Wall clock time and date at job start Mon Mar 30 2020 04:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99657 * 2 1 4 4 H 1.48494 * 109.47152 * 269.99813 * 3 2 1 5 5 H 1.48494 * 109.47304 * 30.00137 * 3 2 1 6 6 H 1.48505 * 109.46647 * 149.99782 * 3 2 1 7 7 C 1.37879 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00110 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99907 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00344 * 359.97438 * 11 10 9 13 13 C 1.50708 * 119.99669 * 179.97438 * 11 10 9 14 14 N 1.46900 * 109.46746 * 180.02562 * 13 11 10 15 15 C 1.46847 * 110.99954 * 293.94995 * 14 13 11 16 16 C 1.53036 * 109.52439 * 185.84196 * 15 14 13 17 17 C 1.53116 * 109.27959 * 300.82326 * 16 15 14 18 18 C 1.53120 * 109.16411 * 57.65078 * 17 16 15 19 19 O 1.42905 * 109.49949 * 62.28668 * 18 17 16 20 20 C 1.52994 * 109.50582 * 182.36635 * 18 17 16 21 21 O 1.42897 * 109.47423 * 304.92062 * 20 18 17 22 22 C 1.46926 * 110.99141 * 58.18024 * 14 13 11 23 23 H 0.97000 * 119.99885 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47383 * 59.99443 * 9 7 2 25 25 H 1.09003 * 109.46982 * 299.99932 * 9 7 2 26 26 H 0.97001 * 119.99623 * 359.97438 * 10 9 7 27 27 H 1.08996 * 109.47029 * 59.99561 * 13 11 10 28 28 H 1.08999 * 109.46805 * 299.99703 * 13 11 10 29 29 H 1.08996 * 109.46059 * 65.82482 * 15 14 13 30 30 H 1.09003 * 109.46492 * 305.85658 * 15 14 13 31 31 H 1.08996 * 109.50410 * 180.88364 * 16 15 14 32 32 H 1.09005 * 109.53731 * 60.78078 * 16 15 14 33 33 H 1.08999 * 109.52125 * 297.75128 * 17 16 15 34 34 H 1.08994 * 109.52524 * 177.56008 * 17 16 15 35 35 H 0.96696 * 114.00036 * 60.08154 * 19 18 17 36 36 H 1.09000 * 109.47444 * 64.92511 * 20 18 17 37 37 H 1.09005 * 109.47214 * 184.92315 * 20 18 17 38 38 H 0.96698 * 114.00564 * 179.97438 * 21 20 18 39 39 H 1.09005 * 109.51786 * 54.15428 * 22 14 13 40 40 H 1.08999 * 109.45247 * 294.16743 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0288 0.0022 14 7 1.9987 -7.3010 0.0010 15 6 1.2523 -7.4788 1.2531 16 6 0.6199 -8.8721 1.2781 17 6 -0.3178 -9.0233 0.0772 18 6 0.4738 -8.7857 -1.2118 19 8 1.4978 -9.7752 -1.3320 20 6 -0.4682 -8.8767 -2.4139 21 8 -1.1510 -10.1317 -2.3901 22 6 1.1104 -7.3948 -1.1655 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 3.1567 -3.4353 0.0021 27 1 3.3593 -5.9709 0.8925 28 1 3.3604 -5.9710 -0.8874 29 1 0.4694 -6.7234 1.3196 30 1 1.9316 -7.3730 2.0990 31 1 0.0531 -8.9980 2.2005 32 1 1.4029 -9.6288 1.2259 33 1 -1.1233 -8.2926 0.1498 34 1 -0.7372 -10.0293 0.0669 35 1 1.1657 -10.6828 -1.3658 36 1 -1.1956 -8.0663 -2.3677 37 1 0.1091 -8.7947 -3.3349 38 1 -1.7669 -10.2584 -3.1247 39 1 1.6861 -7.2284 -2.0760 40 1 0.3281 -6.6397 -1.0877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313665635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:07 Heat of formation + Delta-G solvation = -165.808255 kcal Electronic energy + Delta-G solvation = -21899.186902 eV Core-core repulsion = 18519.411275 eV Total energy + Delta-G solvation = -3379.775628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48417 -39.95925 -37.66426 -36.43837 -35.94943 -34.39517 -33.72928 -31.80200 -30.03291 -27.97168 -26.89053 -25.01922 -23.84282 -22.65509 -21.40720 -20.86692 -18.98877 -18.40858 -17.64490 -17.40636 -17.29891 -16.73532 -16.48028 -16.03934 -15.78284 -15.61527 -15.52098 -15.28101 -14.42885 -14.21916 -14.11554 -13.77036 -13.67553 -13.37105 -13.06255 -12.90252 -12.82494 -12.72537 -12.25485 -12.23931 -12.01577 -11.74215 -11.50570 -11.33568 -11.30684 -11.00787 -10.81312 -10.63437 -9.81192 -9.11863 -8.31070 -6.47903 1.42040 1.44022 1.55378 1.70615 2.31448 2.60844 2.72357 3.03788 3.27151 3.39390 3.77159 3.82431 3.97311 4.06224 4.20178 4.28175 4.39250 4.43138 4.54822 4.58176 4.60281 4.85736 4.86300 4.90986 5.01561 5.02622 5.10178 5.22030 5.24333 5.40269 5.49347 5.69227 5.83180 5.92595 6.01602 6.63624 6.77968 6.88967 6.93391 7.21843 7.47542 8.80716 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.034258 B = 0.003690 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.122222 B = 7586.036319 C = 7858.229348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.267 3.733 10 N -0.706 5.706 11 C 0.463 3.537 12 O -0.591 6.591 13 C 0.041 3.959 14 N -0.496 5.496 15 C 0.038 3.962 16 C -0.104 4.104 17 C -0.136 4.136 18 C 0.147 3.853 19 O -0.549 6.549 20 C 0.055 3.945 21 O -0.578 6.578 22 C 0.049 3.951 23 H 0.268 0.732 24 H -0.014 1.014 25 H -0.015 1.015 26 H 0.408 0.592 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.383 0.617 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.400 0.600 39 H 0.074 0.926 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 -18.651 -2.474 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.144 3.856 10 N -0.356 5.356 11 C 0.250 3.750 12 O -0.474 6.474 13 C -0.090 4.090 14 N -0.218 5.218 15 C -0.090 4.090 16 C -0.141 4.141 17 C -0.174 4.174 18 C 0.106 3.894 19 O -0.356 6.356 20 C -0.024 4.024 21 O -0.387 6.387 22 C -0.079 4.079 23 H 0.077 0.923 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.244 0.756 27 H 0.148 0.852 28 H 0.144 0.856 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.231 0.769 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.250 0.750 39 H 0.092 0.908 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.040 -18.633 -1.957 19.166 hybrid contribution -1.202 1.593 -0.520 2.062 sum 2.838 -17.040 -2.477 17.451 Atomic orbital electron populations 1.70136 1.08285 1.28536 1.50066 1.26058 0.95749 1.03901 0.93830 0.85172 0.78532 0.77013 0.78613 1.19594 1.21000 1.17889 1.21642 0.94323 0.90684 1.52799 0.89841 1.18491 0.88735 0.84544 0.93822 1.46383 1.11194 1.05826 1.72207 1.22900 0.90753 0.85722 0.75658 1.90538 1.19366 1.84877 1.52636 1.22506 0.95258 0.83986 1.07290 1.62410 1.28145 1.28650 1.02579 1.22315 0.97181 0.97675 0.91798 1.21451 0.98717 0.96183 0.97792 1.22080 0.97830 1.02422 0.95019 1.21067 0.86704 0.88578 0.93053 1.86574 1.34202 1.18493 1.96323 1.22726 0.94950 0.86345 0.98392 1.86318 1.61461 1.36405 1.54481 1.22281 0.96991 0.94724 0.93928 0.92285 0.99650 0.99722 0.75587 0.85249 0.85580 0.95295 0.90030 0.90649 0.90359 0.93142 0.89941 0.76871 0.93322 0.92072 0.74969 0.90794 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.98 42.08 29.54 68.60 2.03 44.10 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.56 -30.08 9.28 25.60 0.24 -29.85 16 8 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 9 C 0.27 14.52 5.43 85.63 0.46 14.99 16 10 N -0.71 -29.04 5.55 -466.80 -2.59 -31.63 16 11 C 0.46 17.74 7.24 87.66 0.64 18.37 16 12 O -0.59 -27.45 11.62 -3.01 -0.04 -27.49 16 13 C 0.04 1.12 5.86 85.56 0.50 1.62 16 14 N -0.50 -14.25 4.74 -900.71 -4.27 -18.52 16 15 C 0.04 1.10 5.10 86.33 0.44 1.54 16 16 C -0.10 -2.51 5.94 30.64 0.18 -2.33 16 17 C -0.14 -3.37 4.75 30.67 0.15 -3.22 16 18 C 0.15 3.70 0.82 -10.74 -0.01 3.69 16 19 O -0.55 -13.27 12.31 -144.40 -1.78 -15.05 16 20 C 0.05 1.16 6.20 71.98 0.45 1.61 16 21 O -0.58 -10.14 12.50 -144.40 -1.81 -11.94 16 22 C 0.05 1.47 3.95 86.31 0.34 1.81 16 23 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 24 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 25 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H 0.41 13.80 8.32 -92.71 -0.77 13.02 16 27 H 0.13 2.83 8.06 -2.39 -0.02 2.81 16 28 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.03 1.05 6.00 -2.39 -0.01 1.03 16 30 H 0.08 2.10 8.06 -2.39 -0.02 2.08 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.82 7.80 -2.38 -0.02 1.80 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.83 7.65 -2.39 -0.02 1.81 16 35 H 0.38 7.04 8.73 -74.06 -0.65 6.39 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.40 3.49 9.12 -74.06 -0.68 2.81 16 39 H 0.07 2.14 8.12 -2.38 -0.02 2.12 16 40 H 0.06 2.33 5.36 -2.39 -0.01 2.31 16 Total: -1.00 -72.54 321.02 -5.34 -77.88 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -1.02 Total: 29.50 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 3.85 Total: 8.91 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -6.57 Total: -105.92 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -3.62 Total: -54.48 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -72.54 -5.34 -77.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313665635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.924 kcal (2) G-P(sol) polarization free energy of solvation -72.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds