Wall clock time and date at job start Mon Mar 30 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46704 * 2 1 4 4 C 1.50697 * 109.46930 * 120.00104 * 2 1 3 5 5 H 1.08001 * 119.99948 * 119.99942 * 4 2 1 6 6 C 1.37874 * 120.00100 * 300.00157 * 4 2 1 7 7 N 1.31515 * 120.00283 * 180.02562 * 6 4 2 8 8 Si 1.86810 * 120.00040 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46685 * 90.00196 * 8 6 4 10 10 H 1.48499 * 109.46892 * 210.00282 * 8 6 4 11 11 H 1.48497 * 109.46946 * 330.00199 * 8 6 4 12 12 N 1.46896 * 109.46897 * 240.00047 * 2 1 3 13 13 C 1.46900 * 111.00198 * 306.04609 * 12 2 1 14 14 C 1.46902 * 111.00088 * 70.00409 * 12 2 1 15 15 C 1.52998 * 109.47396 * 72.13140 * 14 12 2 16 16 H 1.09002 * 109.46540 * 301.13838 * 15 14 12 17 17 O 1.42900 * 109.47397 * 61.13602 * 15 14 12 18 18 C 1.53002 * 109.47109 * 181.14247 * 15 14 12 19 19 N 1.46898 * 109.47175 * 179.97438 * 18 15 14 20 20 C 1.47014 * 110.99881 * 293.63266 * 19 18 15 21 21 C 1.53104 * 109.25574 * 177.60624 * 20 19 18 22 22 O 1.43013 * 109.25798 * 56.85139 * 21 20 19 23 23 C 1.43020 * 113.73690 * 301.32377 * 22 21 20 24 24 C 1.47010 * 111.00069 * 169.99391 * 19 18 15 25 25 H 1.08995 * 109.47480 * 299.99928 * 1 2 3 26 26 H 1.09007 * 109.46959 * 60.00125 * 1 2 3 27 27 H 1.09001 * 109.47119 * 179.97438 * 1 2 3 28 28 H 0.96996 * 120.00421 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46931 * 189.63720 * 13 12 2 30 30 H 1.08997 * 109.47089 * 69.63513 * 13 12 2 31 31 H 1.08998 * 109.46856 * 309.63214 * 13 12 2 32 32 H 1.08999 * 109.47261 * 192.13245 * 14 12 2 33 33 H 1.09003 * 109.46501 * 312.12672 * 14 12 2 34 34 H 0.96708 * 113.99276 * 60.00159 * 17 15 14 35 35 H 1.09005 * 109.46839 * 299.99715 * 18 15 14 36 36 H 1.09000 * 109.47155 * 59.99452 * 18 15 14 37 37 H 1.08995 * 109.50920 * 297.53961 * 20 19 18 38 38 H 1.09008 * 109.50651 * 57.67355 * 20 19 18 39 39 H 1.09003 * 109.50602 * 296.91012 * 21 20 19 40 40 H 1.09001 * 109.53754 * 176.80623 * 21 20 19 41 41 H 1.09004 * 109.50848 * 298.74034 * 23 22 21 42 42 H 1.08996 * 109.54279 * 178.62899 * 23 22 21 43 43 H 1.08991 * 109.50927 * 302.32748 * 24 19 18 44 44 H 1.09000 * 109.50368 * 62.46438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0973 -2.4090 15 6 2.6879 1.3079 -2.4442 16 1 2.5306 1.9143 -1.5521 17 8 4.0447 0.8611 -2.4833 18 6 2.3907 2.1458 -3.6894 19 7 3.2879 3.3085 -3.7228 20 6 2.9993 4.2287 -2.6131 21 6 3.9934 5.3925 -2.6509 22 8 3.9150 6.0387 -3.9243 23 6 4.1911 5.1717 -5.0277 24 6 3.1991 4.0055 -5.0141 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9039 -0.5276 4.4375 29 1 1.9374 -2.5881 -2.1013 30 1 0.3727 -1.9514 -1.5403 31 1 1.5586 -2.5633 -0.3623 32 1 1.9244 -0.5198 -3.2910 33 1 0.7176 0.4379 -2.3995 34 1 4.2566 0.3144 -3.2523 35 1 2.5479 1.5394 -4.5814 36 1 1.3558 2.4866 -3.6595 37 1 1.9845 4.6134 -2.7138 38 1 3.0959 3.6981 -1.6658 39 1 5.0036 5.0135 -2.4965 40 1 3.7485 6.1067 -1.8647 41 1 5.2071 4.7862 -4.9425 42 1 4.0890 5.7255 -5.9610 43 1 3.4414 3.3122 -5.8194 44 1 2.1875 4.3867 -5.1531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304817124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:23 Heat of formation + Delta-G solvation = -67.605728 kcal Electronic energy + Delta-G solvation = -22593.017027 eV Core-core repulsion = 19353.332875 eV Total energy + Delta-G solvation = -3239.684152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77426 -38.25121 -36.46673 -34.99025 -32.58108 -31.34766 -30.52493 -29.57797 -27.60620 -25.27695 -25.03449 -24.19549 -23.09355 -21.40759 -20.44607 -19.11096 -16.90712 -16.58489 -16.34930 -15.87667 -15.70917 -15.28297 -15.16649 -15.02237 -14.43807 -14.32236 -13.83924 -13.69272 -13.18905 -13.01345 -12.55442 -12.25528 -12.07628 -12.02051 -11.86049 -11.53305 -11.44628 -11.38063 -11.04034 -10.81559 -10.69451 -10.64720 -10.23146 -9.96208 -9.87758 -9.52008 -9.46136 -9.02055 -8.56784 -8.43900 -7.29957 -6.04545 -4.01641 3.24124 3.33288 3.37343 3.54958 3.74940 4.39766 4.53786 4.71063 4.80908 4.85737 5.00169 5.01105 5.13067 5.18233 5.25697 5.34857 5.39634 5.49507 5.52096 5.55791 5.59457 5.62293 5.81190 5.86188 5.88752 6.04870 6.19243 6.22226 6.24507 6.34162 6.53343 6.68596 6.82013 6.84115 6.86328 7.00155 7.15713 7.65751 7.92570 8.07053 8.19361 8.68577 9.04514 9.57627 11.08868 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.005146 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.758477 B = 5440.237325 C = 6203.306330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.181 3.819 3 H 0.038 0.962 4 C -0.497 4.497 5 H 0.082 0.918 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.885 3.115 9 H -0.282 1.282 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.511 5.511 13 C 0.033 3.967 14 C 0.019 3.981 15 C 0.119 3.881 16 H 0.098 0.902 17 O -0.527 6.527 18 C 0.023 3.977 19 N -0.523 5.523 20 C 0.014 3.986 21 C 0.065 3.935 22 O -0.389 6.389 23 C 0.065 3.935 24 C 0.017 3.983 25 H 0.044 0.956 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.263 0.737 29 H 0.046 0.954 30 H 0.012 0.988 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.362 0.638 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.027 8.767 -17.743 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.073 3.927 3 H 0.055 0.945 4 C -0.535 4.535 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.234 5.234 13 C -0.115 4.115 14 C -0.111 4.111 15 C 0.058 3.942 16 H 0.115 0.885 17 O -0.330 6.330 18 C -0.105 4.105 19 N -0.248 5.248 20 C -0.114 4.114 21 C -0.012 4.012 22 O -0.308 6.308 23 C -0.013 4.013 24 C -0.111 4.111 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.207 0.793 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.021 9.074 -16.896 19.205 hybrid contribution -2.637 0.546 -0.447 2.730 sum -1.615 9.620 -17.343 19.898 Atomic orbital electron populations 1.22847 1.02016 1.01060 0.98698 1.19793 0.88274 0.95368 0.89273 0.94463 1.20917 1.31186 1.13693 0.87697 0.89971 1.24911 0.95954 0.96488 0.95873 1.69873 1.45806 1.40342 0.97827 0.86914 0.80510 0.84102 0.76894 1.20898 1.22353 1.19579 1.62074 1.58318 1.01983 1.01027 1.22285 0.95389 0.91334 1.02482 1.22765 0.97320 0.95924 0.95045 1.21866 0.83035 0.92974 0.96297 0.88482 1.86692 1.26003 1.71458 1.48827 1.22912 0.94349 0.92809 1.00472 1.62113 1.53071 1.07538 1.02076 1.22867 0.97959 0.94277 0.96342 1.22678 0.99129 0.94031 0.85374 1.87959 1.91596 1.36464 1.14767 1.22633 0.98054 0.90673 0.89891 1.22794 0.98917 0.96760 0.92666 0.93699 0.95531 0.92475 0.92681 0.93533 0.96971 0.89887 0.91761 0.94820 0.79315 0.90460 0.94252 0.94239 0.88734 0.91851 0.88422 0.92151 0.88749 0.89795 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.05 7.95 37.16 0.30 -3.75 16 2 C 0.18 4.23 1.80 -68.86 -0.12 4.10 16 3 H 0.04 0.92 5.45 -51.93 -0.28 0.64 16 4 C -0.50 -13.91 8.41 -34.44 -0.29 -14.20 16 5 H 0.08 2.53 7.42 -52.49 -0.39 2.14 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 8 Si 0.88 21.96 24.37 -169.99 -4.14 17.82 16 9 H -0.28 -6.83 6.87 56.52 0.39 -6.44 16 10 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 12 N -0.51 -10.34 4.54 -236.28 -1.07 -11.42 16 13 C 0.03 0.62 8.51 60.06 0.51 1.13 16 14 C 0.02 0.31 4.52 -3.82 -0.02 0.29 16 15 C 0.12 1.82 2.87 -26.73 -0.08 1.75 16 16 H 0.10 1.76 4.94 -51.93 -0.26 1.50 16 17 O -0.53 -8.71 13.09 -35.23 -0.46 -9.17 16 18 C 0.02 0.28 4.62 -3.82 -0.02 0.26 16 19 N -0.52 -6.46 4.59 -234.30 -1.08 -7.53 16 20 C 0.01 0.17 5.44 -3.71 -0.02 0.15 16 21 C 0.06 0.76 7.01 37.21 0.26 1.02 16 22 O -0.39 -4.77 10.83 -35.23 -0.38 -5.16 16 23 C 0.06 0.63 7.01 37.21 0.26 0.90 16 24 C 0.02 0.17 5.65 -3.71 -0.02 0.15 16 25 H 0.04 1.02 3.27 -51.93 -0.17 0.85 16 26 H 0.03 0.49 6.49 -51.93 -0.34 0.16 16 27 H 0.06 1.21 6.54 -51.93 -0.34 0.87 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.01 0.21 6.80 -51.93 -0.35 -0.15 16 31 H 0.08 1.75 6.65 -51.93 -0.35 1.40 16 32 H 0.06 0.88 7.99 -51.93 -0.42 0.46 16 33 H 0.03 0.54 6.24 -51.93 -0.32 0.21 16 34 H 0.36 4.61 9.05 45.56 0.41 5.02 16 35 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 36 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 1.34 6.38 -51.92 -0.33 1.01 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 44 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -31.93 327.91 -7.29 -39.21 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.53 Total: 4.38 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 0.66 Total: -6.31 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -1.38 Total: -45.72 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.84 Total: -14.32 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.93 -7.29 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304817124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.392 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds