Wall clock time and date at job start Mon Mar 30 2020 05:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00256 * 2 1 4 4 H 1.48496 * 109.47188 * 270.00193 * 3 2 1 5 5 H 1.48495 * 109.46984 * 30.00197 * 3 2 1 6 6 H 1.48505 * 109.46908 * 149.99888 * 3 2 1 7 7 C 1.37882 * 119.99286 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99531 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00330 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99693 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46873 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46899 * 65.00475 * 12 11 10 14 14 C 1.46898 * 110.99673 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47006 * 179.97438 * 14 13 12 16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 13 17 17 C 1.46846 * 111.00018 * 294.20961 * 16 15 14 18 18 C 1.53033 * 109.52460 * 174.16134 * 17 16 15 19 19 C 1.53124 * 109.27811 * 59.18358 * 18 17 16 20 20 O 1.42899 * 109.52483 * 182.44119 * 19 18 17 21 21 C 1.53125 * 109.15751 * 302.34732 * 19 18 17 22 22 C 1.46851 * 110.99682 * 170.00115 * 16 15 14 23 23 H 0.97007 * 119.99707 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47363 * 59.99737 * 9 7 2 25 25 H 1.09005 * 109.46694 * 299.99874 * 9 7 2 26 26 H 1.08999 * 109.47110 * 60.00077 * 11 10 9 27 27 H 1.09001 * 109.47005 * 300.00216 * 11 10 9 28 28 H 1.08993 * 109.47042 * 305.00414 * 12 11 10 29 29 H 1.08995 * 109.46589 * 184.99655 * 12 11 10 30 30 H 1.00906 * 110.99345 * 303.95072 * 13 12 11 31 31 H 1.09001 * 109.47062 * 59.99745 * 14 13 12 32 32 H 1.08993 * 109.47084 * 299.99192 * 14 13 12 33 33 H 1.09001 * 109.46801 * 300.00064 * 15 14 13 34 34 H 1.09001 * 109.46998 * 59.99660 * 15 14 13 35 35 H 1.09002 * 109.46555 * 294.18280 * 17 16 15 36 36 H 1.09001 * 109.46296 * 54.14881 * 17 16 15 37 37 H 1.08997 * 109.50475 * 299.23909 * 18 17 16 38 38 H 1.09002 * 109.50799 * 179.12007 * 18 17 16 39 39 H 1.08998 * 109.57589 * 62.27874 * 19 18 17 40 40 H 0.96693 * 113.99955 * 299.68250 * 20 19 18 41 41 H 1.09005 * 109.50073 * 297.71107 * 21 19 18 42 42 H 1.08991 * 109.50379 * 177.59621 * 21 19 18 43 43 H 1.08989 * 109.46428 * 305.85572 * 22 16 15 44 44 H 1.09002 * 109.45912 * 65.83533 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0017 10 8 2.1794 -3.5854 -0.0027 11 6 1.5648 -4.8755 -0.0032 12 6 2.6477 -5.9564 -0.0049 13 7 3.4086 -5.8890 1.2499 14 6 4.4593 -6.9151 1.2841 15 6 5.2288 -6.8133 2.6026 16 7 6.2799 -7.8390 2.6365 17 6 5.6987 -9.1872 2.6682 18 6 6.8150 -10.2280 2.5561 19 6 7.7940 -10.0466 3.7194 20 8 8.8691 -10.9788 3.5886 21 6 8.3481 -8.6194 3.6920 22 6 7.1874 -7.6251 3.7711 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5563 -0.8919 25 1 0.6238 -2.5574 0.8881 26 1 0.9443 -4.9820 -0.8931 27 1 0.9449 -4.9830 0.8869 28 1 3.3206 -5.7951 -0.8470 29 1 2.1815 -6.9375 -0.0948 30 1 3.7973 -4.9681 1.3880 31 1 5.1449 -6.7609 0.4508 32 1 4.0054 -7.9027 1.2033 33 1 5.6827 -5.8256 2.6830 34 1 4.5434 -6.9671 3.4361 35 1 5.1622 -9.3295 3.6063 36 1 5.0077 -9.3045 1.8334 37 1 7.3430 -10.0951 1.6119 38 1 6.3848 -11.2288 2.5954 39 1 7.2759 -10.2181 4.6629 40 1 8.5903 -11.9046 3.5981 41 1 8.9003 -8.4611 2.7656 42 1 9.0131 -8.4708 4.5426 43 1 7.5775 -6.6080 3.7374 44 1 6.6440 -7.7750 4.7040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000322264433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:15 Heat of formation + Delta-G solvation = -105.876364 kcal Electronic energy + Delta-G solvation = -20712.008790 eV Core-core repulsion = 17470.665098 eV Total energy + Delta-G solvation = -3241.343691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.67178 -37.45377 -36.81696 -35.33209 -32.85287 -32.36543 -31.27167 -29.62777 -27.26515 -26.05091 -23.88257 -23.39620 -22.35548 -21.37968 -21.19053 -20.16580 -17.69219 -16.49801 -16.45715 -16.07975 -15.55026 -15.27329 -15.08342 -14.87393 -14.61629 -14.31162 -14.09788 -13.80517 -13.26604 -13.17811 -13.03317 -12.58552 -12.35307 -12.02428 -11.68092 -11.62868 -11.54442 -11.40514 -11.25402 -10.99084 -10.81797 -10.73119 -10.64634 -10.50517 -10.14638 -10.00977 -9.10825 -8.82660 -8.58431 -8.22755 -8.17116 -6.11018 -4.12773 3.30140 3.35139 3.40315 3.48653 3.80701 4.34732 4.36588 4.39993 4.58033 4.73922 4.80150 4.93032 4.95079 5.04646 5.10120 5.17108 5.25436 5.30010 5.39840 5.45914 5.49613 5.52208 5.61692 5.68059 5.72746 5.79687 5.85320 5.89754 6.00314 6.08661 6.20362 6.34582 6.79457 6.82186 7.11244 7.21147 7.25493 7.43928 7.63582 7.78878 8.15271 8.57626 9.00341 9.52029 11.00481 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.031504 B = 0.002534 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.571141 B =11045.825197 C =11747.568625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.399 6.399 11 C 0.062 3.938 12 C 0.068 3.932 13 N -0.689 5.689 14 C 0.062 3.938 15 C 0.057 3.943 16 N -0.540 5.540 17 C 0.055 3.945 18 C -0.149 4.149 19 C 0.103 3.897 20 O -0.568 6.568 21 C -0.110 4.110 22 C 0.059 3.941 23 H 0.264 0.736 24 H 0.004 0.996 25 H 0.006 0.994 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.356 0.644 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.376 0.624 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.453 -21.654 6.971 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.319 6.319 11 C -0.016 4.016 12 C -0.061 4.061 13 N -0.323 5.323 14 C -0.068 4.068 15 C -0.071 4.071 16 N -0.265 5.265 17 C -0.073 4.073 18 C -0.187 4.187 19 C 0.044 3.956 20 O -0.374 6.374 21 C -0.147 4.147 22 C -0.069 4.069 23 H 0.073 0.927 24 H 0.022 0.978 25 H 0.024 0.976 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.175 0.825 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.223 0.777 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.662 -21.271 6.870 25.690 hybrid contribution -0.282 0.617 0.089 0.684 sum 12.380 -20.654 6.959 25.065 Atomic orbital electron populations 1.69968 1.06103 1.27140 1.50535 1.24959 0.94988 0.99453 0.95175 0.86334 0.79657 0.82274 0.78208 1.20494 1.21078 1.19632 1.21053 0.93999 0.89407 1.50815 0.91623 1.20176 0.88706 0.83460 0.95383 1.87788 1.35778 1.13128 1.95231 1.22299 0.94519 0.85285 0.99515 1.21922 0.95814 0.97979 0.90404 1.60423 1.26907 1.09211 1.35743 1.21880 0.92385 0.96255 0.96245 1.22038 0.92191 0.95214 0.97626 1.61865 1.19045 1.02428 1.43146 1.22083 0.95979 0.88216 1.01068 1.22325 0.97258 0.98539 1.00558 1.21882 0.87283 0.89999 0.96445 1.86523 1.35001 1.19031 1.96797 1.21540 0.97763 0.91799 1.03643 1.22039 0.93477 0.99819 0.91578 0.92661 0.97829 0.97612 0.94130 0.93585 0.94672 0.90807 0.82474 0.94535 0.91529 0.90414 0.93739 0.94730 0.89961 0.90123 0.91398 0.93113 0.77662 0.90196 0.90852 0.89803 0.94652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.51 -15.17 9.43 -34.44 -0.32 -15.50 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.20 5.43 5.69 36.00 0.20 5.64 16 10 O -0.40 -9.54 9.85 -35.23 -0.35 -9.89 16 11 C 0.06 1.16 6.28 37.16 0.23 1.39 16 12 C 0.07 1.04 6.11 -3.82 -0.02 1.01 16 13 N -0.69 -10.22 6.50 -113.78 -0.74 -10.96 16 14 C 0.06 0.75 5.61 -3.82 -0.02 0.73 16 15 C 0.06 0.63 5.22 -3.82 -0.02 0.61 16 16 N -0.54 -5.35 4.66 -234.67 -1.09 -6.44 16 17 C 0.05 0.47 5.29 -3.84 -0.02 0.45 16 18 C -0.15 -1.11 5.72 -26.65 -0.15 -1.26 16 19 C 0.10 0.80 3.54 -26.60 -0.09 0.71 16 20 O -0.57 -4.62 13.32 -35.23 -0.47 -5.09 16 21 C -0.11 -0.93 5.75 -26.65 -0.15 -1.08 16 22 C 0.06 0.52 5.46 -3.83 -0.02 0.50 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.36 5.84 8.29 -39.29 -0.33 5.52 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.75 6.43 -51.93 -0.33 0.41 16 33 H 0.08 0.88 7.99 -51.93 -0.41 0.47 16 34 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.71 6.21 -51.93 -0.32 0.38 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.38 1.46 9.09 45.56 0.41 1.88 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.72 8.01 -51.94 -0.42 0.30 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -31.98 352.28 -9.40 -41.38 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.28 Total: 0.40 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.49 Total: -5.31 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -1.10 Total: -43.66 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.82 Total: -14.97 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.98 -9.40 -41.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322264433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.501 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds