Wall clock time and date at job start Mon Mar 30 2020 05:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00340 * 2 1 4 4 C 1.52990 * 109.47451 * 179.97438 * 3 2 1 5 5 C 1.52999 * 110.29086 * 300.70087 * 4 3 2 6 6 O 1.42897 * 109.47172 * 59.29533 * 5 4 3 7 7 C 1.42896 * 114.00195 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47270 * 180.02562 * 7 6 5 9 9 O 1.21295 * 119.99886 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00110 * 180.02562 * 8 7 6 11 11 C 1.37092 * 120.00310 * 179.97438 * 10 8 7 12 12 H 1.08005 * 119.99734 * 359.72414 * 11 10 8 13 13 C 1.38955 * 120.00445 * 180.02562 * 11 10 8 14 14 N 1.31408 * 119.99445 * 359.71974 * 13 11 10 15 15 Si 1.86798 * 119.99993 * 179.72627 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99619 * 15 13 11 17 17 H 1.48508 * 109.46609 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99204 * 15 13 11 19 19 C 1.54261 * 110.32421 * 178.57199 * 4 3 2 20 20 C 1.54383 * 105.06212 * 241.00116 * 19 4 3 21 21 N 1.48559 * 104.59359 * 23.85547 * 20 19 4 22 22 C 1.48725 * 104.28640 * 320.57113 * 21 20 19 23 23 H 1.09005 * 109.47289 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47218 * 300.00275 * 1 2 3 25 25 H 1.09004 * 109.47155 * 60.00349 * 1 2 3 26 26 H 1.09005 * 109.47032 * 59.99060 * 3 2 1 27 27 H 1.09008 * 109.47013 * 299.99855 * 3 2 1 28 28 H 1.09000 * 109.46729 * 299.29814 * 5 4 3 29 29 H 1.09001 * 109.47357 * 179.30184 * 5 4 3 30 30 H 1.08998 * 109.46963 * 59.99890 * 7 6 5 31 31 H 1.09001 * 109.47051 * 300.00119 * 7 6 5 32 32 H 0.97004 * 120.00041 * 0.02562 * 10 8 7 33 33 H 0.97000 * 119.99412 * 180.02562 * 14 13 11 34 34 H 1.09002 * 110.32296 * 359.89806 * 19 4 3 35 35 H 1.08994 * 110.32564 * 122.00579 * 19 4 3 36 36 H 1.09002 * 110.41253 * 142.62886 * 20 19 4 37 37 H 1.08996 * 110.41597 * 265.07264 * 20 19 4 38 38 H 1.00901 * 111.00146 * 200.96223 * 21 20 19 39 39 H 1.08997 * 110.38734 * 280.63851 * 22 21 20 40 40 H 1.08997 * 110.50910 * 158.14892 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0060 0.4126 1.2349 6 8 3.4211 -0.8913 1.2328 7 6 3.7975 -1.6990 2.3498 8 6 3.1272 -3.0446 2.2453 9 8 2.3984 -3.2879 1.3068 10 7 3.3367 -3.9775 3.1953 11 6 2.7265 -5.2014 3.1005 12 1 2.0743 -5.4166 2.2669 13 6 2.9420 -6.1630 4.0802 14 7 3.7352 -5.9010 5.0946 15 14 2.1045 -7.8280 3.9550 16 1 2.5206 -8.4981 2.6968 17 1 2.4964 -8.6676 5.1156 18 1 0.6312 -7.6420 3.9530 19 6 4.1837 2.5839 -0.0354 20 6 5.0061 2.6115 -1.3417 21 7 4.3598 1.5960 -2.2124 22 6 4.0183 0.4830 -1.2870 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6887 1.8464 -0.8901 28 1 3.7010 0.9461 2.1352 29 1 5.0922 0.3237 1.2156 30 1 3.4880 -1.2091 3.2730 31 1 4.8794 -1.8317 2.3541 32 1 3.9187 -3.7825 3.9465 33 1 3.8860 -6.5724 5.7783 34 1 3.4153 3.3568 -0.0554 35 1 4.8357 2.7214 0.8271 36 1 4.9530 3.5974 -1.8036 37 1 6.0427 2.3386 -1.1442 38 1 4.9914 1.2848 -2.9351 39 1 4.8999 -0.1240 -1.0814 40 1 3.2219 -0.1317 -1.7065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307778898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:59 Heat of formation + Delta-G solvation = -145.852820 kcal Electronic energy + Delta-G solvation = -21760.948373 eV Core-core repulsion = 18382.038078 eV Total energy + Delta-G solvation = -3378.910295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.70721 -40.01993 -38.01419 -37.83792 -35.91617 -33.32465 -33.06046 -30.20582 -29.33431 -27.88229 -26.60255 -25.88319 -25.35026 -22.41646 -21.30421 -20.18337 -19.92334 -18.09049 -17.55999 -17.13561 -17.09440 -16.90829 -16.69866 -16.47089 -16.10774 -15.61533 -15.29775 -14.97921 -14.66954 -14.45634 -13.80648 -13.54821 -13.46622 -13.18264 -12.94215 -12.90419 -12.66509 -12.51772 -12.43953 -12.14798 -12.11768 -12.00592 -11.72314 -11.51438 -11.39262 -10.47272 -10.36263 -10.26767 -10.02212 -9.54185 -8.46958 -5.95975 1.40098 1.41566 1.52810 2.03283 2.23079 2.54062 2.96957 3.19421 3.30527 3.53926 3.63673 3.92734 4.01001 4.16700 4.22378 4.29324 4.40345 4.41364 4.44712 4.46317 4.52417 4.53914 4.61179 4.65744 4.82320 4.84611 4.90355 4.99737 5.02553 5.15041 5.24830 5.40426 5.76064 5.94642 6.31861 6.39003 6.51389 6.63093 7.12444 7.53697 8.10937 8.70511 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.030854 B = 0.003901 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.285290 B = 7175.818273 C = 7563.459590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.387 6.387 3 C 0.077 3.923 4 C -0.058 4.058 5 C 0.066 3.934 6 O -0.360 6.360 7 C 0.064 3.936 8 C 0.438 3.562 9 O -0.616 6.616 10 N -0.570 5.570 11 C -0.336 4.336 12 H 0.077 0.923 13 C -0.011 4.011 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.272 1.272 17 H -0.268 1.268 18 H -0.272 1.272 19 C -0.105 4.105 20 C 0.035 3.965 21 N -0.676 5.676 22 C 0.058 3.942 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.398 0.602 33 H 0.279 0.721 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.343 0.657 39 H 0.035 0.965 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 19.042 -6.511 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.305 6.305 3 C 0.001 3.999 4 C -0.059 4.059 5 C -0.011 4.011 6 O -0.278 6.278 7 C -0.016 4.016 8 C 0.225 3.775 9 O -0.501 6.501 10 N -0.209 5.209 11 C -0.465 4.465 12 H 0.095 0.905 13 C -0.210 4.210 14 N -0.560 5.560 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.192 1.192 18 H -0.197 1.197 19 C -0.143 4.143 20 C -0.094 4.094 21 N -0.305 5.305 22 C -0.071 4.071 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.232 0.768 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.159 0.841 39 H 0.053 0.947 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.258 18.863 -7.185 20.311 hybrid contribution 0.663 -1.174 0.809 1.572 sum 2.921 17.689 -6.376 19.028 Atomic orbital electron populations 1.22692 0.81433 1.02016 1.00153 1.88221 1.19445 1.27689 1.95195 1.22542 0.92446 0.84888 1.00073 1.21414 0.94495 0.96155 0.93868 1.22807 0.96956 0.83618 0.97758 1.88239 1.70776 1.25210 1.43532 1.21960 0.98946 0.89444 0.91224 1.20645 0.85638 0.87228 0.83959 1.90521 1.42549 1.81565 1.35488 1.41795 1.43781 1.12440 1.22876 1.19622 1.26657 0.90869 1.09337 0.90490 1.26034 0.97454 1.03069 0.94490 1.69663 1.37169 1.37222 1.11994 0.84984 0.78422 0.76801 0.78087 1.19738 1.19210 1.19704 1.22342 0.99867 0.93441 0.98678 1.23007 0.96170 0.97344 0.92849 1.63745 1.44260 1.10634 1.11886 1.22719 0.99150 0.93045 0.92224 0.91614 0.93667 0.93009 0.92867 0.92718 0.91868 0.92191 0.89758 0.89765 0.76831 0.91191 0.89275 0.88730 0.88437 0.93142 0.84067 0.94714 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 11.01 113.37 1.25 2.25 16 2 O -0.39 -13.72 8.06 -128.10 -1.03 -14.76 16 3 C 0.08 2.02 4.60 71.98 0.33 2.35 16 4 C -0.06 -1.39 0.73 -51.29 -0.04 -1.42 16 5 C 0.07 1.71 4.51 71.98 0.32 2.03 16 6 O -0.36 -13.64 7.65 -120.06 -0.92 -14.56 16 7 C 0.06 2.43 6.42 71.24 0.46 2.88 16 8 C 0.44 22.55 7.86 87.66 0.69 23.24 16 9 O -0.62 -37.52 16.08 15.96 0.26 -37.26 16 10 N -0.57 -30.49 5.29 -306.98 -1.62 -32.11 16 11 C -0.34 -19.68 9.68 84.04 0.81 -18.87 16 12 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 13 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 14 N -0.92 -50.17 13.05 21.66 0.28 -49.88 16 15 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 C -0.11 -1.62 6.30 31.49 0.20 -1.42 16 20 C 0.04 0.52 7.47 86.45 0.65 1.17 16 21 N -0.68 -13.80 7.62 -500.45 -3.82 -17.62 16 22 C 0.06 1.55 6.26 86.42 0.54 2.09 16 23 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.40 19.85 7.90 -92.71 -0.73 19.12 16 33 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.09 1.19 7.71 -2.39 -0.02 1.17 16 35 H 0.09 1.12 7.71 -2.39 -0.02 1.10 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.34 6.02 8.92 -89.69 -0.80 5.22 16 39 H 0.03 0.96 7.85 -2.39 -0.02 0.95 16 40 H 0.06 2.05 7.37 -2.39 -0.02 2.03 16 Total: -1.00 -74.44 331.41 0.37 -74.08 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -0.49 Total: 32.24 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 5.68 Total: 14.18 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -5.16 Total: -99.61 kcal Atomic # 8 Polarization: -64.88 SS G_CDS: -1.69 Total: -66.58 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -74.44 0.37 -74.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307778898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.774 kcal (2) G-P(sol) polarization free energy of solvation -74.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds