51.93 -0.41 0.13 16 9 N -0.66 -8.86 5.92 -106.24 -0.63 -9.49 16 10 C 0.04 0.56 6.01 -4.97 -0.03 0.53 16 11 C 0.50 9.81 7.87 -10.98 -0.09 9.73 16 12 O -0.54 -13.10 16.20 5.56 0.09 -13.01 16 13 N -0.71 -14.98 5.55 -61.47 -0.34 -15.32 16 14 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16 15 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 19 Si 0.90 20.87 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C -0.10 -0.98 5.97 -25.62 -0.15 -1.13 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.08 0.62 7.81 -51.93 -0.41 0.21 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.35 4.90 8.12 -39.29 -0.32 4.58 16 32 H 0.10 1.19 8.12 -51.93 -0.42 0.77 16 33 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 38 H 0.07 0.72 7.60 -51.93 -0.39 0.32 16 39 H 0.09 0.88 7.99 -51.93 -0.41 0.46 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -31.93 336.15 -9.11 -41.04 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.46 Total: 5.46 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.26 Total: 0.53 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.23 Total: -50.26 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -2.29 Total: -4.67 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.93 -9.11 -41.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235123355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.251 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds