Wall clock time and date at job start Mon Mar 30 2020 04:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81408 * 102.99817 * 2 1 4 4 H 1.08992 * 109.47429 * 54.99965 * 3 2 1 5 5 C 1.53000 * 109.46799 * 294.99635 * 3 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47317 * 59.99960 * 6 5 3 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 5 9 9 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 10 10 N 1.46905 * 109.46858 * 179.97438 * 8 7 6 11 11 C 1.46897 * 110.99940 * 84.99687 * 10 8 7 12 12 C 1.50707 * 109.46929 * 179.97438 * 11 10 8 13 13 O 1.21286 * 119.99860 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99619 * 179.97438 * 12 11 10 15 15 C 1.37102 * 119.99570 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00090 * 359.97438 * 15 14 12 17 17 C 1.38954 * 119.99999 * 180.02562 * 15 14 12 18 18 N 1.31409 * 119.99798 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99985 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46722 * 89.99525 * 19 17 15 21 21 H 1.48497 * 109.47193 * 209.99554 * 19 17 15 22 22 H 1.48502 * 109.47000 * 329.99923 * 19 17 15 23 23 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 24 24 H 1.08996 * 109.47054 * 59.99984 * 1 2 3 25 25 H 1.09002 * 109.46906 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46986 * 300.00105 * 1 2 3 27 27 H 1.09002 * 109.47398 * 300.00340 * 5 3 2 28 28 H 1.09001 * 109.47194 * 60.00520 * 5 3 2 29 29 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 6 5 3 31 31 H 1.09000 * 109.47486 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46716 * 60.00091 * 7 6 5 33 33 H 1.00904 * 110.99628 * 208.94659 * 10 8 7 34 34 H 1.08992 * 109.47487 * 300.00141 * 11 10 8 35 35 H 1.09003 * 109.47270 * 60.00180 * 11 10 8 36 36 H 0.96997 * 120.00726 * 0.02562 * 14 12 11 37 37 H 0.97000 * 120.00116 * 180.02562 * 18 17 15 38 38 H 1.08993 * 109.47194 * 179.97438 * 23 8 7 39 39 H 1.09002 * 109.46695 * 59.99734 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7295 2.2542 0.8417 5 6 1.7428 2.4015 -1.3074 6 6 2.0874 3.8922 -1.3078 7 6 3.6024 4.0654 -1.1823 8 6 4.0817 3.4314 0.1251 9 1 3.5894 3.9183 0.9670 10 7 5.5364 3.5972 0.2453 11 6 5.8709 4.9029 0.8293 12 6 7.3682 5.0362 0.9372 13 8 8.0859 4.1325 0.5638 14 7 7.9096 6.1599 1.4476 15 6 9.2718 6.2813 1.5453 16 1 9.9109 5.4763 1.2136 17 6 9.8300 7.4397 2.0720 18 7 9.0524 8.4189 2.4760 19 14 11.6859 7.6048 2.2057 20 1 12.2200 8.2108 0.9595 21 1 12.0236 8.4727 3.3624 22 1 12.2895 6.2622 2.4013 23 6 3.7370 1.9407 0.1255 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2354 1.9149 -2.1492 28 1 0.6635 2.2778 -1.3970 29 1 1.7457 4.3440 -2.2389 30 1 1.5952 4.3791 -0.4659 31 1 3.8479 5.1274 -1.1820 32 1 4.0947 3.5785 -2.0241 33 1 5.9428 2.8460 0.7826 34 1 5.4801 5.6966 0.1927 35 1 5.4271 4.9815 1.8217 36 1 7.3357 6.8828 1.7458 37 1 9.4421 9.2277 2.8433 38 1 4.0789 1.4890 1.0566 39 1 4.2293 1.4538 -0.7164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235227702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:15 Heat of formation + Delta-G solvation = -57.792734 kcal Electronic energy + Delta-G solvation = -18646.023023 eV Core-core repulsion = 15713.684171 eV Total energy + Delta-G solvation = -2932.338852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.09564 -37.96170 -34.68830 -33.74738 -31.22681 -31.02678 -29.92496 -28.87009 -26.13998 -24.04385 -22.87786 -21.70727 -19.98854 -19.17272 -17.86057 -16.80570 -16.01462 -15.34339 -15.26663 -14.95653 -14.55476 -14.40333 -14.27792 -13.86516 -13.70943 -13.65292 -13.34339 -12.80854 -12.53527 -12.18048 -12.04181 -11.78340 -11.59727 -11.49218 -11.29682 -11.03711 -10.79023 -10.62554 -10.48048 -10.38073 -10.19964 -9.86604 -9.49337 -8.42492 -8.05022 -7.94244 -7.92657 -6.40304 -3.80979 1.42523 2.33076 3.19178 3.27564 3.33651 3.92600 4.04040 4.25183 4.41027 4.67316 4.77731 4.81693 4.88057 4.95502 5.04860 5.17172 5.19926 5.26111 5.29712 5.32415 5.37390 5.46414 5.72853 5.76573 5.84279 5.90295 5.97627 6.03240 6.06075 6.18255 6.26194 6.40210 7.27170 7.56720 7.69574 8.08166 8.63108 9.19575 9.56145 10.07784 10.77564 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.046948 B = 0.002995 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.258791 B = 9348.037214 C = 9635.064613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.266 6.266 3 C -0.044 4.044 4 H 0.085 0.915 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.110 4.110 8 C 0.095 3.905 9 H 0.042 0.958 10 N -0.664 5.664 11 C 0.051 3.949 12 C 0.441 3.559 13 O -0.582 6.582 14 N -0.565 5.565 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.903 5.903 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.101 4.101 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.350 0.650 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.071 0.929 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.142 -9.501 -4.243 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.037 6.037 3 C -0.173 4.173 4 H 0.104 0.896 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.148 4.148 8 C -0.017 4.017 9 H 0.060 0.940 10 N -0.297 5.297 11 C -0.082 4.082 12 C 0.227 3.773 13 O -0.466 6.466 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.140 4.140 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.171 0.829 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.849 -10.648 -5.021 21.382 hybrid contribution -0.613 1.570 1.286 2.120 sum -18.462 -9.077 -3.735 20.909 Atomic orbital electron populations 1.23378 0.94604 1.06263 1.04816 1.86979 1.06916 1.11896 1.97923 1.23160 1.00223 0.92742 1.01213 0.89626 1.21873 1.00473 0.96301 0.96574 1.21561 0.96819 0.95203 1.01992 1.21576 0.94017 1.01261 0.97987 1.21481 0.88799 0.94075 0.97330 0.94003 1.60102 1.08276 1.03940 1.57340 1.21721 0.95872 0.92766 0.97792 1.19820 0.88907 0.84446 0.84154 1.90523 1.62246 1.40672 1.53194 1.41867 1.07830 1.15522 1.54925 1.19710 0.82013 1.02467 1.38623 0.87927 1.25261 1.00469 0.95261 0.96993 1.69612 1.35736 1.06651 1.42430 0.85857 0.82277 0.78402 0.77753 1.20386 1.20953 1.19414 1.21506 0.91996 0.96669 1.03799 0.90484 0.88289 0.90665 0.90463 0.92186 0.91390 0.92121 0.91602 0.90863 0.82949 0.89637 0.93947 0.77483 0.91899 0.91029 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.45 101.05 1.06 0.22 16 2 S -0.27 -2.68 21.79 -107.50 -2.34 -5.03 16 3 C -0.04 -0.42 2.65 -26.73 -0.07 -0.49 16 4 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.11 -0.97 5.11 -26.73 -0.14 -1.10 16 6 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 7 C -0.11 -1.26 5.43 -26.73 -0.15 -1.40 16 8 C 0.09 1.18 2.49 -67.71 -0.17 1.01 16 9 H 0.04 0.51 7.80 -51.93 -0.41 0.10 16 10 N -0.66 -10.82 5.93 -107.99 -0.64 -11.46 16 11 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 12 C 0.44 10.55 7.82 -10.98 -0.09 10.46 16 13 O -0.58 -16.04 15.78 5.55 0.09 -15.95 16 14 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 15 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 16 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 19 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.10 -1.13 4.48 -26.73 -0.12 -1.25 16 24 H 0.08 0.46 7.14 -51.93 -0.37 0.09 16 25 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.44 6.92 -51.93 -0.36 0.08 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.79 7.45 -51.93 -0.39 0.41 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.35 5.95 8.04 -39.29 -0.32 5.63 16 34 H 0.09 1.41 7.43 -51.93 -0.39 1.03 16 35 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 36 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -30.84 327.69 -8.69 -39.54 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.28 Total: 11.24 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.10 Total: -0.93 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.03 Total: -50.01 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.09 Total: -15.95 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.34 Total: -5.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.84 -8.69 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235227702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.256 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds