Wall clock time and date at job start Mon Mar 30 2020 04:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81399 * 103.00195 * 2 1 4 4 H 1.09002 * 110.01771 * 54.29928 * 3 2 1 5 5 C 1.54273 * 110.07231 * 292.87929 * 3 2 1 6 6 C 1.54888 * 104.19469 * 217.08225 * 5 3 2 7 7 C 1.54882 * 102.74855 * 37.94442 * 6 5 3 8 8 C 1.53873 * 110.03303 * 175.68951 * 3 2 1 9 9 H 1.09002 * 110.03347 * 0.04601 * 8 3 2 10 10 N 1.46894 * 110.03353 * 238.66532 * 8 3 2 11 11 C 1.46896 * 111.00085 * 155.00148 * 10 8 3 12 12 C 1.50702 * 109.47570 * 180.02562 * 11 10 8 13 13 O 1.21289 * 119.99284 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00706 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00176 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46754 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00362 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99731 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00197 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00027 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47104 * 59.99831 * 20 18 16 22 22 H 1.48500 * 109.47395 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46920 * 299.99637 * 20 18 16 24 24 H 1.08998 * 109.46931 * 300.00367 * 1 2 3 25 25 H 1.09004 * 109.47024 * 59.99684 * 1 2 3 26 26 H 1.08999 * 109.47117 * 180.02562 * 1 2 3 27 27 H 1.09001 * 110.48533 * 335.76483 * 5 3 2 28 28 H 1.08999 * 110.48202 * 98.40411 * 5 3 2 29 29 H 1.08998 * 110.75533 * 279.63020 * 6 5 3 30 30 H 1.09002 * 110.90769 * 156.32842 * 6 5 3 31 31 H 1.09000 * 110.49014 * 203.37558 * 7 6 5 32 32 H 1.08998 * 110.60130 * 80.79161 * 7 6 5 33 33 H 1.00899 * 111.00218 * 278.95716 * 10 8 3 34 34 H 1.09002 * 109.47446 * 299.99686 * 11 10 8 35 35 H 1.09002 * 109.47571 * 59.99740 * 11 10 8 36 36 H 0.97009 * 119.99757 * 359.97438 * 14 12 11 37 37 H 1.08994 * 109.47227 * 299.99752 * 15 14 12 38 38 H 1.08996 * 109.47205 * 60.00408 * 15 14 12 39 39 H 0.96999 * 120.00250 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7238 2.2655 0.8317 5 6 1.7923 2.4101 -1.3350 6 6 2.9082 3.4410 -1.6369 7 6 4.1879 2.7078 -1.1641 8 6 3.7453 1.9568 0.1087 9 1 4.2394 0.9865 0.1606 10 7 4.0700 2.7507 1.3011 11 6 5.4338 2.4669 1.7673 12 6 5.7300 3.2974 2.9895 13 8 4.8879 4.0517 3.4287 14 7 6.9308 3.2026 3.5939 15 6 7.2189 4.0103 4.7817 16 6 8.6180 3.7190 5.2599 17 1 9.2311 3.0035 4.7322 18 6 9.1149 4.3653 6.3719 19 7 8.3682 5.2362 7.0149 20 14 10.8490 4.0038 6.9652 21 1 11.8192 4.3388 5.8921 22 1 11.1410 4.8226 8.1692 23 1 10.9653 2.5630 7.3058 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.7445 1.6580 -2.1225 28 1 0.8302 2.9105 -1.2252 29 1 2.7537 4.3560 -1.0651 30 1 2.9592 3.6578 -2.7039 31 1 4.9742 3.4254 -0.9296 32 1 4.5293 2.0040 -1.9231 33 1 3.9461 3.7363 1.1241 34 1 5.5197 1.4095 2.0175 35 1 6.1457 2.7128 0.9793 36 1 7.6045 2.5995 3.2424 37 1 7.1327 5.0677 4.5317 38 1 6.5073 3.7641 5.5698 39 1 8.7179 5.6911 7.7969 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235271096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:04 Heat of formation + Delta-G solvation = -52.037516 kcal Electronic energy + Delta-G solvation = -18476.893160 eV Core-core repulsion = 15544.803873 eV Total energy + Delta-G solvation = -2932.089287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.30484 -38.28179 -34.34826 -33.84910 -32.30042 -29.60522 -28.93037 -28.42832 -27.12809 -24.96287 -22.32684 -21.03221 -20.42658 -19.65485 -17.43660 -16.82428 -16.12057 -15.68291 -15.25422 -15.15126 -14.93807 -14.43988 -14.16162 -13.97660 -13.65938 -13.51165 -13.22249 -12.86236 -12.43741 -12.13209 -11.93430 -11.78502 -11.52002 -11.40387 -11.31887 -11.17122 -10.98666 -10.97682 -10.85227 -10.31156 -9.99927 -9.40338 -9.04467 -8.72226 -8.40223 -7.85580 -7.80334 -6.15675 -4.22742 1.52279 2.39949 3.25847 3.30580 3.32057 3.39918 3.77032 4.19560 4.23784 4.37514 4.63994 4.73327 4.90763 4.93720 5.07962 5.15608 5.20194 5.25582 5.27253 5.32908 5.42714 5.47725 5.48051 5.56763 5.63511 5.66637 5.82709 5.84769 6.02900 6.90402 7.32074 7.37331 7.46104 7.53486 7.68222 7.98314 8.64634 8.79540 9.12871 9.43953 10.94518 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.003008 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.543262 B = 9307.486678 C = 9536.180755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.259 6.259 3 C -0.047 4.047 4 H 0.103 0.897 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.153 4.153 8 C 0.106 3.894 9 H 0.088 0.912 10 N -0.662 5.662 11 C 0.040 3.960 12 C 0.497 3.503 13 O -0.545 6.545 14 N -0.714 5.714 15 C 0.251 3.749 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.353 0.647 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.390 0.610 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.883 -8.149 -18.976 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.031 6.031 3 C -0.177 4.177 4 H 0.122 0.878 5 C -0.161 4.161 6 C -0.159 4.159 7 C -0.193 4.193 8 C -0.005 4.005 9 H 0.106 0.894 10 N -0.294 5.294 11 C -0.092 4.092 12 C 0.281 3.719 13 O -0.423 6.423 14 N -0.363 5.363 15 C 0.130 3.870 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.173 0.827 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.222 0.778 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.114 -8.801 -17.977 23.396 hybrid contribution 0.936 0.997 -0.349 1.411 sum -11.177 -7.804 -18.327 22.841 Atomic orbital electron populations 1.23354 0.94598 1.06190 1.04872 1.86809 1.07074 1.11408 1.97840 1.23880 0.99531 0.93146 1.01127 0.87827 1.22806 0.98818 0.98580 0.95852 1.22457 0.94198 0.98024 1.01218 1.23098 0.98076 0.99782 0.98359 1.21897 0.92624 0.97686 0.88334 0.89370 1.60127 1.24644 1.12362 1.32265 1.21876 0.90125 1.01216 0.95992 1.20336 0.82875 0.83564 0.85150 1.90664 1.46320 1.39495 1.65784 1.46442 1.14064 1.44459 1.31355 1.19079 0.95966 0.90591 0.81324 1.21199 0.98704 1.25477 1.12865 0.91954 1.24954 0.98206 0.94725 0.96128 1.69963 1.36773 1.26170 1.19403 0.86474 0.83780 0.78416 0.78230 1.20089 1.21066 1.20036 0.90454 0.90688 0.88373 0.90327 0.91358 0.91084 0.91163 0.91085 0.90731 0.82707 0.88458 0.92719 0.77775 0.95630 0.95536 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.63 101.05 1.07 0.14 16 2 S -0.26 -2.74 21.34 -107.50 -2.29 -5.03 16 3 C -0.05 -0.48 3.21 -25.61 -0.08 -0.57 16 4 H 0.10 1.22 7.92 -51.93 -0.41 0.80 16 5 C -0.12 -0.98 6.25 -25.07 -0.16 -1.13 16 6 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 7 C -0.15 -1.36 6.24 -25.07 -0.16 -1.52 16 8 C 0.11 1.15 2.91 -66.60 -0.19 0.95 16 9 H 0.09 1.00 7.26 -51.93 -0.38 0.63 16 10 N -0.66 -9.02 5.74 -106.81 -0.61 -9.63 16 11 C 0.04 0.57 5.99 -4.98 -0.03 0.54 16 12 C 0.50 9.89 7.87 -10.99 -0.09 9.80 16 13 O -0.54 -13.16 16.20 5.55 0.09 -13.07 16 14 N -0.71 -15.03 5.55 -61.48 -0.34 -15.37 16 15 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 16 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 20 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 27 H 0.08 0.62 7.81 -51.93 -0.41 0.21 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.66 7.81 -51.93 -0.41 0.25 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.35 4.93 8.14 -39.29 -0.32 4.61 16 34 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.05 0.66 7.95 -51.93 -0.41 0.24 16 36 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -32.00 335.61 -9.06 -41.07 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.43 Total: 6.32 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -0.25 Total: 0.29 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.22 Total: -50.53 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.29 Total: -5.03 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.00 -9.06 -41.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235271096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.970 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds