Wall clock time and date at job start Mon Mar 30 2020 05:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99540 * 2 1 4 4 C 1.50697 * 109.47563 * 270.00025 * 3 2 1 5 5 H 1.07995 * 120.00035 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00245 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99821 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00123 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47176 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47138 * 119.99731 * 8 6 4 11 11 H 1.48499 * 109.47226 * 239.99640 * 8 6 4 12 12 C 1.34773 * 120.00226 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99595 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00148 * 359.97438 * 12 2 1 15 15 N 1.46901 * 109.46950 * 180.02562 * 14 12 2 16 16 C 1.47437 * 111.00223 * 49.15830 * 15 14 12 17 17 C 1.54320 * 107.23257 * 123.25511 * 16 15 14 18 18 H 1.09005 * 110.70961 * 263.90379 * 17 16 15 19 19 O 1.42902 * 110.70671 * 140.84165 * 17 16 15 20 20 C 1.55138 * 103.02210 * 22.28526 * 17 16 15 21 21 H 1.09001 * 110.98913 * 82.43214 * 20 17 16 22 22 C 1.52999 * 110.99653 * 206.25748 * 20 17 16 23 23 O 1.42898 * 109.47151 * 178.72119 * 22 20 17 24 24 C 1.47846 * 110.99547 * 170.00233 * 15 14 12 25 25 H 1.08999 * 109.47456 * 269.99297 * 1 2 3 26 26 H 1.08998 * 109.47929 * 29.99840 * 1 2 3 27 27 H 1.09008 * 109.46889 * 149.99475 * 1 2 3 28 28 H 1.09004 * 109.47594 * 30.00878 * 3 2 1 29 29 H 1.09010 * 109.47084 * 150.00163 * 3 2 1 30 30 H 0.97003 * 120.00025 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46833 * 60.00895 * 14 12 2 32 32 H 1.09001 * 109.47358 * 300.00326 * 14 12 2 33 33 H 1.08998 * 109.89349 * 242.66131 * 16 15 14 34 34 H 1.08998 * 109.88725 * 3.69037 * 16 15 14 35 35 H 0.96709 * 113.99803 * 61.45517 * 19 17 16 36 36 H 1.09006 * 109.46252 * 298.71975 * 22 20 17 37 37 H 1.08997 * 109.47142 * 58.71291 * 22 20 17 38 38 H 0.96701 * 113.99538 * 180.02562 * 23 22 20 39 39 H 1.08995 * 110.38030 * 332.46412 * 24 15 14 40 40 H 1.09000 * 110.37255 * 94.81067 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4207 5 1 2.0974 1.0964 -2.2417 6 6 3.1267 2.8777 -1.6726 7 7 3.5539 3.6178 -0.6730 8 14 3.4374 3.4174 -3.4337 9 1 2.8596 2.4174 -4.3672 10 1 2.8002 4.7385 -3.6663 11 1 4.8999 3.5252 -3.6677 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1670 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 7 2.3402 -3.5887 -0.0005 16 6 3.3677 -3.4053 1.0408 17 6 3.3241 -4.6511 1.9506 18 1 2.7101 -4.4637 2.8315 19 8 4.6439 -5.0452 2.3313 20 6 2.6675 -5.7242 1.0427 21 1 3.4045 -6.1801 0.3815 22 6 1.9528 -6.7872 1.8793 23 8 1.3360 -7.7407 1.0119 24 6 1.6513 -4.8748 0.2391 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3635 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5140 28 1 1.6083 2.0284 0.5140 29 1 3.1499 1.1385 0.5139 30 1 4.0307 4.4437 -0.8502 31 1 0.7586 -2.5299 -0.8904 32 1 0.7591 -2.5303 0.8897 33 1 4.3514 -3.3172 0.5797 34 1 3.1498 -2.5101 1.6231 35 1 5.1238 -4.3754 2.8375 36 1 2.6762 -7.2927 2.5192 37 1 1.1911 -6.3118 2.4971 38 1 0.8630 -8.4455 1.4751 39 1 0.7441 -4.7166 0.8222 40 1 1.4152 -5.3609 -0.7075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316239890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:44 Heat of formation + Delta-G solvation = -148.180467 kcal Electronic energy + Delta-G solvation = -21684.561906 eV Core-core repulsion = 18305.550676 eV Total energy + Delta-G solvation = -3379.011229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33324 -39.88828 -37.52282 -36.98831 -36.43036 -34.75318 -33.01674 -30.38902 -29.53009 -28.11816 -27.18319 -25.52061 -24.30369 -22.36985 -21.52528 -19.90430 -18.73103 -18.58454 -18.05728 -17.94279 -17.09865 -17.04189 -16.54069 -16.24290 -16.04035 -15.32763 -14.81045 -14.66644 -14.36596 -14.29447 -14.00038 -13.86972 -13.50808 -13.45050 -13.24613 -13.10746 -12.99263 -12.78038 -12.56211 -12.31794 -12.22751 -12.06678 -11.69609 -11.54476 -11.17519 -10.86608 -10.66192 -10.46521 -9.41314 -9.30109 -8.24056 -6.38576 1.35015 1.37901 1.49565 1.80729 2.24902 2.40089 2.87708 2.99597 3.05525 3.37089 3.46386 3.79258 3.93098 4.00667 4.19375 4.23844 4.30824 4.32430 4.46142 4.47666 4.56819 4.60109 4.72305 4.81843 4.95123 4.96487 5.00137 5.10215 5.19013 5.21231 5.54996 5.80157 5.86232 5.98596 6.05233 6.69292 6.73195 6.78263 6.94786 7.27378 7.48046 8.82975 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.003900 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.885810 B = 7178.389221 C = 7430.642544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.261 3.739 4 C -0.542 4.542 5 H 0.051 0.949 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.268 1.268 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.491 3.509 13 O -0.580 6.580 14 C 0.046 3.954 15 N -0.537 5.537 16 C 0.037 3.963 17 C 0.093 3.907 18 H 0.087 0.913 19 O -0.572 6.572 20 C -0.090 4.090 21 H 0.074 0.926 22 C 0.096 3.904 23 O -0.589 6.589 24 C 0.060 3.940 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.024 0.976 29 H -0.003 1.003 30 H 0.267 0.733 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.396 0.604 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.400 0.600 39 H 0.075 0.925 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 -19.133 7.827 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.343 5.343 3 C 0.140 3.860 4 C -0.581 4.581 5 H 0.069 0.931 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.192 1.192 11 H -0.208 1.208 12 C 0.279 3.721 13 O -0.460 6.460 14 C -0.084 4.084 15 N -0.263 5.263 16 C -0.091 4.091 17 C 0.033 3.967 18 H 0.105 0.895 19 O -0.380 6.380 20 C -0.109 4.109 21 H 0.092 0.908 22 C 0.018 3.982 23 O -0.397 6.397 24 C -0.066 4.066 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.042 0.958 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.246 0.754 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.250 0.750 39 H 0.093 0.907 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.932 -19.105 6.626 22.106 hybrid contribution 0.274 1.184 0.566 1.341 sum -8.658 -17.920 7.192 21.162 Atomic orbital electron populations 1.21957 0.77785 1.04093 1.02675 1.48188 1.08467 1.06260 1.71407 1.18727 0.91074 0.80351 0.95880 1.21740 1.36714 1.06478 0.93148 0.93065 1.25848 0.94910 0.96456 1.01942 1.70049 1.39007 1.14836 1.32913 0.85373 0.77860 0.78415 0.79189 1.19281 1.19219 1.20829 1.21185 0.88061 0.86430 0.76421 1.90661 1.16253 1.87669 1.51448 1.22257 0.94219 0.87007 1.04922 1.63289 1.13045 1.02167 1.47795 1.23308 0.96815 0.96904 0.92083 1.23104 0.84633 0.92777 0.96181 0.89482 1.86434 1.27771 1.46669 1.77116 1.22229 0.97169 0.94704 0.96838 0.90775 1.21994 0.95887 0.89353 0.90988 1.86442 1.73410 1.41884 1.38001 1.23096 0.95629 0.87211 1.00689 0.90901 0.91560 0.88796 0.95763 0.98449 0.92392 0.86025 0.88927 0.92673 0.93360 0.75405 0.92673 0.91426 0.75018 0.90700 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.19 10.24 127.77 1.31 3.50 16 2 N -0.61 -25.68 2.86 -851.13 -2.43 -28.11 16 3 C 0.26 14.15 5.16 85.63 0.44 14.59 16 4 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.43 5.46 84.66 0.46 0.89 16 7 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 8 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 C 0.49 20.34 6.94 87.66 0.61 20.95 16 13 O -0.58 -30.03 13.38 -3.04 -0.04 -30.07 16 14 C 0.05 1.31 4.11 85.56 0.35 1.66 16 15 N -0.54 -16.13 5.21 -890.10 -4.64 -20.76 16 16 C 0.04 1.17 4.80 86.65 0.42 1.59 16 17 C 0.09 2.13 3.78 31.78 0.12 2.25 16 18 H 0.09 1.57 8.04 -2.38 -0.02 1.55 16 19 O -0.57 -13.45 13.40 -148.98 -2.00 -15.44 16 20 C -0.09 -1.98 3.05 -9.41 -0.03 -2.01 16 21 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 22 C 0.10 1.47 6.49 71.98 0.47 1.94 16 23 O -0.59 -9.13 13.51 -148.98 -2.01 -11.14 16 24 C 0.06 1.33 6.05 86.78 0.53 1.85 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 27 H 0.09 1.98 6.44 -2.38 -0.02 1.97 16 28 H 0.02 1.33 8.07 -2.38 -0.02 1.31 16 29 H 0.00 -0.16 7.42 -2.38 -0.02 -0.18 16 30 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.12 2.95 7.40 -2.39 -0.02 2.94 16 32 H 0.09 1.96 7.79 -2.39 -0.02 1.94 16 33 H 0.05 2.13 7.87 -2.39 -0.02 2.11 16 34 H 0.05 1.66 6.11 -2.39 -0.01 1.65 16 35 H 0.40 6.62 9.11 -74.05 -0.67 5.95 16 36 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.07 0.75 8.10 -2.39 -0.02 0.73 16 38 H 0.40 2.20 9.12 -74.06 -0.68 1.53 16 39 H 0.07 1.26 7.47 -2.39 -0.02 1.24 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -81.02 327.68 -4.19 -85.22 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -0.30 Total: 13.16 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 4.91 Total: 15.74 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -6.78 Total: -105.15 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -4.05 Total: -56.66 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -81.02 -4.19 -85.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316239890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.965 kcal (2) G-P(sol) polarization free energy of solvation -81.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds