Wall clock time and date at job start Mon Mar 30 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99877 * 2 1 4 4 H 1.48498 * 109.46792 * 264.80169 * 3 2 1 5 5 H 1.48494 * 109.46950 * 24.79987 * 3 2 1 6 6 H 1.48499 * 109.47137 * 144.80063 * 3 2 1 7 7 C 1.37877 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99878 * 355.06342 * 7 2 1 9 9 C 1.50703 * 119.99797 * 175.05659 * 7 2 1 10 10 H 1.08998 * 109.47333 * 4.89157 * 9 7 2 11 11 C 1.50697 * 109.47042 * 244.88420 * 9 7 2 12 12 C 1.38237 * 120.00503 * 285.29542 * 11 9 7 13 13 C 1.38230 * 120.00020 * 180.32709 * 12 11 9 14 14 C 1.38230 * 120.00180 * 359.92301 * 13 12 11 15 15 C 1.38233 * 120.00351 * 0.07785 * 14 13 12 16 16 C 1.38237 * 119.99702 * 359.94564 * 15 14 13 17 17 N 1.46900 * 109.46696 * 124.88771 * 9 7 2 18 18 C 1.50107 * 111.00281 * 305.46011 * 17 9 7 19 19 C 1.51380 * 102.37068 * 212.55518 * 18 17 9 20 20 H 1.09000 * 111.67154 * 288.32567 * 19 18 17 21 21 C 1.51374 * 124.04259 * 150.73651 * 19 18 17 22 22 N 1.50109 * 102.37522 * 209.25379 * 21 19 18 23 23 C 1.49776 * 107.61883 * 25.80057 * 22 21 19 24 24 C 1.49473 * 104.56630 * 6.76425 * 23 22 21 25 25 H 1.09000 * 108.56872 * 76.58546 * 24 23 22 26 26 C 1.49476 * 129.10491 * 211.48931 * 24 23 22 27 27 H 0.97004 * 120.00242 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99633 * 0.27811 * 12 11 9 29 29 H 1.08008 * 119.99850 * 179.97438 * 13 12 11 30 30 H 1.08003 * 120.00133 * 180.02562 * 14 13 12 31 31 H 1.07997 * 120.00606 * 179.97438 * 15 14 13 32 32 H 1.08000 * 119.99850 * 180.02562 * 16 15 14 33 33 H 1.09010 * 110.82239 * 330.76606 * 18 17 9 34 34 H 1.08988 * 110.83190 * 94.32854 * 18 17 9 35 35 H 1.09005 * 110.82769 * 91.03394 * 21 19 18 36 36 H 1.08998 * 110.99707 * 327.55453 * 21 19 18 37 37 H 1.00896 * 111.00260 * 147.44438 * 22 21 19 38 38 H 1.09002 * 110.42017 * 247.99493 * 23 22 21 39 39 H 1.09003 * 110.42155 * 125.53045 * 23 22 21 40 40 H 1.09001 * 110.41462 * 29.73277 * 26 24 23 41 41 H 1.08996 * 110.51641 * 267.33008 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6065 1.9830 -1.3943 5 1 1.3959 2.6819 0.5872 6 1 3.4874 1.4745 0.8070 7 6 2.0046 -1.1940 0.0005 8 1 1.4676 -2.1275 0.0814 9 6 3.5074 -1.1964 -0.1119 10 1 3.8746 -0.1702 -0.0963 11 6 3.9133 -1.8557 -1.4048 12 6 3.8339 -3.2296 -1.5349 13 6 4.2127 -3.8348 -2.7185 14 6 4.6693 -3.0661 -3.7727 15 6 4.7488 -1.6922 -3.6427 16 6 4.3705 -1.0869 -2.4589 17 7 4.0817 -1.9391 1.0179 18 6 3.5917 -1.3913 2.3267 19 6 4.7789 -1.6180 3.2381 20 1 4.9109 -2.6745 3.4718 21 6 5.1095 -0.7476 4.4315 22 7 6.6033 -0.8698 4.5150 23 6 7.1088 -1.1950 3.1431 24 6 5.9053 -1.0866 2.2634 25 1 5.6937 -0.0310 2.0932 26 6 5.5765 -1.8448 1.0179 27 1 -0.4851 0.8401 -0.0004 28 1 3.4767 -3.8302 -0.7114 29 1 4.1510 -4.9084 -2.8200 30 1 4.9649 -3.5389 -4.6976 31 1 5.1059 -1.0915 -4.4661 32 1 4.4322 -0.0135 -2.3575 33 1 3.3660 -0.3282 2.2416 34 1 2.7219 -1.9463 2.6779 35 1 4.6380 -1.1337 5.3353 36 1 4.8146 0.2867 4.2542 37 1 7.0172 -0.0168 4.8600 38 1 7.5097 -2.2083 3.1158 39 1 7.8690 -0.4760 2.8376 40 1 6.0203 -2.8398 1.0502 41 1 5.9233 -1.3030 0.1381 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250826711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:07 Heat of formation + Delta-G solvation = 62.526968 kcal Electronic energy + Delta-G solvation = -21568.993242 eV Core-core repulsion = 18642.260987 eV Total energy + Delta-G solvation = -2926.732255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20021 -38.48492 -35.83875 -32.99639 -31.50807 -30.19182 -30.06650 -28.82554 -26.77645 -25.84742 -23.30324 -22.04616 -21.58651 -20.18446 -19.85487 -19.23257 -17.24624 -16.19782 -16.00044 -15.58007 -14.89468 -14.61862 -14.36159 -13.94845 -13.76173 -13.14568 -12.96506 -12.81617 -12.69932 -12.35993 -12.17610 -12.17111 -11.79366 -11.33471 -11.25161 -11.09658 -11.00005 -10.71385 -10.38351 -10.34080 -10.03527 -9.93379 -9.84637 -9.47948 -8.76627 -8.52596 -8.22459 -7.87201 -7.41525 -6.25818 -4.24582 2.09057 2.14950 3.10803 3.16931 3.20911 4.17659 4.21420 4.25215 4.43953 4.69990 4.91771 5.11494 5.31096 5.41971 5.51943 5.56260 5.60015 5.66195 5.69292 5.83821 5.87759 5.96001 6.00563 6.03537 6.21383 6.24589 6.26737 6.27420 6.42552 6.55917 6.61268 6.65805 6.74191 6.80703 6.82729 7.09872 7.15545 7.28149 7.30872 7.47713 7.75091 7.83045 7.92475 8.45589 8.86335 9.35747 10.86541 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.008336 C = 0.006094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.714502 B = 3358.203669 C = 4593.785924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.079 3.921 3 Si 0.867 3.133 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.491 4.491 8 H 0.084 0.916 9 C 0.204 3.796 10 H 0.016 0.984 11 C -0.028 4.028 12 C -0.091 4.091 13 C -0.128 4.128 14 C -0.147 4.147 15 C -0.125 4.125 16 C -0.135 4.135 17 N -0.511 5.511 18 C 0.083 3.917 19 C -0.122 4.122 20 H 0.092 0.908 21 C 0.058 3.942 22 N -0.682 5.682 23 C 0.069 3.931 24 C -0.160 4.160 25 H 0.057 0.943 26 C 0.060 3.940 27 H 0.267 0.733 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.333 0.667 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.881 -1.528 2.113 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.125 4.125 3 Si 0.695 3.305 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.530 4.530 8 H 0.102 0.898 9 C 0.097 3.903 10 H 0.034 0.966 11 C -0.029 4.029 12 C -0.110 4.110 13 C -0.146 4.146 14 C -0.166 4.166 15 C -0.143 4.143 16 C -0.154 4.154 17 N -0.236 5.236 18 C -0.045 4.045 19 C -0.142 4.142 20 H 0.110 0.890 21 C -0.071 4.071 22 N -0.310 5.310 23 C -0.060 4.060 24 C -0.181 4.181 25 H 0.075 0.925 26 C -0.068 4.068 27 H 0.077 0.923 28 H 0.143 0.857 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.147 0.853 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.533 -2.595 2.309 12.045 hybrid contribution 0.435 2.890 -0.602 2.984 sum 11.969 0.294 1.707 12.093 Atomic orbital electron populations 1.69867 1.06058 1.27153 1.49070 1.25050 0.94724 0.98500 0.94256 0.87044 0.79952 0.84477 0.79036 1.19820 1.21140 1.19576 1.20776 0.87469 0.95015 1.49708 0.89755 1.18989 0.96035 0.90339 0.84900 0.96605 1.20271 0.92392 0.93772 0.96511 1.20962 0.98396 0.94668 0.96947 1.21080 1.00530 0.99045 0.93991 1.20864 1.03171 0.93990 0.98530 1.20902 1.01454 0.94784 0.97167 1.20964 1.01262 0.99146 0.94019 1.65527 1.01604 1.54075 1.02376 1.22051 0.95434 0.99033 0.87963 1.22790 0.96887 1.00614 0.93905 0.88997 1.22239 0.88040 0.98251 0.98584 1.63532 1.05154 1.39304 1.23054 1.21615 0.95330 1.01695 0.87335 1.22514 0.97101 1.00851 0.97589 0.92457 1.21851 0.91486 0.98987 0.94467 0.92302 0.85702 0.87166 0.87403 0.87330 0.87587 0.93543 0.89871 0.89988 0.93673 0.85323 0.90396 0.92771 0.91214 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.80 13.96 55.43 0.77 -25.03 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 3 Si 0.87 20.69 26.53 -169.99 -4.51 16.18 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.22 6.30 56.52 0.36 -5.86 16 7 C -0.49 -13.02 7.91 -34.44 -0.27 -13.30 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 9 C 0.20 4.61 1.29 -70.02 -0.09 4.52 16 10 H 0.02 0.38 4.42 -51.93 -0.23 0.15 16 11 C -0.03 -0.60 3.85 -104.62 -0.40 -1.00 16 12 C -0.09 -1.80 9.27 -39.58 -0.37 -2.17 16 13 C -0.13 -2.20 10.05 -39.59 -0.40 -2.60 16 14 C -0.15 -2.40 10.05 -39.59 -0.40 -2.80 16 15 C -0.12 -2.15 10.05 -39.58 -0.40 -2.55 16 16 C -0.14 -2.68 9.67 -39.58 -0.38 -3.07 16 17 N -0.51 -10.28 4.59 -227.22 -1.04 -11.32 16 18 C 0.08 1.60 5.42 -2.84 -0.02 1.59 16 19 C -0.12 -1.94 3.29 -89.43 -0.29 -2.23 16 20 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 21 C 0.06 0.79 7.31 -2.85 -0.02 0.77 16 22 N -0.68 -8.70 7.57 -111.81 -0.85 -9.54 16 23 C 0.07 0.90 7.46 -3.96 -0.03 0.87 16 24 C -0.16 -2.49 2.74 -91.27 -0.25 -2.74 16 25 H 0.06 0.99 7.90 -51.93 -0.41 0.58 16 26 C 0.06 1.04 6.29 -3.96 -0.02 1.02 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.13 2.50 7.89 -52.49 -0.41 2.09 16 29 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.11 2.07 8.00 -52.49 -0.42 1.65 16 33 H 0.05 0.99 6.95 -51.92 -0.36 0.63 16 34 H 0.08 1.67 8.14 -51.94 -0.42 1.25 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.33 3.60 8.94 -39.29 -0.35 3.25 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.94 7.19 -51.93 -0.37 0.57 16 LS Contribution 322.11 15.07 4.85 4.85 Total: -1.00 -28.23 322.11 -10.60 -38.84 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.39 Total: 7.65 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -3.44 Total: -21.63 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -1.12 Total: -45.89 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.51 Total: 16.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.23 -10.60 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250826711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.364 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds