Wall clock time and date at job start Mon Mar 30 2020 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99543 * 2 1 4 4 H 1.48502 * 109.46917 * 239.99913 * 3 2 1 5 5 H 1.48503 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46799 * 120.00119 * 3 2 1 7 7 C 1.37875 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99387 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00090 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46747 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99345 * 179.97438 * 10 9 7 12 12 S 1.71199 * 120.00423 * 4.98684 * 11 10 9 13 13 N 1.34780 * 119.99587 * 184.97912 * 11 10 9 14 14 C 1.47074 * 120.88274 * 174.79587 * 13 11 10 15 15 C 1.53232 * 108.52638 * 128.79458 * 14 13 11 16 16 N 1.46908 * 109.33886 * 53.82874 * 15 14 13 17 17 C 1.46898 * 110.99970 * 172.75033 * 16 15 14 18 18 C 1.53001 * 109.46991 * 170.00142 * 17 16 15 19 19 N 1.46898 * 109.46991 * 180.02562 * 18 17 16 20 20 C 1.46901 * 111.26579 * 296.89719 * 16 15 14 21 21 C 1.47082 * 120.88128 * 354.77681 * 13 11 10 22 22 H 0.96998 * 119.99861 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47329 * 59.99781 * 9 7 2 24 24 H 1.09006 * 109.46793 * 299.99516 * 9 7 2 25 25 H 0.96992 * 120.00131 * 359.97438 * 10 9 7 26 26 H 1.09003 * 109.62948 * 9.08432 * 14 13 11 27 27 H 1.09000 * 109.78903 * 248.60534 * 14 13 11 28 28 H 1.08994 * 109.49707 * 173.78939 * 15 14 13 29 29 H 1.09006 * 109.49414 * 293.87455 * 15 14 13 30 30 H 1.09004 * 109.46971 * 290.00180 * 17 16 15 31 31 H 1.08999 * 109.47187 * 50.00251 * 17 16 15 32 32 H 1.09002 * 109.46830 * 299.99631 * 18 17 16 33 33 H 1.08999 * 109.47066 * 60.00035 * 18 17 16 34 34 H 1.00901 * 111.00358 * 56.04390 * 19 18 17 35 35 H 1.00898 * 110.99783 * 180.02562 * 19 18 17 36 36 H 1.08992 * 109.49887 * 303.14336 * 20 16 15 37 37 H 1.09007 * 109.50826 * 183.07189 * 20 16 15 38 38 H 1.09007 * 109.62899 * 350.91254 * 21 13 11 39 39 H 1.08995 * 109.63379 * 111.49376 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 1.7539 -4.8833 -0.0019 12 16 0.0761 -5.1981 -0.1315 13 7 2.6256 -5.9063 0.0997 14 6 2.1513 -7.2936 0.2155 15 6 2.8707 -8.1436 -0.8371 16 7 4.3224 -7.9695 -0.6937 17 6 5.0527 -8.8964 -1.5686 18 6 6.5363 -8.5228 -1.5821 19 7 7.2665 -9.4493 -2.4575 20 6 4.7201 -6.5789 -0.9509 21 6 4.0765 -5.6649 0.0972 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5563 -0.8919 24 1 0.6242 -2.5575 0.8881 25 1 3.1568 -3.4354 -0.0010 26 1 1.0758 -7.3286 0.0417 27 1 2.3738 -7.6778 1.2110 28 1 2.6144 -9.1933 -0.6941 29 1 2.5630 -7.8261 -1.8334 30 1 4.9377 -9.9143 -1.1961 31 1 4.6526 -8.8323 -2.5805 32 1 6.6513 -7.5049 -1.9546 33 1 6.9364 -8.5869 -0.5702 34 1 6.8724 -9.4558 -3.3863 35 1 8.2496 -9.2236 -2.4830 36 1 4.3867 -6.2832 -1.9455 37 1 5.8052 -6.4936 -0.8907 38 1 4.2739 -4.6229 -0.1550 39 1 4.4870 -5.8904 1.0813 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243114931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:57 Heat of formation + Delta-G solvation = 33.717596 kcal Electronic energy + Delta-G solvation = -19028.221134 eV Core-core repulsion = 16132.143218 eV Total energy + Delta-G solvation = -2896.077915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.00421 -37.72209 -35.57226 -33.97501 -32.60080 -31.54062 -29.40057 -27.40095 -25.67833 -24.74052 -23.10252 -22.03479 -21.58961 -20.05541 -18.29514 -16.83177 -16.52417 -16.10233 -15.89124 -15.32280 -15.25698 -14.90995 -14.75766 -14.30569 -14.18010 -13.67525 -13.38046 -13.01856 -12.57517 -12.23689 -12.16224 -11.74138 -11.57851 -11.36704 -11.29400 -11.15206 -11.01834 -10.65913 -10.35955 -10.35193 -9.56917 -9.14313 -8.85468 -8.66067 -8.10052 -7.13962 -6.68906 -6.23730 -4.34502 2.09090 2.48491 3.14640 3.18946 3.24382 3.25866 3.45575 3.95625 4.22815 4.29537 4.52591 4.58376 4.65471 4.81988 4.92257 5.02046 5.11104 5.11399 5.17822 5.34591 5.39952 5.53917 5.55039 5.62805 5.79791 5.99838 6.45932 6.53451 6.62713 6.71479 6.77048 6.94474 7.21315 7.38265 7.40928 7.67933 7.84204 8.20272 8.69807 9.30963 10.84772 Molecular weight = 272.14amu Principal moments of inertia in cm(-1) A = 0.023230 B = 0.004114 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.068856 B = 6804.829634 C = 7823.914540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.558 4.558 8 H 0.060 0.940 9 C 0.251 3.749 10 N -0.654 5.654 11 C 0.561 3.439 12 S -0.676 6.676 13 N -0.589 5.589 14 C 0.115 3.885 15 C 0.044 3.956 16 N -0.536 5.536 17 C 0.057 3.943 18 C 0.056 3.944 19 N -0.851 5.851 20 C 0.036 3.964 21 C 0.104 3.896 22 H 0.269 0.731 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.387 0.613 26 H 0.130 0.870 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.340 0.660 35 H 0.345 0.655 36 H 0.040 0.960 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.875 -15.624 -2.810 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.596 4.596 8 H 0.078 0.922 9 C 0.132 3.868 10 N -0.278 5.278 11 C 0.200 3.800 12 S -0.548 6.548 13 N -0.304 5.304 14 C -0.009 4.009 15 C -0.085 4.085 16 N -0.261 5.261 17 C -0.071 4.071 18 C -0.075 4.075 19 N -0.381 5.381 20 C -0.094 4.094 21 C -0.023 4.023 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.225 0.775 26 H 0.147 0.853 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.059 0.941 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.466 -16.222 -1.875 21.166 hybrid contribution 1.883 2.276 -1.378 3.260 sum 15.349 -13.946 -3.253 20.992 Atomic orbital electron populations 1.69976 1.05993 1.27674 1.47448 1.24900 0.94932 0.99315 0.94411 0.86461 0.79448 0.82264 0.78662 1.20070 1.20840 1.20031 1.21095 0.93038 0.90353 1.55107 0.92202 1.19636 0.87479 0.79588 1.00143 1.46119 1.11680 1.04248 1.65776 1.22250 0.94122 0.82534 0.81130 1.93141 0.95007 1.90493 1.76195 1.47107 1.04479 1.06405 1.72397 1.22135 1.02857 0.77135 0.98816 1.22532 0.86395 1.00896 0.98636 1.62038 1.06061 1.04209 1.53821 1.22081 0.92646 0.97498 0.94856 1.21963 0.93792 0.93253 0.98458 1.58599 1.07273 1.56344 1.15925 1.22600 1.00821 0.88518 0.97419 1.21940 0.80354 0.99417 1.00543 0.92117 0.93103 0.93434 0.77535 0.85265 0.90503 0.89065 0.93918 0.89493 0.94949 0.95140 0.89952 0.84785 0.84245 0.94148 0.88822 0.89829 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.35 13.29 55.43 0.74 -24.62 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.56 -14.68 9.28 -34.44 -0.32 -15.00 16 8 H 0.06 1.46 7.60 -52.49 -0.40 1.06 16 9 C 0.25 6.46 4.90 -5.19 -0.03 6.43 16 10 N -0.65 -13.36 5.46 -63.21 -0.34 -13.71 16 11 C 0.56 11.03 7.72 -86.91 -0.67 10.36 16 12 S -0.68 -16.08 27.05 -107.50 -2.91 -18.99 16 13 N -0.59 -8.76 3.01 -174.49 -0.53 -9.28 16 14 C 0.11 1.49 6.51 -3.61 -0.02 1.47 16 15 C 0.04 0.47 5.58 -3.70 -0.02 0.45 16 16 N -0.54 -5.14 4.78 -234.32 -1.12 -6.26 16 17 C 0.06 0.47 5.53 -3.82 -0.02 0.45 16 18 C 0.06 0.40 6.04 -3.82 -0.02 0.37 16 19 N -0.85 -5.40 9.62 -10.37 -0.10 -5.50 16 20 C 0.04 0.34 5.04 -3.70 -0.02 0.32 16 21 C 0.10 1.18 6.54 -3.60 -0.02 1.15 16 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.05 1.47 7.89 -51.93 -0.41 1.06 16 24 H 0.05 1.37 8.08 -51.93 -0.42 0.95 16 25 H 0.39 6.76 5.86 -40.82 -0.24 6.52 16 26 H 0.13 1.99 5.99 -50.64 -0.30 1.68 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.28 8.08 -51.93 -0.42 -0.14 16 32 H 0.03 0.21 6.18 -51.93 -0.32 -0.11 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.34 1.86 8.99 -39.29 -0.35 1.51 16 35 H 0.34 1.67 9.08 -39.29 -0.36 1.32 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.72 5.73 -51.92 -0.30 0.42 16 38 H 0.08 0.92 5.74 -51.93 -0.30 0.62 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 321.14 15.07 4.84 4.84 Total: -1.00 -32.20 321.14 -11.60 -43.80 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.91 Total: 6.56 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -1.24 Total: 7.80 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -1.35 Total: -59.36 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: -16.08 SS G_CDS: -2.91 Total: -18.99 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.20 -11.60 -43.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243114931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.514 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds