Wall clock time and date at job start Mon Mar 30 2020 04:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.86932 * 2 1 4 4 O 1.43743 * 109.88298 * 121.01172 * 2 1 3 5 5 C 1.44375 * 106.97908 * 146.08623 * 4 2 1 6 6 C 1.54993 * 103.48945 * 319.93816 * 5 4 2 7 7 C 1.54100 * 110.00090 * 238.91621 * 2 1 3 8 8 H 1.08999 * 110.49199 * 119.79821 * 7 2 1 9 9 N 1.46901 * 110.49260 * 357.15050 * 7 2 1 10 10 C 1.46905 * 110.99853 * 283.36773 * 9 7 2 11 11 C 1.52998 * 109.47037 * 159.59476 * 10 9 7 12 12 O 1.42912 * 109.47038 * 67.10009 * 11 10 9 13 13 C 1.46900 * 111.00097 * 159.41274 * 9 7 2 14 14 C 1.50697 * 109.47180 * 283.20727 * 13 9 7 15 15 O 1.21300 * 119.99857 * 358.75346 * 14 13 9 16 16 N 1.34770 * 120.00467 * 178.75911 * 14 13 9 17 17 C 1.37097 * 120.00281 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00405 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99784 * 179.97438 * 17 16 14 20 20 N 1.31415 * 120.00031 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47291 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47107 * 119.99884 * 21 19 17 24 24 H 1.48500 * 109.46838 * 239.99652 * 21 19 17 25 25 H 1.09002 * 109.47066 * 307.89150 * 1 2 3 26 26 H 1.09002 * 109.47534 * 67.89528 * 1 2 3 27 27 H 1.09005 * 109.47344 * 187.89236 * 1 2 3 28 28 H 1.09002 * 110.61536 * 201.43514 * 5 4 2 29 29 H 1.08997 * 110.75209 * 78.50601 * 5 4 2 30 30 H 1.09006 * 110.90592 * 155.22215 * 6 5 4 31 31 H 1.09000 * 110.90851 * 278.82501 * 6 5 4 32 32 H 1.08996 * 109.46997 * 279.59717 * 10 9 7 33 33 H 1.08997 * 109.46745 * 39.59884 * 10 9 7 34 34 H 1.09000 * 109.47404 * 187.09673 * 11 10 9 35 35 H 1.08996 * 109.47444 * 307.10342 * 11 10 9 36 36 H 0.96700 * 113.99927 * 184.96940 * 12 11 10 37 37 H 1.08996 * 109.47526 * 43.20846 * 13 9 7 38 38 H 1.09004 * 109.46759 * 163.21117 * 13 9 7 39 39 H 0.97004 * 119.99888 * 359.97438 * 16 14 13 40 40 H 0.97007 * 119.99586 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6964 1.1585 5 6 3.2398 -1.3602 0.7674 6 6 2.9243 -1.8888 -0.6551 7 6 2.0570 -0.7476 -1.2401 8 1 2.6643 -0.0843 -1.8560 9 7 0.9415 -1.2984 -2.0213 10 6 0.3983 -2.5056 -1.3843 11 6 -1.0211 -2.7579 -1.8967 12 8 -0.9729 -3.1026 -3.2828 13 6 1.3523 -1.5726 -3.4047 14 6 1.4156 -0.2793 -4.1757 15 8 1.1232 0.7653 -3.6328 16 7 1.7969 -0.2831 -5.4683 17 6 1.8549 0.8935 -6.1694 18 1 1.5947 1.8236 -5.6861 19 6 2.2486 0.8895 -7.5020 20 7 2.5648 -0.2423 -8.0903 21 14 2.3284 2.4929 -8.4572 22 1 1.9266 3.6163 -7.5731 23 1 3.7158 2.7140 -8.9382 24 1 1.4068 2.4229 -9.6195 25 1 -0.3633 0.6312 0.8110 26 1 -0.3634 0.3867 -0.9521 27 1 -0.3634 -1.0180 0.1411 28 1 3.4613 -2.1861 1.4435 29 1 4.0707 -0.6553 0.7394 30 1 3.8390 -2.0181 -1.2337 31 1 2.3606 -2.8205 -0.6076 32 1 1.0297 -3.3601 -1.6275 33 1 0.3750 -2.3669 -0.3035 34 1 -1.4704 -3.5763 -1.3343 35 1 -1.6198 -1.8563 -1.7673 36 1 -1.8425 -3.2024 -3.6938 37 1 2.3349 -2.0443 -3.4053 38 1 0.6287 -2.2397 -3.8732 39 1 2.0310 -1.1184 -5.9024 40 1 2.8400 -0.2450 -9.0205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331176810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:35 Heat of formation + Delta-G solvation = -106.487083 kcal Electronic energy + Delta-G solvation = -22543.549429 eV Core-core repulsion = 19166.346161 eV Total energy + Delta-G solvation = -3377.203269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.24818 -38.06459 -37.08565 -35.37547 -33.74349 -31.36619 -31.14894 -30.71551 -29.54005 -26.47437 -24.94613 -23.94943 -22.65128 -21.30040 -19.92171 -18.78224 -17.77684 -17.38694 -16.58141 -16.13010 -15.71898 -15.42040 -15.06750 -14.53005 -14.39714 -13.92191 -13.61070 -13.57465 -13.20192 -12.83812 -12.46010 -12.28858 -12.07365 -11.85138 -11.56896 -11.43385 -11.36793 -11.05975 -10.99236 -10.74170 -10.54850 -10.39180 -10.30227 -10.15297 -9.76682 -9.49344 -9.40423 -8.33275 -7.87258 -7.78824 -6.34164 -3.74406 3.20310 3.30033 3.37315 3.90377 4.03856 4.04401 4.27240 4.36539 4.74091 4.91877 4.99371 5.15069 5.19827 5.29961 5.31424 5.35601 5.38412 5.58293 5.65558 5.68496 5.76596 5.78619 5.87182 5.88046 6.09617 6.14682 6.16960 6.30226 6.38097 6.52691 6.74932 7.06233 7.35932 7.39459 7.61934 7.76173 8.15615 8.71960 9.27017 9.65689 10.18469 10.84013 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.005174 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.258006 B = 5410.579090 C = 5968.141193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.082 3.918 3 H 0.070 0.930 4 O -0.382 6.382 5 C 0.051 3.949 6 C -0.199 4.199 7 C 0.064 3.936 8 H 0.100 0.900 9 N -0.493 5.493 10 C 0.045 3.955 11 C 0.080 3.920 12 O -0.566 6.566 13 C 0.033 3.967 14 C 0.449 3.551 15 O -0.580 6.580 16 N -0.570 5.570 17 C -0.295 4.295 18 H 0.102 0.898 19 C 0.020 3.980 20 N -0.904 5.904 21 Si 0.927 3.073 22 H -0.269 1.269 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.042 0.958 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.375 0.625 37 H 0.042 0.958 38 H 0.121 0.879 39 H 0.391 0.609 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 -7.501 13.386 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.025 3.975 3 H 0.088 0.912 4 O -0.302 6.302 5 C -0.026 4.026 6 C -0.239 4.239 7 C -0.046 4.046 8 H 0.118 0.882 9 N -0.215 5.215 10 C -0.083 4.083 11 C 0.002 3.998 12 O -0.372 6.372 13 C -0.098 4.098 14 C 0.235 3.765 15 O -0.463 6.463 16 N -0.207 5.207 17 C -0.424 4.424 18 H 0.120 0.880 19 C -0.181 4.181 20 N -0.546 5.546 21 Si 0.754 3.246 22 H -0.193 1.193 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.061 0.939 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.223 0.777 37 H 0.060 0.940 38 H 0.139 0.861 39 H 0.224 0.776 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.783 -6.430 13.855 15.526 hybrid contribution 0.534 -0.404 -1.193 1.368 sum -2.249 -6.834 12.663 14.564 Atomic orbital electron populations 1.21925 0.92909 1.01937 1.02729 1.22713 0.96238 0.95148 0.83438 0.91245 1.88859 1.39184 1.68048 1.34083 1.23359 0.88131 0.96175 0.94901 1.23982 1.01659 1.00719 0.97498 1.23117 0.90914 0.95348 0.95203 0.88182 1.61674 1.31374 1.27493 1.00964 1.22470 0.94570 0.91954 0.99264 1.22247 0.97129 0.98372 0.82079 1.86439 1.34072 1.92886 1.23843 1.22257 1.00602 0.97809 0.89121 1.19876 0.83582 0.90091 0.82999 1.90498 1.53473 1.33042 1.69311 1.41874 1.59552 1.10116 1.09158 1.19722 1.42042 0.87727 0.92936 0.88034 1.25231 0.97464 0.98414 0.96996 1.69632 1.46361 1.25555 1.13060 0.85837 0.77683 0.81709 0.79321 1.19315 1.20896 1.20834 0.93883 0.88993 0.92161 0.89490 0.92348 0.90359 0.89709 0.94036 0.88570 0.93843 0.92485 0.77701 0.94020 0.86099 0.77605 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.42 37.16 0.31 -1.67 16 2 C 0.08 1.25 3.76 -26.16 -0.10 1.15 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 4 O -0.38 -5.50 11.19 -35.23 -0.39 -5.89 16 5 C 0.05 0.61 7.72 38.21 0.29 0.90 16 6 C -0.20 -2.53 6.16 -24.72 -0.15 -2.68 16 7 C 0.06 1.01 2.54 -66.18 -0.17 0.84 16 8 H 0.10 1.88 7.04 -51.93 -0.37 1.51 16 9 N -0.49 -8.02 2.52 -226.25 -0.57 -8.59 16 10 C 0.05 0.59 2.90 -3.82 -0.01 0.58 16 11 C 0.08 0.94 7.25 37.16 0.27 1.21 16 12 O -0.57 -7.37 10.74 -35.23 -0.38 -7.75 16 13 C 0.03 0.61 5.19 -4.98 -0.03 0.58 16 14 C 0.45 10.76 7.34 -10.99 -0.08 10.68 16 15 O -0.58 -15.62 15.18 5.54 0.08 -15.53 16 16 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 17 C -0.29 -8.33 9.68 -14.93 -0.14 -8.47 16 18 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 19 C 0.02 0.54 5.50 -17.47 -0.10 0.45 16 20 N -0.90 -25.06 13.05 55.50 0.72 -24.34 16 21 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 1.54 7.59 -51.93 -0.39 1.15 16 27 H 0.06 0.79 5.03 -51.93 -0.26 0.53 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.02 5.15 -51.93 -0.27 0.75 16 32 H 0.04 0.54 6.86 -51.93 -0.36 0.18 16 33 H 0.10 1.18 5.19 -51.93 -0.27 0.91 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.38 3.38 9.12 45.56 0.42 3.80 16 37 H 0.04 0.74 7.82 -51.93 -0.41 0.33 16 38 H 0.12 2.22 4.92 -51.93 -0.26 1.97 16 39 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 314.36 15.07 4.74 4.74 Total: -1.00 -32.09 314.36 -5.73 -37.82 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -4.95 Total: 14.43 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.10 Total: 3.56 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.10 Total: -47.72 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.69 Total: -29.17 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.09 -5.73 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331176810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.665 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds