Wall clock time and date at job start Mon Mar 30 2020 04:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81408 * 102.99817 * 2 1 4 4 H 1.08992 * 109.47429 * 54.99965 * 3 2 1 5 5 C 1.53000 * 109.46799 * 294.99635 * 3 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47317 * 59.99960 * 6 5 3 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 5 9 9 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 10 10 N 1.46905 * 109.46858 * 179.97438 * 8 7 6 11 11 C 1.46897 * 110.99940 * 84.99687 * 10 8 7 12 12 C 1.50707 * 109.46929 * 179.97438 * 11 10 8 13 13 O 1.21286 * 119.99860 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99619 * 179.97438 * 12 11 10 15 15 C 1.37102 * 119.99570 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00090 * 359.97438 * 15 14 12 17 17 C 1.38954 * 119.99999 * 180.02562 * 15 14 12 18 18 N 1.31409 * 119.99798 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99985 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46722 * 89.99525 * 19 17 15 21 21 H 1.48497 * 109.47193 * 209.99554 * 19 17 15 22 22 H 1.48502 * 109.47000 * 329.99923 * 19 17 15 23 23 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 24 24 H 1.08996 * 109.47054 * 59.99984 * 1 2 3 25 25 H 1.09002 * 109.46906 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46986 * 300.00105 * 1 2 3 27 27 H 1.09002 * 109.47398 * 300.00340 * 5 3 2 28 28 H 1.09001 * 109.47194 * 60.00520 * 5 3 2 29 29 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 6 5 3 31 31 H 1.09000 * 109.47486 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46716 * 60.00091 * 7 6 5 33 33 H 1.00904 * 110.99628 * 208.94659 * 10 8 7 34 34 H 1.08992 * 109.47487 * 300.00141 * 11 10 8 35 35 H 1.09003 * 109.47270 * 60.00180 * 11 10 8 36 36 H 0.96997 * 120.00726 * 0.02562 * 14 12 11 37 37 H 0.97000 * 120.00116 * 180.02562 * 18 17 15 38 38 H 1.08993 * 109.47194 * 179.97438 * 23 8 7 39 39 H 1.09002 * 109.46695 * 59.99734 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7295 2.2542 0.8417 5 6 1.7428 2.4015 -1.3074 6 6 2.0874 3.8922 -1.3078 7 6 3.6024 4.0654 -1.1823 8 6 4.0817 3.4314 0.1251 9 1 3.5894 3.9183 0.9670 10 7 5.5364 3.5972 0.2453 11 6 5.8709 4.9029 0.8293 12 6 7.3682 5.0362 0.9372 13 8 8.0859 4.1325 0.5638 14 7 7.9096 6.1599 1.4476 15 6 9.2718 6.2813 1.5453 16 1 9.9109 5.4763 1.2136 17 6 9.8300 7.4397 2.0720 18 7 9.0524 8.4189 2.4760 19 14 11.6859 7.6048 2.2057 20 1 12.2200 8.2108 0.9595 21 1 12.0236 8.4727 3.3624 22 1 12.2895 6.2622 2.4013 23 6 3.7370 1.9407 0.1255 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2354 1.9149 -2.1492 28 1 0.6635 2.2778 -1.3970 29 1 1.7457 4.3440 -2.2389 30 1 1.5952 4.3791 -0.4659 31 1 3.8479 5.1274 -1.1820 32 1 4.0947 3.5785 -2.0241 33 1 5.9428 2.8460 0.7826 34 1 5.4801 5.6966 0.1927 35 1 5.4271 4.9815 1.8217 36 1 7.3357 6.8828 1.7458 37 1 9.4421 9.2277 2.8433 38 1 4.0789 1.4890 1.0566 39 1 4.2293 1.4538 -0.7164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235227702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:14 Heat of formation + Delta-G solvation = -78.580134 kcal Electronic energy + Delta-G solvation = -18646.924432 eV Core-core repulsion = 15713.684171 eV Total energy + Delta-G solvation = -2933.240262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.39127 -39.51703 -36.19541 -35.49196 -33.27608 -31.86030 -30.93495 -29.56091 -27.76769 -25.74522 -23.74491 -22.64719 -21.14332 -20.76404 -19.90243 -18.01943 -17.28493 -16.87479 -16.43988 -16.17853 -16.05769 -15.51900 -15.39593 -15.23545 -14.91787 -14.43823 -14.21432 -14.16461 -13.53360 -13.50304 -13.34531 -13.20642 -12.91355 -12.75946 -12.46898 -12.42562 -12.22297 -12.12455 -11.62374 -11.51973 -11.44496 -11.34153 -10.62630 -10.34893 -10.02496 -9.34435 -8.69572 -8.47403 -5.96224 0.72808 1.37751 1.41494 1.54379 1.67815 2.04170 2.28805 2.86644 3.19799 3.43306 3.65181 3.81101 3.95266 4.17462 4.23349 4.29452 4.33134 4.37283 4.40630 4.42323 4.44553 4.48049 4.58780 4.61386 4.87743 4.97901 5.06326 5.09590 5.13781 5.25403 5.29511 5.40248 5.48797 5.90881 6.12469 6.38815 6.59428 7.11840 7.55196 8.10699 8.70101 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.046948 B = 0.002995 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.258791 B = 9348.037214 C = 9635.064613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.321 6.321 3 C -0.032 4.032 4 H 0.095 0.905 5 C -0.108 4.108 6 C -0.108 4.108 7 C -0.110 4.110 8 C 0.098 3.902 9 H 0.055 0.945 10 N -0.679 5.679 11 C 0.067 3.933 12 C 0.437 3.563 13 O -0.624 6.624 14 N -0.573 5.573 15 C -0.334 4.334 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.920 5.920 19 Si 0.993 3.007 20 H -0.271 1.271 21 H -0.269 1.269 22 H -0.273 1.273 23 C -0.095 4.095 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.343 0.657 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.064 0.936 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.938 -8.912 -4.117 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.092 6.092 3 C -0.161 4.161 4 H 0.113 0.887 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.013 4.013 9 H 0.072 0.928 10 N -0.312 5.312 11 C -0.065 4.065 12 C 0.225 3.775 13 O -0.510 6.510 14 N -0.210 5.210 15 C -0.464 4.464 16 H 0.096 0.904 17 C -0.212 4.212 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.196 1.196 21 H -0.194 1.194 22 H -0.198 1.198 23 C -0.134 4.134 24 H 0.108 0.892 25 H 0.127 0.873 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.162 0.838 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.684 -10.041 -4.895 22.633 hybrid contribution -0.105 1.337 1.231 1.820 sum -19.789 -8.704 -3.665 21.927 Atomic orbital electron populations 1.23429 0.91013 1.07305 1.05910 1.87196 1.10943 1.13004 1.98069 1.23059 0.98616 0.92208 1.02200 0.88664 1.21844 1.01526 0.95835 0.95514 1.21515 0.94567 0.95494 1.03201 1.21571 0.96032 1.00471 0.96703 1.21563 0.86370 0.95046 0.98328 0.92758 1.60130 1.10968 1.02927 1.57168 1.21570 0.91087 0.94236 0.99656 1.20885 0.91442 0.83063 0.82122 1.90491 1.64139 1.41884 1.54505 1.41931 1.07226 1.16319 1.55541 1.19668 0.83250 1.02755 1.40733 0.90408 1.26044 1.04829 0.94449 0.95924 1.69668 1.37410 1.06921 1.42123 0.84929 0.76861 0.78243 0.78314 1.19615 1.19417 1.19806 1.21402 0.93553 0.95632 1.02784 0.89241 0.87321 0.89641 0.91443 0.90217 0.90105 0.90931 0.92172 0.92386 0.83753 0.87860 0.91628 0.76941 0.91252 0.91689 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.45 113.37 1.19 -0.02 16 2 S -0.32 -6.12 21.79 -56.49 -1.23 -7.35 16 3 C -0.03 -0.55 2.65 30.60 0.08 -0.47 16 4 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 5 C -0.11 -1.59 5.11 30.59 0.16 -1.44 16 6 C -0.11 -1.62 5.92 30.59 0.18 -1.44 16 7 C -0.11 -2.35 5.43 30.60 0.17 -2.18 16 8 C 0.10 2.31 2.49 44.92 0.11 2.42 16 9 H 0.05 1.18 7.80 -2.39 -0.02 1.16 16 10 N -0.68 -22.01 5.93 -495.56 -2.94 -24.96 16 11 C 0.07 2.33 5.97 85.56 0.51 2.84 16 12 C 0.44 21.23 7.82 87.66 0.69 21.91 16 13 O -0.62 -35.41 15.78 -3.05 -0.05 -35.45 16 14 N -0.57 -29.83 5.29 -306.98 -1.62 -31.45 16 15 C -0.33 -19.27 9.68 84.04 0.81 -18.45 16 16 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 17 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 18 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16 19 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C -0.09 -2.09 4.48 30.59 0.14 -1.95 16 24 H 0.09 0.79 7.14 -2.39 -0.02 0.77 16 25 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 0.90 6.92 -2.39 -0.02 0.88 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.36 7.45 -2.39 -0.02 1.34 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.34 11.86 8.04 -89.69 -0.72 11.13 16 34 H 0.10 3.26 7.43 -2.39 -0.02 3.24 16 35 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 36 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 37 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -67.20 327.69 0.56 -66.65 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: -0.41 Total: 35.88 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.50 Total: 1.01 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -4.28 Total: -106.06 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.05 Total: -35.45 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -6.12 SS G_CDS: -1.23 Total: -7.35 kcal Total: -67.20 0.56 -66.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235227702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.933 kcal (2) G-P(sol) polarization free energy of solvation -67.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds