Wall clock time and date at job start Mon Mar 30 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99877 * 2 1 4 4 H 1.48498 * 109.46792 * 264.80169 * 3 2 1 5 5 H 1.48494 * 109.46950 * 24.79987 * 3 2 1 6 6 H 1.48499 * 109.47137 * 144.80063 * 3 2 1 7 7 C 1.37877 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99878 * 355.06342 * 7 2 1 9 9 C 1.50703 * 119.99797 * 175.05659 * 7 2 1 10 10 H 1.08998 * 109.47333 * 4.89157 * 9 7 2 11 11 C 1.50697 * 109.47042 * 244.88420 * 9 7 2 12 12 C 1.38237 * 120.00503 * 285.29542 * 11 9 7 13 13 C 1.38230 * 120.00020 * 180.32709 * 12 11 9 14 14 C 1.38230 * 120.00180 * 359.92301 * 13 12 11 15 15 C 1.38233 * 120.00351 * 0.07785 * 14 13 12 16 16 C 1.38237 * 119.99702 * 359.94564 * 15 14 13 17 17 N 1.46900 * 109.46696 * 124.88771 * 9 7 2 18 18 C 1.50107 * 111.00281 * 305.46011 * 17 9 7 19 19 C 1.51380 * 102.37068 * 212.55518 * 18 17 9 20 20 H 1.09000 * 111.67154 * 288.32567 * 19 18 17 21 21 C 1.51374 * 124.04259 * 150.73651 * 19 18 17 22 22 N 1.50109 * 102.37522 * 209.25379 * 21 19 18 23 23 C 1.49776 * 107.61883 * 25.80057 * 22 21 19 24 24 C 1.49473 * 104.56630 * 6.76425 * 23 22 21 25 25 H 1.09000 * 108.56872 * 76.58546 * 24 23 22 26 26 C 1.49476 * 129.10491 * 211.48931 * 24 23 22 27 27 H 0.97004 * 120.00242 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99633 * 0.27811 * 12 11 9 29 29 H 1.08008 * 119.99850 * 179.97438 * 13 12 11 30 30 H 1.08003 * 120.00133 * 180.02562 * 14 13 12 31 31 H 1.07997 * 120.00606 * 179.97438 * 15 14 13 32 32 H 1.08000 * 119.99850 * 180.02562 * 16 15 14 33 33 H 1.09010 * 110.82239 * 330.76606 * 18 17 9 34 34 H 1.08988 * 110.83190 * 94.32854 * 18 17 9 35 35 H 1.09005 * 110.82769 * 91.03394 * 21 19 18 36 36 H 1.08998 * 110.99707 * 327.55453 * 21 19 18 37 37 H 1.00896 * 111.00260 * 147.44438 * 22 21 19 38 38 H 1.09002 * 110.42017 * 247.99493 * 23 22 21 39 39 H 1.09003 * 110.42155 * 125.53045 * 23 22 21 40 40 H 1.09001 * 110.41462 * 29.73277 * 26 24 23 41 41 H 1.08996 * 110.51641 * 267.33008 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6065 1.9830 -1.3943 5 1 1.3959 2.6819 0.5872 6 1 3.4874 1.4745 0.8070 7 6 2.0046 -1.1940 0.0005 8 1 1.4676 -2.1275 0.0814 9 6 3.5074 -1.1964 -0.1119 10 1 3.8746 -0.1702 -0.0963 11 6 3.9133 -1.8557 -1.4048 12 6 3.8339 -3.2296 -1.5349 13 6 4.2127 -3.8348 -2.7185 14 6 4.6693 -3.0661 -3.7727 15 6 4.7488 -1.6922 -3.6427 16 6 4.3705 -1.0869 -2.4589 17 7 4.0817 -1.9391 1.0179 18 6 3.5917 -1.3913 2.3267 19 6 4.7789 -1.6180 3.2381 20 1 4.9109 -2.6745 3.4718 21 6 5.1095 -0.7476 4.4315 22 7 6.6033 -0.8698 4.5150 23 6 7.1088 -1.1950 3.1431 24 6 5.9053 -1.0866 2.2634 25 1 5.6937 -0.0310 2.0932 26 6 5.5765 -1.8448 1.0179 27 1 -0.4851 0.8401 -0.0004 28 1 3.4767 -3.8302 -0.7114 29 1 4.1510 -4.9084 -2.8200 30 1 4.9649 -3.5389 -4.6976 31 1 5.1059 -1.0915 -4.4661 32 1 4.4322 -0.0135 -2.3575 33 1 3.3660 -0.3282 2.2416 34 1 2.7219 -1.9463 2.6779 35 1 4.6380 -1.1337 5.3353 36 1 4.8146 0.2867 4.2542 37 1 7.0172 -0.0168 4.8600 38 1 7.5097 -2.2083 3.1158 39 1 7.8690 -0.4760 2.8376 40 1 6.0203 -2.8398 1.0502 41 1 5.9233 -1.3030 0.1381 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250826711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:06 Heat of formation + Delta-G solvation = 43.380883 kcal Electronic energy + Delta-G solvation = -21569.823479 eV Core-core repulsion = 18642.260987 eV Total energy + Delta-G solvation = -2927.562492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56972 -39.91037 -37.27230 -34.85359 -33.16421 -31.61824 -31.37748 -30.23341 -28.46311 -27.21304 -24.96481 -23.48590 -22.98168 -21.58402 -21.16168 -20.75833 -19.24998 -17.61190 -17.31201 -16.95221 -16.47011 -16.16808 -15.92973 -15.29972 -15.14678 -14.83525 -14.53535 -14.27640 -14.15257 -13.95894 -13.59586 -13.47969 -13.18562 -13.00306 -12.78430 -12.54895 -12.40427 -12.20927 -12.03594 -11.79504 -11.73106 -11.61754 -11.36820 -11.13625 -10.84447 -9.65718 -9.57370 -9.37745 -9.04751 -8.38678 -6.40472 0.64333 0.70847 1.18534 1.19460 1.27493 2.19198 2.81928 2.95266 3.11754 3.17080 3.23761 3.66366 4.05409 4.13696 4.22267 4.26703 4.30937 4.34077 4.41107 4.44169 4.49621 4.58407 4.65236 4.77370 4.82167 4.83699 4.86066 4.92753 5.05868 5.10738 5.17576 5.23531 5.32397 5.33021 5.42167 5.57120 5.71537 5.76084 5.95625 6.03479 6.14283 6.32519 6.37879 6.55728 6.66982 7.23531 8.78027 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.008336 C = 0.006094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.714502 B = 3358.203669 C = 4593.785924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.027 3.973 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.486 4.486 8 H 0.038 0.962 9 C 0.215 3.785 10 H 0.005 0.995 11 C -0.058 4.058 12 C -0.109 4.109 13 C -0.125 4.125 14 C -0.137 4.137 15 C -0.122 4.122 16 C -0.155 4.155 17 N -0.521 5.521 18 C 0.082 3.918 19 C -0.116 4.116 20 H 0.094 0.906 21 C 0.062 3.938 22 N -0.679 5.679 23 C 0.075 3.925 24 C -0.149 4.149 25 H 0.039 0.961 26 C 0.065 3.935 27 H 0.268 0.732 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.102 0.898 33 H 0.023 0.977 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.347 0.653 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.060 -1.658 1.285 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.172 4.172 3 Si 0.750 3.250 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.107 3.893 10 H 0.023 0.977 11 C -0.059 4.059 12 C -0.127 4.127 13 C -0.143 4.143 14 C -0.155 4.155 15 C -0.139 4.139 16 C -0.173 4.173 17 N -0.246 5.246 18 C -0.046 4.046 19 C -0.135 4.135 20 H 0.112 0.888 21 C -0.067 4.067 22 N -0.308 5.308 23 C -0.054 4.054 24 C -0.170 4.170 25 H 0.057 0.943 26 C -0.062 4.062 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.158 0.842 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.120 0.880 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.163 0.837 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.746 -2.732 1.489 15.070 hybrid contribution -0.536 2.770 -0.412 2.851 sum 14.210 0.038 1.077 14.251 Atomic orbital electron populations 1.70005 1.07744 1.27987 1.51716 1.25736 0.95328 1.01868 0.94273 0.86098 0.79007 0.80344 0.79507 1.18913 1.20808 1.18527 1.20838 0.89803 0.93085 1.48691 0.94343 1.18739 0.93357 0.90358 0.86812 0.97741 1.20200 0.94851 0.94685 0.96132 1.20950 0.99605 0.94135 0.98057 1.21419 0.99148 1.00769 0.92974 1.21344 1.01023 0.93611 0.99495 1.21287 1.00096 0.95745 0.96817 1.21107 1.02249 0.99083 0.94891 1.65363 1.03820 1.53556 1.01838 1.21944 0.96540 0.97056 0.89012 1.22653 0.94936 1.01235 0.94709 0.88801 1.22209 0.89005 0.97581 0.97903 1.63517 1.04165 1.40336 1.22787 1.21643 0.94337 1.02941 0.86442 1.22456 0.98539 0.99191 0.96775 0.94271 1.21808 0.89183 1.00011 0.95238 0.92307 0.87287 0.84213 0.83340 0.84091 0.87972 0.95860 0.91880 0.88793 0.93953 0.83723 0.89559 0.90668 0.89828 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.36 13.96 21.45 0.30 -57.06 16 2 C 0.03 1.55 5.47 84.65 0.46 2.02 16 3 Si 0.93 44.04 26.53 68.60 1.82 45.86 16 4 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.26 -11.82 6.30 99.48 0.63 -11.20 16 7 C -0.49 -27.29 7.91 25.60 0.20 -27.08 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 C 0.21 10.05 1.29 43.42 0.06 10.11 16 10 H 0.01 0.24 4.42 -2.39 -0.01 0.23 16 11 C -0.06 -2.48 3.85 -19.86 -0.08 -2.55 16 12 C -0.11 -4.31 9.27 22.27 0.21 -4.11 16 13 C -0.13 -3.99 10.05 22.27 0.22 -3.76 16 14 C -0.14 -3.92 10.05 22.27 0.22 -3.70 16 15 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 16 C -0.15 -6.00 9.67 22.27 0.22 -5.79 16 17 N -0.52 -21.63 4.59 -872.80 -4.01 -25.64 16 18 C 0.08 3.32 5.42 85.14 0.46 3.78 16 19 C -0.12 -3.61 3.29 -10.02 -0.03 -3.64 16 20 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 21 C 0.06 1.61 7.31 85.14 0.62 2.23 16 22 N -0.68 -15.35 7.57 -507.64 -3.84 -19.19 16 23 C 0.08 1.73 7.46 84.61 0.63 2.36 16 24 C -0.15 -4.44 2.74 -11.21 -0.03 -4.47 16 25 H 0.04 1.31 7.90 -2.39 -0.02 1.29 16 26 C 0.07 2.22 6.29 84.62 0.53 2.75 16 27 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.11 4.54 7.89 -2.91 -0.02 4.52 16 29 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 30 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.10 3.94 8.00 -2.91 -0.02 3.92 16 33 H 0.02 1.03 6.95 -2.38 -0.02 1.01 16 34 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.35 6.39 8.94 -89.70 -0.80 5.59 16 38 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.05 1.67 7.19 -2.39 -0.02 1.65 16 Total: -1.00 -64.67 322.11 -1.68 -66.36 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.13 Total: 25.11 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 3.92 Total: -35.44 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -7.56 Total: -101.89 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.82 Total: 45.86 kcal Total: -64.67 -1.68 -66.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250826711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.740 kcal (2) G-P(sol) polarization free energy of solvation -64.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds