Wall clock time and date at job start Mon Mar 30 2020 04:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.86932 * 2 1 4 4 O 1.43743 * 109.88298 * 121.01172 * 2 1 3 5 5 C 1.44375 * 106.97908 * 146.08623 * 4 2 1 6 6 C 1.54993 * 103.48945 * 319.93816 * 5 4 2 7 7 C 1.54100 * 110.00090 * 238.91621 * 2 1 3 8 8 H 1.08999 * 110.49199 * 119.79821 * 7 2 1 9 9 N 1.46901 * 110.49260 * 357.15050 * 7 2 1 10 10 C 1.46905 * 110.99853 * 283.36773 * 9 7 2 11 11 C 1.52998 * 109.47037 * 159.59476 * 10 9 7 12 12 O 1.42912 * 109.47038 * 67.10009 * 11 10 9 13 13 C 1.46900 * 111.00097 * 159.41274 * 9 7 2 14 14 C 1.50697 * 109.47180 * 283.20727 * 13 9 7 15 15 O 1.21300 * 119.99857 * 358.75346 * 14 13 9 16 16 N 1.34770 * 120.00467 * 178.75911 * 14 13 9 17 17 C 1.37097 * 120.00281 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00405 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99784 * 179.97438 * 17 16 14 20 20 N 1.31415 * 120.00031 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47291 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47107 * 119.99884 * 21 19 17 24 24 H 1.48500 * 109.46838 * 239.99652 * 21 19 17 25 25 H 1.09002 * 109.47066 * 307.89150 * 1 2 3 26 26 H 1.09002 * 109.47534 * 67.89528 * 1 2 3 27 27 H 1.09005 * 109.47344 * 187.89236 * 1 2 3 28 28 H 1.09002 * 110.61536 * 201.43514 * 5 4 2 29 29 H 1.08997 * 110.75209 * 78.50601 * 5 4 2 30 30 H 1.09006 * 110.90592 * 155.22215 * 6 5 4 31 31 H 1.09000 * 110.90851 * 278.82501 * 6 5 4 32 32 H 1.08996 * 109.46997 * 279.59717 * 10 9 7 33 33 H 1.08997 * 109.46745 * 39.59884 * 10 9 7 34 34 H 1.09000 * 109.47404 * 187.09673 * 11 10 9 35 35 H 1.08996 * 109.47444 * 307.10342 * 11 10 9 36 36 H 0.96700 * 113.99927 * 184.96940 * 12 11 10 37 37 H 1.08996 * 109.47526 * 43.20846 * 13 9 7 38 38 H 1.09004 * 109.46759 * 163.21117 * 13 9 7 39 39 H 0.97004 * 119.99888 * 359.97438 * 16 14 13 40 40 H 0.97007 * 119.99586 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6964 1.1585 5 6 3.2398 -1.3602 0.7674 6 6 2.9243 -1.8888 -0.6551 7 6 2.0570 -0.7476 -1.2401 8 1 2.6643 -0.0843 -1.8560 9 7 0.9415 -1.2984 -2.0213 10 6 0.3983 -2.5056 -1.3843 11 6 -1.0211 -2.7579 -1.8967 12 8 -0.9729 -3.1026 -3.2828 13 6 1.3523 -1.5726 -3.4047 14 6 1.4156 -0.2793 -4.1757 15 8 1.1232 0.7653 -3.6328 16 7 1.7969 -0.2831 -5.4683 17 6 1.8549 0.8935 -6.1694 18 1 1.5947 1.8236 -5.6861 19 6 2.2486 0.8895 -7.5020 20 7 2.5648 -0.2423 -8.0903 21 14 2.3284 2.4929 -8.4572 22 1 1.9266 3.6163 -7.5731 23 1 3.7158 2.7140 -8.9382 24 1 1.4068 2.4229 -9.6195 25 1 -0.3633 0.6312 0.8110 26 1 -0.3634 0.3867 -0.9521 27 1 -0.3634 -1.0180 0.1411 28 1 3.4613 -2.1861 1.4435 29 1 4.0707 -0.6553 0.7394 30 1 3.8390 -2.0181 -1.2337 31 1 2.3606 -2.8205 -0.6076 32 1 1.0297 -3.3601 -1.6275 33 1 0.3750 -2.3669 -0.3035 34 1 -1.4704 -3.5763 -1.3343 35 1 -1.6198 -1.8563 -1.7673 36 1 -1.8425 -3.2024 -3.6938 37 1 2.3349 -2.0443 -3.4053 38 1 0.6287 -2.2397 -3.8732 39 1 2.0310 -1.1184 -5.9024 40 1 2.8400 -0.2450 -9.0205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331176810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:35 Heat of formation + Delta-G solvation = -132.429138 kcal Electronic energy + Delta-G solvation = -22544.674361 eV Core-core repulsion = 19166.346161 eV Total energy + Delta-G solvation = -3378.328201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.45992 -39.82426 -38.25414 -36.57700 -35.77390 -33.23365 -32.44251 -31.91714 -30.77416 -28.01183 -26.42202 -25.47271 -23.69576 -22.40592 -21.47375 -20.40368 -19.73147 -18.45853 -17.77994 -17.57454 -17.17868 -16.54984 -16.50262 -16.13459 -15.84448 -15.49026 -15.26792 -14.87618 -14.36508 -14.20691 -13.83040 -13.48532 -13.44410 -13.34070 -13.21456 -12.90866 -12.61772 -12.59101 -12.37517 -12.11503 -12.08388 -11.88065 -11.68237 -11.57077 -11.44647 -10.73597 -10.60373 -10.19598 -9.95854 -9.12483 -8.43357 -5.91591 1.37118 1.41224 1.55656 2.13355 2.29750 2.69923 2.94458 3.23424 3.40821 3.46864 3.66584 3.81073 4.03346 4.10678 4.17419 4.28478 4.34529 4.47094 4.48900 4.53964 4.58121 4.68086 4.72443 4.77787 4.85777 4.98345 5.01496 5.04371 5.10650 5.22494 5.43314 5.54232 5.92464 5.94396 6.12863 6.22285 6.65477 6.98837 7.17498 7.62601 8.19200 8.74674 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.005174 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.258006 B = 5410.579090 C = 5968.141193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.085 3.915 3 H 0.053 0.947 4 O -0.387 6.387 5 C 0.050 3.950 6 C -0.190 4.190 7 C 0.059 3.941 8 H 0.060 0.940 9 N -0.504 5.504 10 C 0.045 3.955 11 C 0.080 3.920 12 O -0.589 6.589 13 C 0.050 3.950 14 C 0.447 3.553 15 O -0.614 6.614 16 N -0.580 5.580 17 C -0.328 4.328 18 H 0.077 0.923 19 C -0.015 4.015 20 N -0.924 5.924 21 Si 0.992 3.008 22 H -0.274 1.274 23 H -0.272 1.272 24 H -0.271 1.271 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.392 0.608 37 H 0.053 0.947 38 H 0.130 0.870 39 H 0.393 0.607 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 -8.879 14.141 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.026 3.974 3 H 0.071 0.929 4 O -0.307 6.307 5 C -0.027 4.027 6 C -0.229 4.229 7 C -0.050 4.050 8 H 0.079 0.921 9 N -0.227 5.227 10 C -0.082 4.082 11 C 0.002 3.998 12 O -0.398 6.398 13 C -0.081 4.081 14 C 0.234 3.766 15 O -0.499 6.499 16 N -0.217 5.217 17 C -0.457 4.457 18 H 0.095 0.905 19 C -0.214 4.214 20 N -0.565 5.565 21 Si 0.816 3.184 22 H -0.199 1.199 23 H -0.197 1.197 24 H -0.196 1.196 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.242 0.758 37 H 0.071 0.929 38 H 0.148 0.852 39 H 0.226 0.774 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.870 -7.840 14.617 16.834 hybrid contribution 0.553 0.010 -1.378 1.485 sum -2.317 -7.830 13.240 15.555 Atomic orbital electron populations 1.21804 0.92343 1.02984 1.01500 1.22571 0.96683 0.94462 0.83648 0.92919 1.88846 1.40248 1.68086 1.33490 1.23566 0.87231 0.96969 0.94895 1.23926 1.01283 0.99902 0.97784 1.23008 0.91072 0.96121 0.94828 0.92136 1.61622 1.31645 1.29494 0.99974 1.22591 0.95298 0.90582 0.99698 1.22312 0.96212 0.99285 0.82000 1.86344 1.35850 1.92914 1.24671 1.22052 1.01575 0.94399 0.90069 1.20862 0.81542 0.91658 0.82490 1.90469 1.54492 1.35061 1.69896 1.41947 1.60345 1.09539 1.09915 1.19667 1.44188 0.87872 0.94020 0.90493 1.26015 0.96391 1.01812 0.97222 1.69696 1.46121 1.27095 1.13614 0.84887 0.78250 0.77447 0.77829 1.19888 1.19690 1.19586 0.92915 0.91791 0.90500 0.86475 0.92031 0.89974 0.88289 0.93201 0.87318 0.90497 0.93382 0.75790 0.92885 0.85237 0.77364 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 8.42 71.98 0.61 -3.05 16 2 C 0.08 2.55 3.76 30.97 0.12 2.66 16 3 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 4 O -0.39 -10.42 11.19 -148.98 -1.67 -12.09 16 5 C 0.05 1.06 7.72 72.66 0.56 1.62 16 6 C -0.19 -4.46 6.16 31.90 0.20 -4.26 16 7 C 0.06 1.87 2.54 45.91 0.12 1.99 16 8 H 0.06 2.37 7.04 -2.39 -0.02 2.36 16 9 N -0.50 -16.17 2.52 -869.73 -2.19 -18.36 16 10 C 0.05 1.07 2.90 86.30 0.25 1.32 16 11 C 0.08 1.69 7.25 71.98 0.52 2.21 16 12 O -0.59 -14.27 10.74 -148.98 -1.60 -15.87 16 13 C 0.05 1.85 5.19 85.56 0.44 2.29 16 14 C 0.45 22.07 7.34 87.66 0.64 22.71 16 15 O -0.61 -34.50 15.18 -3.09 -0.05 -34.55 16 16 N -0.58 -30.87 5.29 -306.99 -1.62 -32.50 16 17 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 18 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 19 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 20 N -0.92 -51.11 13.05 21.66 0.28 -50.83 16 21 Si 0.99 43.91 29.55 68.60 2.03 45.93 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 2.19 7.59 -2.39 -0.02 2.17 16 27 H 0.08 1.88 5.03 -2.38 -0.01 1.86 16 28 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.10 2.06 5.15 -2.39 -0.01 2.05 16 32 H 0.05 1.13 6.86 -2.39 -0.02 1.12 16 33 H 0.11 2.33 5.19 -2.39 -0.01 2.31 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.39 6.41 9.12 -74.06 -0.68 5.74 16 37 H 0.05 1.85 7.82 -2.39 -0.02 1.83 16 38 H 0.13 4.66 4.92 -2.39 -0.01 4.65 16 39 H 0.39 20.20 7.90 -92.71 -0.73 19.47 16 40 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -70.09 314.36 -0.41 -70.50 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -0.33 Total: 38.90 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 4.74 Total: 8.85 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -3.53 Total: -101.68 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -3.31 Total: -62.50 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.09 -0.41 -70.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331176810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.930 kcal (2) G-P(sol) polarization free energy of solvation -70.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds