Wall clock time and date at job start Mon Mar 30 2020 05:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00340 * 2 1 4 4 C 1.52990 * 109.47451 * 179.97438 * 3 2 1 5 5 C 1.52999 * 110.29086 * 300.70087 * 4 3 2 6 6 O 1.42897 * 109.47172 * 59.29533 * 5 4 3 7 7 C 1.42896 * 114.00195 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47270 * 180.02562 * 7 6 5 9 9 O 1.21295 * 119.99886 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00110 * 180.02562 * 8 7 6 11 11 C 1.37092 * 120.00310 * 179.97438 * 10 8 7 12 12 H 1.08005 * 119.99734 * 359.72414 * 11 10 8 13 13 C 1.38955 * 120.00445 * 180.02562 * 11 10 8 14 14 N 1.31408 * 119.99445 * 359.71974 * 13 11 10 15 15 Si 1.86798 * 119.99993 * 179.72627 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99619 * 15 13 11 17 17 H 1.48508 * 109.46609 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99204 * 15 13 11 19 19 C 1.54261 * 110.32421 * 178.57199 * 4 3 2 20 20 C 1.54383 * 105.06212 * 241.00116 * 19 4 3 21 21 N 1.48559 * 104.59359 * 23.85547 * 20 19 4 22 22 C 1.48725 * 104.28640 * 320.57113 * 21 20 19 23 23 H 1.09005 * 109.47289 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47218 * 300.00275 * 1 2 3 25 25 H 1.09004 * 109.47155 * 60.00349 * 1 2 3 26 26 H 1.09005 * 109.47032 * 59.99060 * 3 2 1 27 27 H 1.09008 * 109.47013 * 299.99855 * 3 2 1 28 28 H 1.09000 * 109.46729 * 299.29814 * 5 4 3 29 29 H 1.09001 * 109.47357 * 179.30184 * 5 4 3 30 30 H 1.08998 * 109.46963 * 59.99890 * 7 6 5 31 31 H 1.09001 * 109.47051 * 300.00119 * 7 6 5 32 32 H 0.97004 * 120.00041 * 0.02562 * 10 8 7 33 33 H 0.97000 * 119.99412 * 180.02562 * 14 13 11 34 34 H 1.09002 * 110.32296 * 359.89806 * 19 4 3 35 35 H 1.08994 * 110.32564 * 122.00579 * 19 4 3 36 36 H 1.09002 * 110.41253 * 142.62886 * 20 19 4 37 37 H 1.08996 * 110.41597 * 265.07264 * 20 19 4 38 38 H 1.00901 * 111.00146 * 200.96223 * 21 20 19 39 39 H 1.08997 * 110.38734 * 280.63851 * 22 21 20 40 40 H 1.08997 * 110.50910 * 158.14892 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0060 0.4126 1.2349 6 8 3.4211 -0.8913 1.2328 7 6 3.7975 -1.6990 2.3498 8 6 3.1272 -3.0446 2.2453 9 8 2.3984 -3.2879 1.3068 10 7 3.3367 -3.9775 3.1953 11 6 2.7265 -5.2014 3.1005 12 1 2.0743 -5.4166 2.2669 13 6 2.9420 -6.1630 4.0802 14 7 3.7352 -5.9010 5.0946 15 14 2.1045 -7.8280 3.9550 16 1 2.5206 -8.4981 2.6968 17 1 2.4964 -8.6676 5.1156 18 1 0.6312 -7.6420 3.9530 19 6 4.1837 2.5839 -0.0354 20 6 5.0061 2.6115 -1.3417 21 7 4.3598 1.5960 -2.2124 22 6 4.0183 0.4830 -1.2870 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6887 1.8464 -0.8901 28 1 3.7010 0.9461 2.1352 29 1 5.0922 0.3237 1.2156 30 1 3.4880 -1.2091 3.2730 31 1 4.8794 -1.8317 2.3541 32 1 3.9187 -3.7825 3.9465 33 1 3.8860 -6.5724 5.7783 34 1 3.4153 3.3568 -0.0554 35 1 4.8357 2.7214 0.8271 36 1 4.9530 3.5974 -1.8036 37 1 6.0427 2.3386 -1.1442 38 1 4.9914 1.2848 -2.9351 39 1 4.8999 -0.1240 -1.0814 40 1 3.2219 -0.1317 -1.7065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307778898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:00 Heat of formation + Delta-G solvation = -120.054889 kcal Electronic energy + Delta-G solvation = -21759.829691 eV Core-core repulsion = 18382.038078 eV Total energy + Delta-G solvation = -3377.791613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.65781 -38.17604 -36.86070 -36.43286 -33.80919 -32.09738 -31.16790 -29.33793 -27.77522 -26.69550 -25.16829 -24.49450 -23.99707 -21.62939 -19.49428 -19.02697 -17.85987 -16.78738 -16.39818 -15.92272 -15.73341 -15.58920 -15.36503 -14.90862 -14.50362 -14.24257 -13.76138 -13.54738 -13.35853 -13.05154 -12.48605 -12.37297 -12.17313 -11.73065 -11.60850 -11.54146 -11.46593 -11.23430 -11.00522 -10.94772 -10.63663 -10.41158 -10.38219 -10.16601 -9.45239 -9.25842 -9.12027 -8.69267 -8.22088 -7.90883 -6.36668 -3.77192 3.24126 3.28843 3.33276 3.73019 3.97746 3.99209 4.20151 4.31596 4.51422 4.78366 4.87033 5.06275 5.13250 5.23434 5.29297 5.40485 5.46531 5.52226 5.54811 5.58038 5.64085 5.66837 5.68897 5.74377 5.80618 5.94231 5.97999 6.02671 6.10451 6.28448 6.33022 6.61925 7.16701 7.54662 7.60026 7.64689 8.11837 8.68482 9.23820 9.59261 10.12532 10.81452 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.030854 B = 0.003901 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.285290 B = 7175.818273 C = 7563.459590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.348 6.348 3 C 0.080 3.920 4 C -0.056 4.056 5 C 0.072 3.928 6 O -0.328 6.328 7 C 0.052 3.948 8 C 0.447 3.553 9 O -0.566 6.566 10 N -0.566 5.566 11 C -0.297 4.297 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.905 5.905 15 Si 0.931 3.069 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.113 4.113 20 C 0.035 3.965 21 N -0.671 5.671 22 C 0.055 3.945 23 H 0.087 0.913 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.392 0.608 33 H 0.271 0.729 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.336 0.664 39 H 0.045 0.955 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.421 17.510 -7.241 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.265 6.265 3 C 0.002 3.998 4 C -0.057 4.057 5 C -0.006 4.006 6 O -0.245 6.245 7 C -0.029 4.029 8 C 0.232 3.768 9 O -0.449 6.449 10 N -0.205 5.205 11 C -0.426 4.426 12 H 0.120 0.880 13 C -0.180 4.180 14 N -0.546 5.546 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.151 4.151 20 C -0.094 4.094 21 N -0.299 5.299 22 C -0.074 4.074 23 H 0.105 0.895 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.151 0.849 39 H 0.063 0.937 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.278 17.299 -7.936 19.075 hybrid contribution 0.939 -0.757 1.071 1.613 sum 2.217 16.541 -6.865 18.046 Atomic orbital electron populations 1.22669 0.82177 1.02838 0.98486 1.88265 1.18223 1.25144 1.94915 1.22370 0.91888 0.86240 0.99263 1.21307 0.94897 0.94429 0.95061 1.22502 0.96060 0.85701 0.96304 1.88254 1.69672 1.22982 1.43601 1.22150 0.98333 0.92532 0.89893 1.19553 0.86511 0.85438 0.85337 1.90556 1.40405 1.80192 1.33719 1.41750 1.43757 1.12613 1.22348 1.19649 1.25118 0.88941 1.08886 0.87951 1.25240 0.97347 1.00041 0.95347 1.69607 1.37169 1.35987 1.11863 0.85914 0.79505 0.81146 0.77623 1.19907 1.21021 1.19917 1.22306 0.99418 0.95661 0.97677 1.22896 0.95910 0.97304 0.93331 1.63783 1.43174 1.11216 1.11754 1.22925 1.00745 0.92551 0.91200 0.89462 0.94981 0.95143 0.94225 0.93258 0.93706 0.93928 0.92366 0.92486 0.77523 0.91899 0.90458 0.90695 0.90210 0.94166 0.84903 0.93711 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -6.06 8.06 -57.07 -0.46 -6.52 16 3 C 0.08 1.08 4.60 37.15 0.17 1.25 16 4 C -0.06 -0.71 0.73 -153.13 -0.11 -0.82 16 5 C 0.07 1.02 4.51 37.16 0.17 1.19 16 6 O -0.33 -6.30 7.65 -65.47 -0.50 -6.80 16 7 C 0.05 1.00 6.42 36.01 0.23 1.23 16 8 C 0.45 11.26 7.86 -10.99 -0.09 11.18 16 9 O -0.57 -16.55 16.08 -14.36 -0.23 -16.78 16 10 N -0.57 -14.86 5.29 -10.96 -0.06 -14.92 16 11 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 12 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 15 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.11 -1.05 6.30 -25.35 -0.16 -1.21 16 20 C 0.04 0.31 7.47 -2.18 -0.02 0.30 16 21 N -0.67 -7.30 7.62 -109.53 -0.84 -8.14 16 22 C 0.05 0.73 6.26 -2.09 -0.01 0.72 16 23 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.08 0.66 7.71 -51.93 -0.40 0.26 16 35 H 0.07 0.60 7.71 -51.93 -0.40 0.20 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.34 3.12 8.92 -39.29 -0.35 2.77 16 39 H 0.04 0.62 7.85 -51.93 -0.41 0.21 16 40 H 0.10 1.54 7.37 -51.93 -0.38 1.16 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -33.53 331.41 -6.76 -40.29 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.42 Total: 8.43 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 1.05 Total: 7.31 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.17 Total: -47.31 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -1.19 Total: -30.09 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.53 -6.76 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307778898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.766 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds