Wall clock time and date at job start Mon Mar 30 2020 04:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81398 * 103.00241 * 2 1 4 4 H 1.09001 * 110.01649 * 54.93657 * 3 2 1 5 5 C 1.54263 * 110.03276 * 293.54647 * 3 2 1 6 6 C 1.54891 * 104.19568 * 217.05332 * 5 3 2 7 7 C 1.54886 * 102.74598 * 37.94440 * 6 5 3 8 8 H 1.08996 * 110.48930 * 80.86698 * 7 6 5 9 9 N 1.46906 * 110.48474 * 203.37778 * 7 6 5 10 10 C 1.46901 * 110.99793 * 273.54791 * 9 7 6 11 11 C 1.50701 * 109.46921 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48495 * 109.46968 * 209.99597 * 19 17 15 22 22 H 1.48499 * 109.47437 * 330.00066 * 19 17 15 23 23 C 1.53873 * 110.07702 * 176.35430 * 3 2 1 24 24 H 1.08997 * 109.46889 * 299.99715 * 1 2 3 25 25 H 1.08996 * 109.46574 * 60.00037 * 1 2 3 26 26 H 1.08995 * 109.46811 * 180.02562 * 1 2 3 27 27 H 1.09009 * 110.48473 * 98.37463 * 5 3 2 28 28 H 1.09001 * 110.48768 * 335.73636 * 5 3 2 29 29 H 1.08997 * 110.75628 * 279.62426 * 6 5 3 30 30 H 1.09005 * 110.75194 * 156.25878 * 6 5 3 31 31 H 1.00899 * 110.99995 * 149.59189 * 9 7 6 32 32 H 1.09002 * 109.47401 * 59.99808 * 10 9 7 33 33 H 1.09001 * 109.46874 * 299.99821 * 10 9 7 34 34 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 35 35 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 36 36 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 37 37 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.02892 * 0.02562 * 23 3 2 39 39 H 1.08995 * 110.03294 * 238.59664 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7328 2.2634 0.8383 5 6 1.7769 2.4126 -1.3286 6 6 2.8886 3.4450 -1.6409 7 6 4.1741 2.7116 -1.1841 8 1 4.5064 2.0112 -1.9502 9 7 5.2365 3.6789 -0.8779 10 6 5.9929 4.0303 -2.0872 11 6 7.0710 5.0225 -1.7346 12 8 7.1971 5.3994 -0.5888 13 7 7.8957 5.4903 -2.6926 14 6 8.9441 6.4544 -2.3497 15 6 9.7200 6.8151 -3.5903 16 1 9.4581 6.3710 -4.5392 17 6 10.7642 7.7122 -3.5138 18 7 11.0835 8.2527 -2.3582 19 14 11.7265 8.1587 -5.0514 20 1 11.0942 9.3311 -5.7079 21 1 13.1248 8.4936 -4.6804 22 1 11.7253 7.0065 -5.9882 23 6 3.7463 1.9576 0.0919 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.8157 2.9121 -1.2069 28 1 1.7207 1.6622 -2.1172 29 1 2.7399 4.3587 -1.0656 30 1 2.9259 3.6613 -2.7086 31 1 5.8492 3.3270 -0.1576 32 1 5.3193 4.4719 -2.8216 33 1 6.4477 3.1322 -2.5051 34 1 7.7950 5.1887 -3.6089 35 1 8.4892 7.3527 -1.9321 36 1 9.6175 6.0130 -1.6151 37 1 11.8179 8.8841 -2.3044 38 1 4.2416 0.9876 0.1361 39 1 3.9967 2.5457 0.9748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235123355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:31 Heat of formation + Delta-G solvation = -76.158064 kcal Electronic energy + Delta-G solvation = -18202.744499 eV Core-core repulsion = 15269.609266 eV Total energy + Delta-G solvation = -2933.135233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.58997 -39.30440 -36.17886 -35.21153 -34.32571 -30.47622 -29.80971 -29.66589 -28.53498 -26.12455 -24.20763 -21.79888 -21.31541 -21.17853 -18.95267 -17.70625 -17.58587 -17.19621 -16.78880 -16.56389 -16.21399 -15.76785 -15.43076 -14.93432 -14.55861 -14.41318 -14.25848 -14.08528 -14.05784 -13.87702 -13.16049 -12.96084 -12.89903 -12.70004 -12.46846 -12.22744 -12.16038 -11.94424 -11.89498 -11.67231 -11.48405 -10.80107 -10.73819 -10.70970 -9.82118 -9.40246 -8.66356 -8.28910 -6.45607 0.77728 1.43370 1.45885 1.57064 1.66156 1.79887 2.29402 2.50008 3.05851 3.25489 3.44999 3.56971 3.97951 4.20012 4.27728 4.33642 4.35654 4.38422 4.39523 4.44481 4.49797 4.59322 4.72162 4.87382 4.91524 5.02184 5.08091 5.12476 5.19776 5.24759 5.37160 5.49445 5.69801 5.85337 6.02941 6.32407 6.65859 6.95023 7.23964 7.52876 8.83287 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.062512 B = 0.002536 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.803389 B =11038.164907 C =11193.959387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.310 6.310 3 C -0.042 4.042 4 H 0.093 0.907 5 C -0.111 4.111 6 C -0.110 4.110 7 C 0.086 3.914 8 H 0.062 0.938 9 N -0.680 5.680 10 C 0.057 3.943 11 C 0.492 3.508 12 O -0.592 6.592 13 N -0.709 5.709 14 C 0.267 3.733 15 C -0.556 4.556 16 H 0.085 0.915 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.986 3.014 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.255 1.255 23 C -0.101 4.101 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.345 0.655 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.409 0.591 35 H -0.015 1.015 36 H -0.014 1.014 37 H 0.268 0.732 38 H 0.071 0.929 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.745 -16.356 -1.186 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.083 6.083 3 C -0.171 4.171 4 H 0.111 0.889 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.023 4.023 8 H 0.080 0.920 9 N -0.313 5.313 10 C -0.075 4.075 11 C 0.279 3.721 12 O -0.473 6.473 13 N -0.360 5.360 14 C 0.144 3.856 15 C -0.593 4.593 16 H 0.103 0.897 17 C -0.198 4.198 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.179 1.179 23 C -0.140 4.140 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.126 0.874 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.165 0.835 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.244 0.756 35 H 0.003 0.997 36 H 0.004 0.996 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.276 -16.333 -0.309 26.824 hybrid contribution 0.540 0.683 -0.545 1.027 sum -20.736 -15.650 -0.854 25.993 Atomic orbital electron populations 1.23406 0.91560 1.07203 1.05799 1.87108 1.10564 1.12649 1.97997 1.23681 0.99052 0.92267 1.02065 0.88893 1.22717 0.99033 0.98253 0.95056 1.22530 0.92709 0.98042 1.01618 1.22444 0.91822 0.91581 0.96488 0.91975 1.60255 1.15901 1.46103 1.09022 1.21797 0.93953 0.97207 0.94537 1.21448 0.82889 0.82712 0.85006 1.90640 1.73056 1.61374 1.22259 1.46184 1.33054 1.44897 1.11881 1.18513 0.84925 0.86318 0.95852 1.21630 1.16062 1.26839 0.94802 0.89726 1.26096 0.98148 0.95347 1.00206 1.70140 1.29897 1.29963 1.26999 0.85142 0.76972 0.79075 0.77933 1.19588 1.21029 1.17853 1.22060 0.93080 1.00222 0.98667 0.89858 0.89407 0.87393 0.89915 0.89928 0.91360 0.90458 0.83545 0.86183 0.89873 0.75569 0.99676 0.99570 0.92270 0.91079 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.61 113.37 1.20 0.11 16 2 S -0.31 -5.11 21.34 -56.49 -1.21 -6.31 16 3 C -0.04 -0.64 3.42 31.32 0.11 -0.53 16 4 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 5 C -0.11 -1.46 6.20 31.67 0.20 -1.27 16 6 C -0.11 -1.82 6.50 31.88 0.21 -1.61 16 7 C 0.09 1.63 3.17 45.99 0.15 1.78 16 8 H 0.06 1.09 7.87 -2.39 -0.02 1.07 16 9 N -0.68 -17.47 5.92 -490.03 -2.90 -20.38 16 10 C 0.06 1.48 6.01 85.56 0.51 2.00 16 11 C 0.49 19.51 7.87 87.66 0.69 20.20 16 12 O -0.59 -29.54 16.20 -3.03 -0.05 -29.59 16 13 N -0.71 -29.77 5.55 -466.78 -2.59 -32.36 16 14 C 0.27 14.76 5.43 85.63 0.46 15.23 16 15 C -0.56 -30.26 9.28 25.60 0.24 -30.03 16 16 H 0.08 4.14 7.60 -2.91 -0.02 4.11 16 17 C 0.00 0.08 5.46 84.66 0.46 0.55 16 18 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 19 Si 0.99 42.32 29.54 68.60 2.03 44.34 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 23 C -0.10 -1.83 5.97 31.32 0.19 -1.64 16 24 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.09 0.69 8.12 -2.39 -0.02 0.67 16 26 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.08 1.07 7.81 -2.39 -0.02 1.05 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.35 9.60 8.12 -89.69 -0.73 8.88 16 32 H 0.12 2.60 8.12 -2.39 -0.02 2.58 16 33 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 34 H 0.41 13.91 8.32 -92.71 -0.77 13.14 16 35 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 36 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.07 1.33 7.60 -2.39 -0.02 1.31 16 39 H 0.08 1.58 7.99 -2.39 -0.02 1.57 16 Total: -1.00 -71.72 336.15 -0.48 -72.20 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.46 Total: 23.58 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 4.41 Total: 4.78 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -5.21 Total: -109.01 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.05 Total: -29.59 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -1.21 Total: -6.31 kcal Total: -71.72 -0.48 -72.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235123355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.954 kcal (2) G-P(sol) polarization free energy of solvation -71.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds