Wall clock time and date at job start Mon Mar 30 2020 04:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81399 * 103.00195 * 2 1 4 4 H 1.09002 * 110.01771 * 54.29928 * 3 2 1 5 5 C 1.54273 * 110.07231 * 292.87929 * 3 2 1 6 6 C 1.54888 * 104.19469 * 217.08225 * 5 3 2 7 7 C 1.54882 * 102.74855 * 37.94442 * 6 5 3 8 8 C 1.53873 * 110.03303 * 175.68951 * 3 2 1 9 9 H 1.09002 * 110.03347 * 0.04601 * 8 3 2 10 10 N 1.46894 * 110.03353 * 238.66532 * 8 3 2 11 11 C 1.46896 * 111.00085 * 155.00148 * 10 8 3 12 12 C 1.50702 * 109.47570 * 180.02562 * 11 10 8 13 13 O 1.21289 * 119.99284 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00706 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00176 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46754 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00362 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99731 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00197 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00027 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47104 * 59.99831 * 20 18 16 22 22 H 1.48500 * 109.47395 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46920 * 299.99637 * 20 18 16 24 24 H 1.08998 * 109.46931 * 300.00367 * 1 2 3 25 25 H 1.09004 * 109.47024 * 59.99684 * 1 2 3 26 26 H 1.08999 * 109.47117 * 180.02562 * 1 2 3 27 27 H 1.09001 * 110.48533 * 335.76483 * 5 3 2 28 28 H 1.08999 * 110.48202 * 98.40411 * 5 3 2 29 29 H 1.08998 * 110.75533 * 279.63020 * 6 5 3 30 30 H 1.09002 * 110.90769 * 156.32842 * 6 5 3 31 31 H 1.09000 * 110.49014 * 203.37558 * 7 6 5 32 32 H 1.08998 * 110.60130 * 80.79161 * 7 6 5 33 33 H 1.00899 * 111.00218 * 278.95716 * 10 8 3 34 34 H 1.09002 * 109.47446 * 299.99686 * 11 10 8 35 35 H 1.09002 * 109.47571 * 59.99740 * 11 10 8 36 36 H 0.97009 * 119.99757 * 359.97438 * 14 12 11 37 37 H 1.08994 * 109.47227 * 299.99752 * 15 14 12 38 38 H 1.08996 * 109.47205 * 60.00408 * 15 14 12 39 39 H 0.96999 * 120.00250 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7238 2.2655 0.8317 5 6 1.7923 2.4101 -1.3350 6 6 2.9082 3.4410 -1.6369 7 6 4.1879 2.7078 -1.1641 8 6 3.7453 1.9568 0.1087 9 1 4.2394 0.9865 0.1606 10 7 4.0700 2.7507 1.3011 11 6 5.4338 2.4669 1.7673 12 6 5.7300 3.2974 2.9895 13 8 4.8879 4.0517 3.4287 14 7 6.9308 3.2026 3.5939 15 6 7.2189 4.0103 4.7817 16 6 8.6180 3.7190 5.2599 17 1 9.2311 3.0035 4.7322 18 6 9.1149 4.3653 6.3719 19 7 8.3682 5.2362 7.0149 20 14 10.8490 4.0038 6.9652 21 1 11.8192 4.3388 5.8921 22 1 11.1410 4.8226 8.1692 23 1 10.9653 2.5630 7.3058 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.7445 1.6580 -2.1225 28 1 0.8302 2.9105 -1.2252 29 1 2.7537 4.3560 -1.0651 30 1 2.9592 3.6578 -2.7039 31 1 4.9742 3.4254 -0.9296 32 1 4.5293 2.0040 -1.9231 33 1 3.9461 3.7363 1.1241 34 1 5.5197 1.4095 2.0175 35 1 6.1457 2.7128 0.9793 36 1 7.6045 2.5995 3.2424 37 1 7.1327 5.0677 4.5317 38 1 6.5073 3.7641 5.5698 39 1 8.7179 5.6911 7.7969 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235271096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:03 Heat of formation + Delta-G solvation = -74.976776 kcal Electronic energy + Delta-G solvation = -18477.887881 eV Core-core repulsion = 15544.803873 eV Total energy + Delta-G solvation = -2933.084008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66246 -39.44396 -36.16954 -35.04098 -34.32695 -30.34060 -30.16792 -29.27893 -28.59820 -26.29235 -24.25509 -21.78372 -21.37752 -21.20581 -19.04121 -17.91472 -17.59893 -17.04487 -16.74008 -16.44355 -16.16513 -15.87279 -15.14755 -14.97159 -14.78153 -14.50433 -14.23685 -14.08918 -13.87729 -13.81802 -13.33373 -12.95850 -12.83139 -12.67292 -12.49104 -12.23814 -12.23024 -12.02462 -11.90848 -11.65799 -11.51249 -10.79287 -10.76594 -10.73988 -9.83073 -9.41495 -8.61600 -8.29050 -6.45933 0.77784 1.43107 1.47317 1.55468 1.67541 1.77999 2.28854 2.49270 3.05666 3.20547 3.46337 3.72924 3.93400 4.05060 4.29448 4.33120 4.36545 4.37192 4.38477 4.43118 4.52350 4.60762 4.70837 4.87465 4.90026 4.97546 5.10969 5.13792 5.15348 5.24361 5.38173 5.48651 5.68486 5.84805 5.95549 6.29876 6.65171 6.93538 7.23582 7.51212 8.83016 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.003008 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.543262 B = 9307.486678 C = 9536.180755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.301 6.301 3 C -0.041 4.041 4 H 0.083 0.917 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.148 4.148 8 C 0.107 3.893 9 H 0.085 0.915 10 N -0.679 5.679 11 C 0.058 3.942 12 C 0.493 3.507 13 O -0.592 6.592 14 N -0.709 5.709 15 C 0.268 3.732 16 C -0.558 4.558 17 H 0.084 0.916 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.985 3.015 21 H -0.261 1.261 22 H -0.286 1.286 23 H -0.262 1.262 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.348 0.652 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.409 0.591 37 H -0.012 1.012 38 H -0.016 1.016 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 -9.568 -20.907 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.073 6.073 3 C -0.171 4.171 4 H 0.102 0.898 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.187 4.187 8 C -0.004 4.004 9 H 0.103 0.897 10 N -0.312 5.312 11 C -0.074 4.074 12 C 0.280 3.720 13 O -0.473 6.473 14 N -0.359 5.359 15 C 0.145 3.855 16 C -0.595 4.595 17 H 0.102 0.898 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.808 3.192 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.187 1.187 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.168 0.832 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.244 0.756 37 H 0.006 0.994 38 H 0.002 0.998 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.143 -10.265 -19.961 25.059 hybrid contribution 0.517 1.433 0.243 1.543 sum -10.626 -8.831 -19.719 24.078 Atomic orbital electron populations 1.23401 0.91794 1.07217 1.05564 1.86901 1.10299 1.12193 1.97950 1.23824 0.98987 0.92585 1.01663 0.89839 1.22763 0.99244 0.98593 0.94640 1.22463 0.93556 0.97529 1.02136 1.23051 0.98405 0.99780 0.97504 1.21951 0.93070 0.97236 0.88106 0.89660 1.60113 1.24327 1.12476 1.34243 1.21764 0.91423 1.00573 0.93642 1.21391 0.81474 0.83025 0.86074 1.90640 1.47621 1.41641 1.67392 1.46177 1.15412 1.44288 1.30045 1.18507 0.95408 0.89321 0.82285 1.21607 0.98829 1.25843 1.13252 0.89755 1.26082 1.03191 0.94175 0.96197 1.70131 1.39308 1.27508 1.20066 0.85205 0.77634 0.78654 0.77711 1.18552 1.21112 1.18680 0.90600 0.89143 0.87183 0.89607 0.90548 0.91749 0.89480 0.91275 0.89463 0.83183 0.86632 0.89468 0.75576 0.99446 0.99755 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.63 113.37 1.20 -0.33 16 2 S -0.30 -6.05 21.34 -56.49 -1.21 -7.26 16 3 C -0.04 -0.80 3.21 31.32 0.10 -0.70 16 4 H 0.08 1.96 7.92 -2.39 -0.02 1.94 16 5 C -0.11 -1.61 6.25 31.67 0.20 -1.41 16 6 C -0.12 -1.63 6.91 31.88 0.22 -1.41 16 7 C -0.15 -2.30 6.24 31.67 0.20 -2.10 16 8 C 0.11 2.17 2.91 45.64 0.13 2.30 16 9 H 0.09 1.79 7.26 -2.39 -0.02 1.78 16 10 N -0.68 -18.05 5.74 -491.84 -2.82 -20.87 16 11 C 0.06 1.56 5.99 85.56 0.51 2.07 16 12 C 0.49 19.80 7.87 87.66 0.69 20.49 16 13 O -0.59 -29.70 16.20 -3.06 -0.05 -29.75 16 14 N -0.71 -30.03 5.55 -466.80 -2.59 -32.62 16 15 C 0.27 14.88 5.43 85.63 0.46 15.34 16 16 C -0.56 -30.53 9.28 25.60 0.24 -30.29 16 17 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 18 C 0.00 0.18 5.46 84.66 0.46 0.64 16 19 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 20 Si 0.99 42.44 29.54 68.60 2.03 44.47 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 22 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.09 1.13 7.81 -2.39 -0.02 1.11 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.12 7.81 -2.39 -0.02 1.10 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.35 9.70 8.14 -89.69 -0.73 8.97 16 34 H 0.12 2.75 8.07 -2.39 -0.02 2.73 16 35 H 0.09 1.83 7.95 -2.39 -0.02 1.82 16 36 H 0.41 14.12 8.32 -92.70 -0.77 13.35 16 37 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 39 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -71.99 335.61 -0.40 -72.39 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.46 Total: 25.46 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 4.42 Total: 4.59 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -5.13 Total: -109.91 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.05 Total: -29.75 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -6.05 SS G_CDS: -1.21 Total: -7.26 kcal Total: -71.99 -0.40 -72.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235271096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.587 kcal (2) G-P(sol) polarization free energy of solvation -71.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds