Wall clock time and date at job start Mon Mar 30 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46898 * 111.00169 * 2 1 4 4 C 1.46905 * 111.00093 * 123.95785 * 2 1 3 5 5 C 1.53006 * 109.46998 * 169.99968 * 4 2 1 6 6 C 1.52999 * 109.46666 * 179.97438 * 5 4 2 7 7 N 1.46899 * 109.47004 * 179.04129 * 6 5 4 8 8 C 1.47397 * 110.99807 * 293.12162 * 7 6 5 9 9 C 1.51086 * 107.93285 * 143.76028 * 8 7 6 10 10 S 1.82264 * 110.47739 * 96.73916 * 9 8 7 11 11 C 1.82612 * 104.17396 * 319.75858 * 10 9 8 12 12 C 1.50961 * 111.06095 * 319.44501 * 11 10 9 13 13 C 1.38906 * 111.00288 * 163.47585 * 7 6 5 14 14 H 1.09004 * 108.77693 * 72.56401 * 13 7 6 15 15 C 1.50695 * 108.78055 * 314.24912 * 13 7 6 16 16 H 1.08000 * 120.00238 * 354.66407 * 15 13 7 17 17 C 1.37883 * 119.99811 * 174.66123 * 15 13 7 18 18 N 1.31509 * 119.99924 * 180.02562 * 17 15 13 19 19 Si 1.86799 * 119.99841 * 0.02562 * 17 15 13 20 20 H 1.48504 * 109.47205 * 90.00116 * 19 17 15 21 21 H 1.48497 * 109.47018 * 209.99600 * 19 17 15 22 22 H 1.48494 * 109.47497 * 329.99891 * 19 17 15 23 23 H 1.09000 * 109.47162 * 56.04604 * 1 2 3 24 24 H 1.09003 * 109.47497 * 176.04238 * 1 2 3 25 25 H 1.08995 * 109.47222 * 296.04132 * 1 2 3 26 26 H 1.09001 * 109.46846 * 60.00015 * 3 2 1 27 27 H 1.08996 * 109.47292 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47524 * 300.00423 * 3 2 1 29 29 H 1.09000 * 109.47000 * 289.99701 * 4 2 1 30 30 H 1.08999 * 109.47126 * 49.99609 * 4 2 1 31 31 H 1.09000 * 109.47027 * 299.99717 * 5 4 2 32 32 H 1.08995 * 109.47005 * 59.99728 * 5 4 2 33 33 H 1.08997 * 109.47353 * 299.03701 * 6 5 4 34 34 H 1.08997 * 109.47662 * 59.04057 * 6 5 4 35 35 H 1.08997 * 109.77189 * 263.37114 * 8 7 6 36 36 H 1.09006 * 109.77078 * 24.15589 * 8 7 6 37 37 H 1.08994 * 109.30104 * 336.43329 * 9 8 7 38 38 H 1.09001 * 109.13948 * 216.94097 * 9 8 7 39 39 H 1.09004 * 109.15901 * 199.04154 * 11 10 9 40 40 H 1.08992 * 109.16254 * 79.85407 * 11 10 9 41 41 H 1.08998 * 109.52444 * 334.78338 * 12 11 10 42 42 H 1.09005 * 109.51926 * 214.60189 * 12 11 10 43 43 H 0.97004 * 119.99744 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 3.5044 -0.9554 0.9702 6 6 4.0528 -1.7527 2.1554 7 7 5.4977 -1.9543 1.9833 8 6 5.7751 -2.8333 0.8331 9 6 7.0343 -2.3372 0.1615 10 16 8.4804 -3.2847 0.7385 11 6 8.1885 -3.5005 2.5282 12 6 7.6286 -2.2402 3.1424 13 6 6.0931 -2.3350 3.1791 14 1 5.8102 -3.3643 3.3999 15 6 5.5805 -1.4445 4.2815 16 1 4.9326 -0.6129 4.0466 17 6 5.9386 -1.6914 5.5899 18 7 5.4908 -0.9145 6.5519 19 14 7.0597 -3.1293 5.9959 20 1 8.4748 -2.6808 5.9541 21 1 6.7414 -3.6368 7.3547 22 1 6.8544 -4.2132 5.0019 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0709 25 1 -0.3633 0.4511 0.9233 26 1 1.6459 1.8947 0.8900 27 1 3.0850 1.3423 0.0005 28 1 1.6459 1.8948 -0.8899 29 1 1.7975 -0.2249 2.0628 30 1 1.5089 -1.7407 1.1756 31 1 3.7023 -1.4966 0.0450 32 1 3.9909 0.0192 0.9322 33 1 3.8701 -1.2032 3.0787 34 1 3.5542 -2.7207 2.2040 35 1 5.9200 -3.8571 1.1780 36 1 4.9427 -2.7947 0.1303 37 1 7.1769 -1.2827 0.3975 38 1 6.9338 -2.4546 -0.9175 39 1 9.1307 -3.7486 3.0170 40 1 7.4822 -4.3166 2.6797 41 1 7.9263 -1.3797 2.5433 42 1 8.0111 -2.1285 4.1570 43 1 5.7431 -1.0880 7.4724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260216283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:17 Heat of formation + Delta-G solvation = 8.076568 kcal Electronic energy + Delta-G solvation = -20223.002918 eV Core-core repulsion = 17429.353468 eV Total energy + Delta-G solvation = -2793.649450 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38942 -38.46585 -35.36038 -34.35006 -32.94652 -31.76059 -28.65613 -28.45309 -26.76143 -24.69740 -23.91676 -22.79929 -21.46241 -21.23270 -19.08781 -17.96375 -16.87114 -16.71807 -16.47077 -16.18714 -15.76939 -15.69079 -15.48343 -15.01095 -14.68383 -14.58358 -14.42813 -13.69226 -13.45722 -13.26520 -13.12644 -12.98658 -12.91275 -12.69633 -12.55874 -12.52841 -12.37170 -12.14425 -11.78206 -11.66902 -11.59321 -11.26264 -10.97102 -10.71722 -10.56194 -9.32166 -8.92420 -8.64878 -8.30600 -6.33749 0.82470 1.26112 1.32301 1.40076 1.59040 2.28420 2.90449 3.02071 3.27046 3.90458 4.00826 4.05688 4.17754 4.18999 4.25691 4.28538 4.39624 4.45930 4.51909 4.54523 4.57624 4.61789 4.71125 4.77400 4.80188 4.84479 4.87272 4.92791 5.00971 5.04226 5.08393 5.13955 5.31287 5.43183 5.50300 5.58930 6.03774 6.05844 6.13423 6.42123 6.75179 6.91087 7.33021 8.83541 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.006531 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.441142 B = 4286.276875 C = 5782.566378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.554 5.554 3 C 0.020 3.980 4 C 0.060 3.940 5 C -0.093 4.093 6 C 0.067 3.933 7 N -0.547 5.547 8 C 0.058 3.942 9 C -0.057 4.057 10 S -0.300 6.300 11 C -0.073 4.073 12 C -0.118 4.118 13 C 0.211 3.789 14 H -0.027 1.027 15 C -0.510 4.510 16 H 0.056 0.944 17 C 0.019 3.981 18 N -0.942 5.942 19 Si 0.929 3.071 20 H -0.263 1.263 21 H -0.299 1.299 22 H -0.246 1.246 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.019 0.981 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.021 0.979 35 H 0.036 0.964 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.722 -2.170 -14.206 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.278 5.278 3 C -0.128 4.128 4 C -0.069 4.069 5 C -0.131 4.131 6 C -0.061 4.061 7 N -0.271 5.271 8 C -0.070 4.070 9 C -0.206 4.206 10 S -0.075 6.075 11 C -0.221 4.221 12 C -0.158 4.158 13 C 0.101 3.899 14 H -0.010 1.010 15 C -0.548 4.548 16 H 0.074 0.926 17 C -0.179 4.179 18 N -0.583 5.583 19 Si 0.755 3.245 20 H -0.189 1.189 21 H -0.227 1.227 22 H -0.170 1.170 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.144 0.856 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.509 -2.331 -15.151 15.534 hybrid contribution -1.049 -0.241 2.797 2.997 sum -3.558 -2.572 -12.355 13.112 Atomic orbital electron populations 1.22442 0.86414 1.02847 1.00816 1.62038 1.08754 1.14321 1.42687 1.22470 1.01097 0.88430 1.00797 1.22024 0.95719 0.98207 0.90917 1.21466 0.93608 1.00377 0.97693 1.22052 0.86071 0.98238 0.99690 1.58001 1.11785 1.51404 1.05889 1.22164 0.98018 0.93699 0.93127 1.23345 0.92282 1.01742 1.03199 1.86485 1.36971 1.74335 1.09732 1.23333 1.04593 1.00873 0.93311 1.21984 0.97353 0.96357 1.00080 1.18036 0.90990 0.92971 0.87915 1.01036 1.21453 1.29388 1.13377 0.90569 0.92579 1.25713 0.97405 0.98417 0.96359 1.70015 1.47097 1.40424 1.00720 0.86158 0.80009 0.81147 0.77181 1.18856 1.22663 1.17011 0.89987 0.90791 0.96089 0.96338 0.91399 0.89890 0.96280 0.90435 0.90517 0.92330 0.91097 0.96114 0.94546 0.87661 0.89343 0.85606 0.88061 0.90887 0.90737 0.92561 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.57 127.69 1.22 1.66 16 2 N -0.55 -13.13 5.02 -948.87 -4.76 -17.89 16 3 C 0.02 0.45 9.40 127.69 1.20 1.65 16 4 C 0.06 1.61 4.96 86.30 0.43 2.04 16 5 C -0.09 -2.72 5.15 30.60 0.16 -2.56 16 6 C 0.07 2.46 4.57 86.30 0.39 2.85 16 7 N -0.55 -20.73 3.67 -894.62 -3.28 -24.01 16 8 C 0.06 1.74 5.14 85.58 0.44 2.18 16 9 C -0.06 -1.59 5.85 71.36 0.42 -1.17 16 10 S -0.30 -9.26 22.05 -56.49 -1.25 -10.50 16 11 C -0.07 -2.55 5.61 71.32 0.40 -2.15 16 12 C -0.12 -4.87 4.05 30.23 0.12 -4.74 16 13 C 0.21 9.40 1.10 45.90 0.05 9.45 16 14 H -0.03 -1.29 6.05 -2.39 -0.01 -1.31 16 15 C -0.51 -27.51 7.96 25.60 0.20 -27.31 16 16 H 0.06 3.35 6.12 -2.91 -0.02 3.33 16 17 C 0.02 1.07 5.39 84.66 0.46 1.52 16 18 N -0.94 -57.17 13.96 21.45 0.30 -56.87 16 19 Si 0.93 43.34 24.39 68.60 1.67 45.01 16 20 H -0.26 -11.68 6.79 99.48 0.68 -11.00 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 22 H -0.25 -10.73 6.43 99.48 0.64 -10.09 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 25 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.02 0.42 8.14 -2.39 -0.02 0.41 16 27 H 0.07 1.60 6.30 -2.39 -0.02 1.58 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16 30 H 0.08 1.96 8.06 -2.39 -0.02 1.95 16 31 H 0.08 2.01 6.35 -2.39 -0.02 2.00 16 32 H 0.06 1.83 6.47 -2.39 -0.02 1.81 16 33 H 0.07 3.20 5.00 -2.39 -0.01 3.19 16 34 H 0.02 0.74 8.11 -2.39 -0.02 0.72 16 35 H 0.04 1.17 6.65 -2.39 -0.02 1.16 16 36 H 0.11 2.66 5.93 -2.38 -0.01 2.65 16 37 H 0.09 2.69 7.56 -2.39 -0.02 2.67 16 38 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 40 H 0.07 2.61 6.82 -2.39 -0.02 2.59 16 41 H 0.07 3.07 7.18 -2.39 -0.02 3.05 16 42 H 0.06 2.50 4.02 -2.38 -0.01 2.49 16 43 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -60.78 322.19 -0.95 -61.72 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.88 Total: 19.11 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 5.49 Total: -16.57 kcal Atomic # 7 Polarization: -91.03 SS G_CDS: -7.74 Total: -98.77 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.67 Total: 45.01 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -1.25 Total: -10.50 kcal Total: -60.78 -0.95 -61.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260216283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.801 kcal (2) G-P(sol) polarization free energy of solvation -60.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds