Wall clock time and date at job start Mon Mar 30 2020 05:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99540 * 2 1 4 4 C 1.50697 * 109.47563 * 270.00025 * 3 2 1 5 5 H 1.07995 * 120.00035 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00245 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99821 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00123 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47176 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47138 * 119.99731 * 8 6 4 11 11 H 1.48499 * 109.47226 * 239.99640 * 8 6 4 12 12 C 1.34773 * 120.00226 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99595 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00148 * 359.97438 * 12 2 1 15 15 N 1.46901 * 109.46950 * 180.02562 * 14 12 2 16 16 C 1.47437 * 111.00223 * 49.15830 * 15 14 12 17 17 C 1.54320 * 107.23257 * 123.25511 * 16 15 14 18 18 H 1.09005 * 110.70961 * 263.90379 * 17 16 15 19 19 O 1.42902 * 110.70671 * 140.84165 * 17 16 15 20 20 C 1.55138 * 103.02210 * 22.28526 * 17 16 15 21 21 H 1.09001 * 110.98913 * 82.43214 * 20 17 16 22 22 C 1.52999 * 110.99653 * 206.25748 * 20 17 16 23 23 O 1.42898 * 109.47151 * 178.72119 * 22 20 17 24 24 C 1.47846 * 110.99547 * 170.00233 * 15 14 12 25 25 H 1.08999 * 109.47456 * 269.99297 * 1 2 3 26 26 H 1.08998 * 109.47929 * 29.99840 * 1 2 3 27 27 H 1.09008 * 109.46889 * 149.99475 * 1 2 3 28 28 H 1.09004 * 109.47594 * 30.00878 * 3 2 1 29 29 H 1.09010 * 109.47084 * 150.00163 * 3 2 1 30 30 H 0.97003 * 120.00025 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46833 * 60.00895 * 14 12 2 32 32 H 1.09001 * 109.47358 * 300.00326 * 14 12 2 33 33 H 1.08998 * 109.89349 * 242.66131 * 16 15 14 34 34 H 1.08998 * 109.88725 * 3.69037 * 16 15 14 35 35 H 0.96709 * 113.99803 * 61.45517 * 19 17 16 36 36 H 1.09006 * 109.46252 * 298.71975 * 22 20 17 37 37 H 1.08997 * 109.47142 * 58.71291 * 22 20 17 38 38 H 0.96701 * 113.99538 * 180.02562 * 23 22 20 39 39 H 1.08995 * 110.38030 * 332.46412 * 24 15 14 40 40 H 1.09000 * 110.37255 * 94.81067 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4207 5 1 2.0974 1.0964 -2.2417 6 6 3.1267 2.8777 -1.6726 7 7 3.5539 3.6178 -0.6730 8 14 3.4374 3.4174 -3.4337 9 1 2.8596 2.4174 -4.3672 10 1 2.8002 4.7385 -3.6663 11 1 4.8999 3.5252 -3.6677 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1670 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 7 2.3402 -3.5887 -0.0005 16 6 3.3677 -3.4053 1.0408 17 6 3.3241 -4.6511 1.9506 18 1 2.7101 -4.4637 2.8315 19 8 4.6439 -5.0452 2.3313 20 6 2.6675 -5.7242 1.0427 21 1 3.4045 -6.1801 0.3815 22 6 1.9528 -6.7872 1.8793 23 8 1.3360 -7.7407 1.0119 24 6 1.6513 -4.8748 0.2391 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3635 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5140 28 1 1.6083 2.0284 0.5140 29 1 3.1499 1.1385 0.5139 30 1 4.0307 4.4437 -0.8502 31 1 0.7586 -2.5299 -0.8904 32 1 0.7591 -2.5303 0.8897 33 1 4.3514 -3.3172 0.5797 34 1 3.1498 -2.5101 1.6231 35 1 5.1238 -4.3754 2.8375 36 1 2.6762 -7.2927 2.5192 37 1 1.1911 -6.3118 2.4971 38 1 0.8630 -8.4455 1.4751 39 1 0.7441 -4.7166 0.8222 40 1 1.4152 -5.3609 -0.7075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316239890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:44 Heat of formation + Delta-G solvation = -115.465949 kcal Electronic energy + Delta-G solvation = -21683.143298 eV Core-core repulsion = 18305.550676 eV Total energy + Delta-G solvation = -3377.592622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06468 -38.55888 -36.79161 -35.86274 -34.77779 -32.67209 -31.94442 -28.91480 -28.11763 -26.85770 -25.66601 -24.33088 -22.60002 -21.16240 -20.60325 -18.35290 -17.77281 -17.25151 -16.68071 -16.45504 -15.79125 -15.60123 -15.15948 -15.05536 -14.33148 -14.26422 -13.69278 -13.40967 -13.28141 -13.07984 -12.47725 -12.26442 -12.22387 -12.12754 -11.87452 -11.82425 -11.32705 -11.27328 -11.17770 -10.85656 -10.59816 -10.55846 -10.26172 -10.18794 -10.10789 -9.59679 -8.82526 -8.44203 -8.18346 -7.65603 -6.04911 -4.09383 3.30477 3.35095 3.38911 3.44584 3.68789 3.75461 4.00495 4.32415 4.45242 4.48992 4.74588 4.84276 5.04485 5.13081 5.17710 5.26633 5.30473 5.33325 5.36590 5.48519 5.57308 5.68093 5.75551 5.88430 5.95629 6.08728 6.17745 6.35516 6.90292 7.01646 7.12019 7.34145 7.41032 7.51927 7.52597 7.91850 8.22637 8.38266 8.89866 9.07466 9.55990 11.03232 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.003900 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.885810 B = 7178.389221 C = 7430.642544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.603 5.603 3 C 0.246 3.754 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.502 3.498 13 O -0.526 6.526 14 C 0.031 3.969 15 N -0.510 5.510 16 C 0.030 3.970 17 C 0.082 3.918 18 H 0.060 0.940 19 O -0.560 6.560 20 C -0.089 4.089 21 H 0.101 0.899 22 C 0.088 3.912 23 O -0.570 6.570 24 C 0.055 3.945 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.382 0.618 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.378 0.622 39 H 0.047 0.953 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 -17.647 7.816 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.336 5.336 3 C 0.127 3.873 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.287 3.713 13 O -0.403 6.403 14 C -0.100 4.100 15 N -0.235 5.235 16 C -0.098 4.098 17 C 0.022 3.978 18 H 0.078 0.922 19 O -0.365 6.365 20 C -0.108 4.108 21 H 0.119 0.881 22 C 0.010 3.990 23 O -0.376 6.376 24 C -0.072 4.072 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.230 0.770 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.225 0.775 39 H 0.065 0.935 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.509 -17.590 6.596 19.882 hybrid contribution -0.479 0.742 0.544 1.037 sum -6.988 -16.848 7.140 19.587 Atomic orbital electron populations 1.21644 0.81495 1.02694 1.00305 1.48168 1.06157 1.07792 1.71500 1.19285 0.92467 0.77964 0.97579 1.21476 1.36358 1.06230 0.92323 0.92363 1.24941 0.95330 0.96389 0.97501 1.69941 1.38511 1.14358 1.30694 0.86429 0.78115 0.78257 0.84556 1.19752 1.20987 1.20849 1.20145 0.88271 0.84890 0.77951 1.90682 1.13603 1.86745 1.49288 1.22321 0.94826 0.90562 1.02322 1.63389 1.12243 1.00789 1.47070 1.23544 0.98516 0.95772 0.91921 1.23169 0.84172 0.94473 0.96002 0.92171 1.86466 1.27374 1.45874 1.76796 1.22244 0.97513 0.94093 0.96964 0.88099 1.22105 0.95344 0.89874 0.91658 1.86499 1.73037 1.41015 1.37011 1.23071 0.94923 0.89075 1.00167 0.93845 0.90627 0.92494 0.95046 0.93900 0.92785 0.88121 0.92673 0.88665 0.91501 0.76969 0.93001 0.93756 0.77495 0.93453 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.24 59.85 0.61 1.89 16 2 N -0.60 -12.69 2.86 -182.95 -0.52 -13.21 16 3 C 0.25 6.43 5.16 -5.20 -0.03 6.40 16 4 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.50 10.36 6.94 -10.99 -0.08 10.28 16 13 O -0.53 -12.98 13.38 5.55 0.07 -12.91 16 14 C 0.03 0.47 4.11 -4.98 -0.02 0.45 16 15 N -0.51 -7.93 5.21 -232.69 -1.21 -9.14 16 16 C 0.03 0.47 4.80 -2.84 -0.01 0.46 16 17 C 0.08 0.99 3.78 -24.91 -0.09 0.90 16 18 H 0.06 0.63 8.04 -51.93 -0.42 0.22 16 19 O -0.56 -6.71 13.40 -35.23 -0.47 -7.18 16 20 C -0.09 -1.06 3.05 -88.48 -0.27 -1.33 16 21 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 22 C 0.09 0.82 6.49 37.16 0.24 1.06 16 23 O -0.57 -5.27 13.51 -35.23 -0.48 -5.74 16 24 C 0.06 0.68 6.05 -2.29 -0.01 0.66 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 27 H 0.06 0.72 6.44 -51.92 -0.33 0.38 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.26 7.42 -51.92 -0.39 0.87 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.10 1.41 7.40 -51.93 -0.38 1.03 16 32 H 0.06 0.71 7.79 -51.93 -0.40 0.30 16 33 H 0.10 1.71 7.87 -51.93 -0.41 1.30 16 34 H 0.07 1.12 6.11 -51.93 -0.32 0.80 16 35 H 0.38 3.21 9.11 45.56 0.42 3.63 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.04 0.35 8.10 -51.93 -0.42 -0.07 16 38 H 0.38 1.65 9.12 45.56 0.42 2.07 16 39 H 0.05 0.51 7.47 -51.93 -0.39 0.12 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -35.50 327.68 -6.74 -42.24 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.70 Total: 2.81 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -0.08 Total: 7.09 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -1.00 Total: -48.32 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.87 Total: -25.83 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.50 -6.74 -42.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316239890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.223 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds