Wall clock time and date at job start Mon Mar 30 2020 05:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00256 * 2 1 4 4 H 1.48496 * 109.47188 * 270.00193 * 3 2 1 5 5 H 1.48495 * 109.46984 * 30.00197 * 3 2 1 6 6 H 1.48505 * 109.46908 * 149.99888 * 3 2 1 7 7 C 1.37882 * 119.99286 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99531 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00330 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99693 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46873 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46899 * 65.00475 * 12 11 10 14 14 C 1.46898 * 110.99673 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47006 * 179.97438 * 14 13 12 16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 13 17 17 C 1.46846 * 111.00018 * 294.20961 * 16 15 14 18 18 C 1.53033 * 109.52460 * 174.16134 * 17 16 15 19 19 C 1.53124 * 109.27811 * 59.18358 * 18 17 16 20 20 O 1.42899 * 109.52483 * 182.44119 * 19 18 17 21 21 C 1.53125 * 109.15751 * 302.34732 * 19 18 17 22 22 C 1.46851 * 110.99682 * 170.00115 * 16 15 14 23 23 H 0.97007 * 119.99707 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47363 * 59.99737 * 9 7 2 25 25 H 1.09005 * 109.46694 * 299.99874 * 9 7 2 26 26 H 1.08999 * 109.47110 * 60.00077 * 11 10 9 27 27 H 1.09001 * 109.47005 * 300.00216 * 11 10 9 28 28 H 1.08993 * 109.47042 * 305.00414 * 12 11 10 29 29 H 1.08995 * 109.46589 * 184.99655 * 12 11 10 30 30 H 1.00906 * 110.99345 * 303.95072 * 13 12 11 31 31 H 1.09001 * 109.47062 * 59.99745 * 14 13 12 32 32 H 1.08993 * 109.47084 * 299.99192 * 14 13 12 33 33 H 1.09001 * 109.46801 * 300.00064 * 15 14 13 34 34 H 1.09001 * 109.46998 * 59.99660 * 15 14 13 35 35 H 1.09002 * 109.46555 * 294.18280 * 17 16 15 36 36 H 1.09001 * 109.46296 * 54.14881 * 17 16 15 37 37 H 1.08997 * 109.50475 * 299.23909 * 18 17 16 38 38 H 1.09002 * 109.50799 * 179.12007 * 18 17 16 39 39 H 1.08998 * 109.57589 * 62.27874 * 19 18 17 40 40 H 0.96693 * 113.99955 * 299.68250 * 20 19 18 41 41 H 1.09005 * 109.50073 * 297.71107 * 21 19 18 42 42 H 1.08991 * 109.50379 * 177.59621 * 21 19 18 43 43 H 1.08989 * 109.46428 * 305.85572 * 22 16 15 44 44 H 1.09002 * 109.45912 * 65.83533 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0017 10 8 2.1794 -3.5854 -0.0027 11 6 1.5648 -4.8755 -0.0032 12 6 2.6477 -5.9564 -0.0049 13 7 3.4086 -5.8890 1.2499 14 6 4.4593 -6.9151 1.2841 15 6 5.2288 -6.8133 2.6026 16 7 6.2799 -7.8390 2.6365 17 6 5.6987 -9.1872 2.6682 18 6 6.8150 -10.2280 2.5561 19 6 7.7940 -10.0466 3.7194 20 8 8.8691 -10.9788 3.5886 21 6 8.3481 -8.6194 3.6920 22 6 7.1874 -7.6251 3.7711 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5563 -0.8919 25 1 0.6238 -2.5574 0.8881 26 1 0.9443 -4.9820 -0.8931 27 1 0.9449 -4.9830 0.8869 28 1 3.3206 -5.7951 -0.8470 29 1 2.1815 -6.9375 -0.0948 30 1 3.7973 -4.9681 1.3880 31 1 5.1449 -6.7609 0.4508 32 1 4.0054 -7.9027 1.2033 33 1 5.6827 -5.8256 2.6830 34 1 4.5434 -6.9671 3.4361 35 1 5.1622 -9.3295 3.6063 36 1 5.0077 -9.3045 1.8334 37 1 7.3430 -10.0951 1.6119 38 1 6.3848 -11.2288 2.5954 39 1 7.2759 -10.2181 4.6629 40 1 8.5903 -11.9046 3.5981 41 1 8.9003 -8.4611 2.7656 42 1 9.0131 -8.4708 4.5426 43 1 7.5775 -6.6080 3.7374 44 1 6.6440 -7.7750 4.7040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000322264433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:14 Heat of formation + Delta-G solvation = -131.989669 kcal Electronic energy + Delta-G solvation = -20713.141147 eV Core-core repulsion = 17470.665098 eV Total energy + Delta-G solvation = -3242.476049 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.36836 -38.92616 -37.79979 -36.53783 -34.89927 -33.35226 -31.92454 -30.92049 -29.13680 -27.31819 -24.64663 -24.52253 -24.10733 -22.71317 -22.11862 -20.82778 -18.64524 -18.28502 -17.60488 -17.30732 -16.91496 -16.49971 -16.35175 -16.22749 -15.53023 -15.34438 -15.18509 -15.14165 -14.44169 -14.28497 -14.09149 -13.79124 -13.37975 -13.17307 -13.06950 -12.91388 -12.72027 -12.61025 -12.51542 -12.30274 -12.20868 -12.05945 -11.85749 -11.72974 -11.29180 -11.27953 -10.87630 -10.75152 -10.23429 -9.41266 -9.33129 -8.32394 -6.44755 1.40117 1.42899 1.54939 2.34500 2.66712 3.01476 3.21289 3.26809 3.44702 3.74265 3.81374 3.98094 4.12763 4.17718 4.22467 4.26524 4.37322 4.37390 4.51911 4.56392 4.59105 4.60489 4.75186 4.77839 4.82937 4.86300 4.90248 4.93399 4.99113 5.01579 5.05254 5.14890 5.18385 5.32983 5.54484 5.95290 5.97232 6.05855 6.13964 6.37841 6.52915 6.81364 6.87750 7.27093 8.79919 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.031504 B = 0.002534 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.571141 B =11045.825197 C =11747.568625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.211 3.789 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.077 3.923 13 N -0.697 5.697 14 C 0.069 3.931 15 C 0.064 3.936 16 N -0.549 5.549 17 C 0.053 3.947 18 C -0.142 4.142 19 C 0.104 3.896 20 O -0.585 6.585 21 C -0.109 4.109 22 C 0.060 3.940 23 H 0.271 0.729 24 H -0.015 1.015 25 H -0.015 1.015 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.033 0.967 29 H 0.105 0.895 30 H 0.344 0.656 31 H 0.030 0.970 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.394 0.606 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.282 -22.280 7.283 26.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.136 3.864 10 O -0.329 6.329 11 C -0.024 4.024 12 C -0.052 4.052 13 N -0.329 5.329 14 C -0.060 4.060 15 C -0.064 4.064 16 N -0.274 5.274 17 C -0.075 4.075 18 C -0.180 4.180 19 C 0.045 3.955 20 O -0.393 6.393 21 C -0.147 4.147 22 C -0.068 4.068 23 H 0.079 0.921 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.123 0.877 30 H 0.162 0.838 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.244 0.756 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.492 -21.952 7.182 26.748 hybrid contribution -0.561 0.692 -0.001 0.891 sum 12.931 -21.260 7.181 25.899 Atomic orbital electron populations 1.70075 1.07774 1.28639 1.50506 1.25984 0.95986 1.03459 0.93965 0.85169 0.78375 0.76982 0.78804 1.19334 1.19959 1.18803 1.21387 0.94103 0.90817 1.52182 0.91943 1.19796 0.88581 0.84623 0.93413 1.87753 1.35530 1.14363 1.95219 1.22616 0.96075 0.83841 0.99819 1.21890 0.94903 0.97834 0.90554 1.60469 1.27884 1.09129 1.35441 1.21870 0.91704 0.95882 0.96568 1.21898 0.92265 0.95368 0.96834 1.61867 1.18821 1.02850 1.43868 1.22142 0.96411 0.87676 1.01267 1.22270 0.96706 0.99299 0.99687 1.21858 0.87216 0.89470 0.96967 1.86481 1.35527 1.20489 1.96830 1.21516 0.97548 0.92547 1.03058 1.22043 0.93406 0.99942 0.91410 0.92054 0.99711 0.99695 0.93257 0.93800 0.94901 0.87689 0.83839 0.95166 0.90172 0.91183 0.94105 0.94315 0.89921 0.91527 0.89246 0.92154 0.75601 0.91707 0.90330 0.89982 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.98 44.51 29.54 68.60 2.03 46.54 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.55 -32.75 9.43 25.60 0.24 -32.51 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.21 11.96 5.69 71.24 0.41 12.37 16 10 O -0.41 -19.86 9.85 -148.98 -1.47 -21.33 16 11 C 0.05 2.00 6.28 71.98 0.45 2.45 16 12 C 0.08 2.26 6.11 86.30 0.53 2.78 16 13 N -0.70 -20.14 6.50 -513.89 -3.34 -23.48 16 14 C 0.07 1.59 5.61 86.31 0.48 2.07 16 15 C 0.06 1.37 5.22 86.31 0.45 1.82 16 16 N -0.55 -10.34 4.66 -896.37 -4.17 -14.51 16 17 C 0.05 0.82 5.29 86.32 0.46 1.27 16 18 C -0.14 -1.85 5.72 30.65 0.18 -1.68 16 19 C 0.10 1.45 3.54 30.68 0.11 1.55 16 20 O -0.58 -8.55 13.32 -148.98 -1.99 -10.54 16 21 C -0.11 -1.75 5.75 30.65 0.18 -1.58 16 22 C 0.06 1.00 5.46 86.32 0.47 1.47 16 23 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 25 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.34 11.33 8.29 -89.69 -0.74 10.59 16 31 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.64 6.43 -2.39 -0.02 1.62 16 33 H 0.07 1.58 7.99 -2.39 -0.02 1.56 16 34 H 0.04 0.89 8.12 -2.39 -0.02 0.88 16 35 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 1.26 6.21 -2.39 -0.01 1.25 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.39 2.28 9.09 -74.06 -0.67 1.61 16 41 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.37 8.01 -2.39 -0.02 1.35 16 44 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -68.15 352.28 -4.69 -72.85 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.45 Total: 15.73 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 4.41 Total: -9.25 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -7.23 Total: -94.01 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -3.45 Total: -31.86 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -68.15 -4.69 -72.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322264433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.142 kcal (2) G-P(sol) polarization free energy of solvation -68.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds