Wall clock time and date at job start Mon Mar 30 2020 04:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99657 * 2 1 4 4 H 1.48494 * 109.47152 * 269.99813 * 3 2 1 5 5 H 1.48494 * 109.47304 * 30.00137 * 3 2 1 6 6 H 1.48505 * 109.46647 * 149.99782 * 3 2 1 7 7 C 1.37879 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00110 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99907 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00344 * 359.97438 * 11 10 9 13 13 C 1.50708 * 119.99669 * 179.97438 * 11 10 9 14 14 N 1.46900 * 109.46746 * 180.02562 * 13 11 10 15 15 C 1.46847 * 110.99954 * 293.94995 * 14 13 11 16 16 C 1.53036 * 109.52439 * 185.84196 * 15 14 13 17 17 C 1.53116 * 109.27959 * 300.82326 * 16 15 14 18 18 C 1.53120 * 109.16411 * 57.65078 * 17 16 15 19 19 O 1.42905 * 109.49949 * 62.28668 * 18 17 16 20 20 C 1.52994 * 109.50582 * 182.36635 * 18 17 16 21 21 O 1.42897 * 109.47423 * 304.92062 * 20 18 17 22 22 C 1.46926 * 110.99141 * 58.18024 * 14 13 11 23 23 H 0.97000 * 119.99885 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47383 * 59.99443 * 9 7 2 25 25 H 1.09003 * 109.46982 * 299.99932 * 9 7 2 26 26 H 0.97001 * 119.99623 * 359.97438 * 10 9 7 27 27 H 1.08996 * 109.47029 * 59.99561 * 13 11 10 28 28 H 1.08999 * 109.46805 * 299.99703 * 13 11 10 29 29 H 1.08996 * 109.46059 * 65.82482 * 15 14 13 30 30 H 1.09003 * 109.46492 * 305.85658 * 15 14 13 31 31 H 1.08996 * 109.50410 * 180.88364 * 16 15 14 32 32 H 1.09005 * 109.53731 * 60.78078 * 16 15 14 33 33 H 1.08999 * 109.52125 * 297.75128 * 17 16 15 34 34 H 1.08994 * 109.52524 * 177.56008 * 17 16 15 35 35 H 0.96696 * 114.00036 * 60.08154 * 19 18 17 36 36 H 1.09000 * 109.47444 * 64.92511 * 20 18 17 37 37 H 1.09005 * 109.47214 * 184.92315 * 20 18 17 38 38 H 0.96698 * 114.00564 * 179.97438 * 21 20 18 39 39 H 1.09005 * 109.51786 * 54.15428 * 22 14 13 40 40 H 1.08999 * 109.45247 * 294.16743 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0288 0.0022 14 7 1.9987 -7.3010 0.0010 15 6 1.2523 -7.4788 1.2531 16 6 0.6199 -8.8721 1.2781 17 6 -0.3178 -9.0233 0.0772 18 6 0.4738 -8.7857 -1.2118 19 8 1.4978 -9.7752 -1.3320 20 6 -0.4682 -8.8767 -2.4139 21 8 -1.1510 -10.1317 -2.3901 22 6 1.1104 -7.3948 -1.1655 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 3.1567 -3.4353 0.0021 27 1 3.3593 -5.9709 0.8925 28 1 3.3604 -5.9710 -0.8874 29 1 0.4694 -6.7234 1.3196 30 1 1.9316 -7.3730 2.0990 31 1 0.0531 -8.9980 2.2005 32 1 1.4029 -9.6288 1.2259 33 1 -1.1233 -8.2926 0.1498 34 1 -0.7372 -10.0293 0.0669 35 1 1.1657 -10.6828 -1.3658 36 1 -1.1956 -8.0663 -2.3677 37 1 0.1091 -8.7947 -3.3349 38 1 -1.7669 -10.2584 -3.1247 39 1 1.6861 -7.2284 -2.0760 40 1 0.3281 -6.6397 -1.0877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313665635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:07 Heat of formation + Delta-G solvation = -135.720883 kcal Electronic energy + Delta-G solvation = -21897.882216 eV Core-core repulsion = 18519.411275 eV Total energy + Delta-G solvation = -3378.470941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19366 -38.66193 -36.62143 -35.33626 -34.18108 -32.68145 -32.33672 -30.75418 -28.32502 -26.37585 -25.89581 -23.43567 -22.31367 -21.48979 -19.84768 -19.67431 -17.62457 -17.20418 -16.40580 -16.03123 -15.78748 -15.13258 -15.12476 -14.77682 -14.62831 -14.33854 -14.21447 -13.81576 -13.16318 -12.76008 -12.63481 -12.40839 -12.19792 -11.93972 -11.87699 -11.65566 -11.11348 -11.01659 -10.95385 -10.88314 -10.59739 -10.38122 -10.33637 -10.11736 -9.76045 -9.63836 -9.44237 -8.77466 -7.94358 -7.75154 -6.21000 -4.28208 3.21246 3.23906 3.27688 3.30043 3.73961 4.07862 4.26756 4.34523 4.36181 4.76840 4.84486 5.04587 5.15213 5.24105 5.26424 5.40276 5.46250 5.49762 5.58630 5.66943 5.70403 5.89245 5.96739 6.02332 6.10966 6.23602 6.29934 6.50545 7.08660 7.20041 7.25968 7.36688 7.38521 7.45406 7.61667 7.80220 7.92178 8.55532 8.71871 9.02088 9.38691 10.89094 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.034258 B = 0.003690 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.122222 B = 7586.036319 C = 7858.229348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.709 5.709 11 C 0.465 3.535 12 O -0.558 6.558 13 C 0.031 3.969 14 N -0.501 5.501 15 C 0.039 3.961 16 C -0.109 4.109 17 C -0.139 4.139 18 C 0.146 3.854 19 O -0.542 6.542 20 C 0.048 3.952 21 O -0.573 6.573 22 C 0.049 3.951 23 H 0.266 0.734 24 H 0.025 0.975 25 H 0.026 0.974 26 H 0.391 0.609 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.370 0.630 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.380 0.620 39 H 0.071 0.929 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -17.818 -2.355 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.357 5.357 11 C 0.250 3.750 12 O -0.439 6.439 13 C -0.101 4.101 14 N -0.223 5.223 15 C -0.088 4.088 16 C -0.147 4.147 17 C -0.177 4.177 18 C 0.105 3.895 19 O -0.346 6.346 20 C -0.031 4.031 21 O -0.379 6.379 22 C -0.079 4.079 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.224 0.776 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.216 0.784 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.227 0.773 39 H 0.090 0.910 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.822 -17.745 -1.825 17.932 hybrid contribution -0.454 1.443 -0.545 1.608 sum 1.368 -16.303 -2.370 16.531 Atomic orbital electron populations 1.69974 1.06142 1.27337 1.48897 1.24958 0.94912 0.99500 0.94625 0.86409 0.79649 0.82584 0.78253 1.20436 1.20983 1.19697 1.21235 0.93284 0.90481 1.53262 0.91876 1.19094 0.88382 0.82181 0.97588 1.46631 1.11200 1.06490 1.71369 1.21895 0.90336 0.85363 0.77435 1.90523 1.17226 1.84399 1.51734 1.22328 0.96343 0.86684 1.04719 1.62300 1.28336 1.29116 1.02554 1.22289 0.97759 0.97411 0.91389 1.21467 0.98560 0.97456 0.97177 1.22118 0.98302 1.02364 0.94892 1.21202 0.86579 0.89628 0.92141 1.86625 1.34052 1.17657 1.96276 1.22926 0.95243 0.85886 0.99016 1.86372 1.60944 1.37466 1.53088 1.22365 0.97798 0.93927 0.93769 0.92438 0.95659 0.95631 0.77595 0.88118 0.88153 0.91871 0.91398 0.91915 0.91046 0.91341 0.91188 0.78371 0.92538 0.92775 0.77270 0.91020 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.47 5.43 -5.20 -0.03 6.45 16 10 N -0.71 -14.45 5.55 -61.47 -0.34 -14.79 16 11 C 0.47 8.83 7.24 -10.98 -0.08 8.75 16 12 O -0.56 -12.34 11.62 5.56 0.06 -12.28 16 13 C 0.03 0.45 5.86 -4.97 -0.03 0.42 16 14 N -0.50 -7.51 4.74 -236.05 -1.12 -8.63 16 15 C 0.04 0.58 5.10 -3.83 -0.02 0.56 16 16 C -0.11 -1.39 5.94 -26.65 -0.16 -1.55 16 17 C -0.14 -1.77 4.75 -26.61 -0.13 -1.90 16 18 C 0.15 1.90 0.82 -90.54 -0.07 1.82 16 19 O -0.54 -7.11 12.31 -40.02 -0.49 -7.60 16 20 C 0.05 0.53 6.20 37.15 0.23 0.76 16 21 O -0.57 -5.53 12.50 -40.02 -0.50 -6.03 16 22 C 0.05 0.74 3.95 -3.79 -0.01 0.73 16 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 27 H 0.10 1.26 8.06 -51.93 -0.42 0.84 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.11 6.00 -51.93 -0.31 0.80 16 30 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.91 7.80 -51.93 -0.40 0.51 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.83 7.65 -51.93 -0.40 0.44 16 35 H 0.37 3.85 8.73 45.56 0.40 4.25 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.38 2.02 9.12 45.56 0.42 2.44 16 39 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 40 H 0.09 1.66 5.36 -51.93 -0.28 1.38 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -32.55 321.02 -7.22 -39.77 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -4.67 Total: 11.47 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.72 Total: 2.76 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.72 Total: -48.60 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.93 Total: -25.91 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.55 -7.22 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313665635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.952 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds