Wall clock time and date at job start Mon Mar 30 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46704 * 2 1 4 4 C 1.50697 * 109.46930 * 120.00104 * 2 1 3 5 5 H 1.08001 * 119.99948 * 119.99942 * 4 2 1 6 6 C 1.37874 * 120.00100 * 300.00157 * 4 2 1 7 7 N 1.31515 * 120.00283 * 180.02562 * 6 4 2 8 8 Si 1.86810 * 120.00040 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46685 * 90.00196 * 8 6 4 10 10 H 1.48499 * 109.46892 * 210.00282 * 8 6 4 11 11 H 1.48497 * 109.46946 * 330.00199 * 8 6 4 12 12 N 1.46896 * 109.46897 * 240.00047 * 2 1 3 13 13 C 1.46900 * 111.00198 * 306.04609 * 12 2 1 14 14 C 1.46902 * 111.00088 * 70.00409 * 12 2 1 15 15 C 1.52998 * 109.47396 * 72.13140 * 14 12 2 16 16 H 1.09002 * 109.46540 * 301.13838 * 15 14 12 17 17 O 1.42900 * 109.47397 * 61.13602 * 15 14 12 18 18 C 1.53002 * 109.47109 * 181.14247 * 15 14 12 19 19 N 1.46898 * 109.47175 * 179.97438 * 18 15 14 20 20 C 1.47014 * 110.99881 * 293.63266 * 19 18 15 21 21 C 1.53104 * 109.25574 * 177.60624 * 20 19 18 22 22 O 1.43013 * 109.25798 * 56.85139 * 21 20 19 23 23 C 1.43020 * 113.73690 * 301.32377 * 22 21 20 24 24 C 1.47010 * 111.00069 * 169.99391 * 19 18 15 25 25 H 1.08995 * 109.47480 * 299.99928 * 1 2 3 26 26 H 1.09007 * 109.46959 * 60.00125 * 1 2 3 27 27 H 1.09001 * 109.47119 * 179.97438 * 1 2 3 28 28 H 0.96996 * 120.00421 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46931 * 189.63720 * 13 12 2 30 30 H 1.08997 * 109.47089 * 69.63513 * 13 12 2 31 31 H 1.08998 * 109.46856 * 309.63214 * 13 12 2 32 32 H 1.08999 * 109.47261 * 192.13245 * 14 12 2 33 33 H 1.09003 * 109.46501 * 312.12672 * 14 12 2 34 34 H 0.96708 * 113.99276 * 60.00159 * 17 15 14 35 35 H 1.09005 * 109.46839 * 299.99715 * 18 15 14 36 36 H 1.09000 * 109.47155 * 59.99452 * 18 15 14 37 37 H 1.08995 * 109.50920 * 297.53961 * 20 19 18 38 38 H 1.09008 * 109.50651 * 57.67355 * 20 19 18 39 39 H 1.09003 * 109.50602 * 296.91012 * 21 20 19 40 40 H 1.09001 * 109.53754 * 176.80623 * 21 20 19 41 41 H 1.09004 * 109.50848 * 298.74034 * 23 22 21 42 42 H 1.08996 * 109.54279 * 178.62899 * 23 22 21 43 43 H 1.08991 * 109.50927 * 302.32748 * 24 19 18 44 44 H 1.09000 * 109.50368 * 62.46438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0973 -2.4090 15 6 2.6879 1.3079 -2.4442 16 1 2.5306 1.9143 -1.5521 17 8 4.0447 0.8611 -2.4833 18 6 2.3907 2.1458 -3.6894 19 7 3.2879 3.3085 -3.7228 20 6 2.9993 4.2287 -2.6131 21 6 3.9934 5.3925 -2.6509 22 8 3.9150 6.0387 -3.9243 23 6 4.1911 5.1717 -5.0277 24 6 3.1991 4.0055 -5.0141 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9039 -0.5276 4.4375 29 1 1.9374 -2.5881 -2.1013 30 1 0.3727 -1.9514 -1.5403 31 1 1.5586 -2.5633 -0.3623 32 1 1.9244 -0.5198 -3.2910 33 1 0.7176 0.4379 -2.3995 34 1 4.2566 0.3144 -3.2523 35 1 2.5479 1.5394 -4.5814 36 1 1.3558 2.4866 -3.6595 37 1 1.9845 4.6134 -2.7138 38 1 3.0959 3.6981 -1.6658 39 1 5.0036 5.0135 -2.4965 40 1 3.7485 6.1067 -1.8647 41 1 5.2071 4.7862 -4.9425 42 1 4.0890 5.7255 -5.9610 43 1 3.4414 3.3122 -5.8194 44 1 2.1875 4.3867 -5.1531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304817124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:23 Heat of formation + Delta-G solvation = -96.028796 kcal Electronic energy + Delta-G solvation = -22594.249544 eV Core-core repulsion = 19353.332875 eV Total energy + Delta-G solvation = -3240.916669 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.71150 -39.60376 -37.77605 -36.06186 -34.63718 -32.20953 -31.99579 -31.06873 -28.71885 -27.23831 -26.30704 -25.08950 -24.55504 -22.58509 -21.34854 -20.79569 -18.74920 -17.78764 -17.47417 -17.15065 -16.83229 -16.57572 -16.19500 -16.01724 -16.00044 -15.53670 -15.18025 -14.96793 -14.74311 -14.42038 -14.12524 -13.71184 -13.52684 -13.27244 -13.09755 -12.89931 -12.71851 -12.48802 -12.35696 -12.32100 -12.20734 -11.93602 -11.61951 -11.54359 -11.34197 -11.08808 -10.86930 -10.75195 -10.52179 -9.34989 -8.83961 -8.27170 -6.28486 1.25903 1.32247 1.41921 2.30583 2.63420 2.92601 3.06847 3.27388 3.70794 3.85886 3.90742 3.99900 4.13375 4.16868 4.20255 4.33925 4.34693 4.41179 4.49065 4.50307 4.58014 4.60792 4.61952 4.67159 4.71626 4.74712 4.79346 4.85987 4.89985 5.00536 5.02327 5.18247 5.24472 5.40927 5.65836 5.89351 5.98238 6.07680 6.15730 6.45626 6.72861 6.78272 7.15831 7.35395 8.90184 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.005146 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.758477 B = 5440.237325 C = 6203.306330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.187 3.813 3 H 0.027 0.973 4 C -0.498 4.498 5 H 0.036 0.964 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.947 3.053 9 H -0.267 1.267 10 H -0.299 1.299 11 H -0.252 1.252 12 N -0.533 5.533 13 C 0.038 3.962 14 C 0.022 3.978 15 C 0.123 3.877 16 H 0.064 0.936 17 O -0.552 6.552 18 C 0.034 3.966 19 N -0.536 5.536 20 C 0.015 3.985 21 C 0.067 3.933 22 O -0.404 6.404 23 C 0.059 3.941 24 C 0.019 3.981 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.264 0.736 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.378 0.622 35 H 0.103 0.897 36 H 0.044 0.956 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.119 0.881 43 H 0.105 0.895 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 10.069 -20.739 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.078 3.922 3 H 0.045 0.955 4 C -0.536 4.536 5 H 0.055 0.945 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.775 3.225 9 H -0.194 1.194 10 H -0.226 1.226 11 H -0.176 1.176 12 N -0.256 5.256 13 C -0.110 4.110 14 C -0.107 4.107 15 C 0.062 3.938 16 H 0.082 0.918 17 O -0.357 6.357 18 C -0.094 4.094 19 N -0.261 5.261 20 C -0.113 4.113 21 C -0.010 4.010 22 O -0.323 6.323 23 C -0.017 4.017 24 C -0.109 4.109 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.225 0.775 35 H 0.121 0.879 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.126 0.874 41 H 0.077 0.923 42 H 0.137 0.863 43 H 0.123 0.877 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.273 10.370 -19.942 22.479 hybrid contribution -2.116 0.043 0.408 2.155 sum -2.389 10.413 -19.534 22.264 Atomic orbital electron populations 1.22701 1.00103 1.01421 0.99783 1.19512 0.89563 0.94241 0.88875 0.95503 1.21192 1.29991 1.12350 0.90097 0.94536 1.25755 0.97605 0.99833 0.95445 1.70036 1.48022 1.42582 0.98486 0.85884 0.79094 0.80307 0.77215 1.19359 1.22640 1.17588 1.61933 1.59067 1.02878 1.01674 1.22224 0.96732 0.90566 1.01486 1.22857 0.97837 0.96057 0.93913 1.21741 0.82489 0.92816 0.96704 0.91814 1.86650 1.26773 1.72076 1.50232 1.22767 0.94478 0.92591 0.99579 1.62098 1.53318 1.07790 1.02908 1.22791 0.98191 0.94495 0.95854 1.22663 0.98476 0.93989 0.85867 1.87941 1.91669 1.37386 1.15273 1.22848 0.97946 0.90820 0.90099 1.22866 0.98995 0.97089 0.91923 0.94771 0.92124 0.92528 0.92663 0.90691 0.95357 0.93652 0.88603 0.93951 0.77463 0.87869 0.93767 0.94337 0.90862 0.92501 0.87367 0.92304 0.86281 0.87656 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.43 7.95 71.98 0.57 -6.86 16 2 C 0.19 8.65 1.80 44.17 0.08 8.73 16 3 H 0.03 1.32 5.45 -2.39 -0.01 1.31 16 4 C -0.50 -28.79 8.41 25.60 0.22 -28.58 16 5 H 0.04 2.38 7.42 -2.91 -0.02 2.36 16 6 C 0.01 0.61 5.45 84.65 0.46 1.07 16 7 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 8 Si 0.95 45.53 24.37 68.60 1.67 47.20 16 9 H -0.27 -12.16 6.87 99.48 0.68 -11.48 16 10 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 11 H -0.25 -11.22 6.53 99.48 0.65 -10.57 16 12 N -0.53 -20.91 4.54 -901.46 -4.10 -25.01 16 13 C 0.04 1.36 8.51 127.69 1.09 2.45 16 14 C 0.02 0.64 4.52 86.30 0.39 1.03 16 15 C 0.12 3.54 2.87 30.59 0.09 3.63 16 16 H 0.06 2.28 4.94 -2.39 -0.01 2.27 16 17 O -0.55 -17.51 13.09 -148.98 -1.95 -19.46 16 18 C 0.03 0.73 4.62 86.30 0.40 1.12 16 19 N -0.54 -12.04 4.59 -895.20 -4.11 -16.15 16 20 C 0.02 0.37 5.44 86.32 0.47 0.84 16 21 C 0.07 1.51 7.01 72.02 0.50 2.01 16 22 O -0.40 -9.21 10.83 -148.98 -1.61 -10.82 16 23 C 0.06 1.02 7.01 72.02 0.50 1.52 16 24 C 0.02 0.32 5.65 86.32 0.49 0.81 16 25 H 0.03 1.46 3.27 -2.39 -0.01 1.46 16 26 H 0.06 2.06 6.49 -2.38 -0.02 2.04 16 27 H 0.06 2.30 6.54 -2.39 -0.02 2.28 16 28 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.03 0.91 6.80 -2.39 -0.02 0.89 16 31 H 0.04 1.95 6.65 -2.39 -0.02 1.93 16 32 H 0.10 2.18 7.99 -2.39 -0.02 2.16 16 33 H 0.04 1.17 6.24 -2.39 -0.01 1.16 16 34 H 0.38 8.77 9.05 -74.05 -0.67 8.10 16 35 H 0.10 1.66 8.04 -2.38 -0.02 1.64 16 36 H 0.04 0.91 8.12 -2.39 -0.02 0.89 16 37 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 2.10 6.38 -2.38 -0.02 2.09 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.11 1.35 8.09 -2.39 -0.02 1.33 16 44 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -71.44 327.91 -4.30 -75.75 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.24 Total: 20.81 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 5.26 Total: -12.22 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -7.91 Total: -101.25 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -3.56 Total: -30.28 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.20 kcal Total: -71.44 -4.30 -75.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304817124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.283 kcal (2) G-P(sol) polarization free energy of solvation -71.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds