Wall clock time and date at job start Mon Mar 30 2020 04:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.99487 * 2 1 4 4 O 1.44123 * 109.85769 * 238.96754 * 2 1 3 5 5 C 1.44380 * 106.77546 * 214.08568 * 4 2 1 6 6 C 1.54997 * 103.63026 * 40.03735 * 5 4 2 7 7 C 1.54098 * 109.87930 * 121.08372 * 2 1 3 8 8 H 1.08995 * 110.49068 * 240.12761 * 7 2 1 9 9 N 1.46905 * 110.48904 * 2.77641 * 7 2 1 10 10 C 1.46899 * 110.99915 * 78.87797 * 9 7 2 11 11 C 1.53001 * 109.46893 * 195.73131 * 10 9 7 12 12 O 1.42896 * 109.47250 * 62.21966 * 11 10 9 13 13 C 1.46894 * 110.99917 * 202.82799 * 9 7 2 14 14 C 1.50709 * 109.47071 * 77.00756 * 13 9 7 15 15 O 1.21287 * 119.99546 * 6.00545 * 14 13 9 16 16 N 1.34780 * 119.99860 * 185.99703 * 14 13 9 17 17 C 1.37096 * 119.99565 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00100 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99920 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99860 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47303 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47332 * 120.00319 * 21 19 17 24 24 H 1.48513 * 109.46834 * 240.00008 * 21 19 17 25 25 H 1.09003 * 109.46810 * 290.95120 * 1 2 3 26 26 H 1.08994 * 109.47546 * 50.95287 * 1 2 3 27 27 H 1.09001 * 109.47163 * 170.95827 * 1 2 3 28 28 H 1.09000 * 110.61618 * 281.45835 * 5 4 2 29 29 H 1.09001 * 110.61693 * 158.61652 * 5 4 2 30 30 H 1.09000 * 110.90543 * 81.08938 * 6 5 4 31 31 H 1.08997 * 110.90931 * 204.69562 * 6 5 4 32 32 H 1.09003 * 109.47123 * 315.73116 * 10 9 7 33 33 H 1.08995 * 109.47425 * 75.72587 * 10 9 7 34 34 H 1.09002 * 109.46745 * 182.21862 * 11 10 9 35 35 H 1.08994 * 109.47012 * 302.21529 * 11 10 9 36 36 H 0.96701 * 114.00327 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.47302 * 197.00530 * 13 9 7 38 38 H 1.08997 * 109.47754 * 317.00943 * 13 9 7 39 39 H 0.96995 * 120.00064 * 0.02562 * 16 14 13 40 40 H 0.96997 * 119.99932 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0195 -0.6988 -1.1615 5 6 3.2379 -1.3642 -0.7647 6 6 2.9196 -1.8915 0.6576 7 6 2.0540 -0.7482 1.2411 8 1 2.6619 -0.0859 1.8574 9 7 0.9362 -1.2962 2.0211 10 6 0.4258 -2.5320 1.4127 11 6 -0.9497 -2.8582 1.9981 12 8 -1.8646 -1.8080 1.6786 13 6 1.3297 -1.5210 3.4184 14 6 1.3516 -0.2047 4.1520 15 8 0.9635 0.8034 3.6005 16 7 1.8023 -0.1478 5.4209 17 6 1.8227 1.0497 6.0881 18 1 1.4772 1.9474 5.5969 19 6 2.2878 1.1084 7.3961 20 7 2.7086 0.0162 7.9935 21 14 2.3149 2.7400 8.3053 22 1 1.7932 3.8101 7.4177 23 1 1.4646 2.6446 9.5189 24 1 3.7093 3.0625 8.7020 25 1 -0.3633 0.3675 0.9598 26 1 -0.3634 0.6473 -0.7980 27 1 -0.3633 -1.0149 -0.1615 28 1 4.0684 -0.6589 -0.7357 29 1 3.4611 -2.1907 -1.4395 30 1 2.3539 -2.8220 0.6099 31 1 3.8332 -2.0225 1.2374 32 1 0.3391 -2.3974 0.3345 33 1 1.1135 -3.3513 1.6223 34 1 -1.3111 -3.7959 1.5758 35 1 -0.8703 -2.9541 3.0809 36 1 -2.7587 -1.9481 2.0193 37 1 0.6131 -2.1903 3.8945 38 1 2.3222 -1.9703 3.4487 39 1 2.1129 -0.9540 5.8619 40 1 3.0336 0.0573 8.9064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331176811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:38 Heat of formation + Delta-G solvation = -104.770816 kcal Electronic energy + Delta-G solvation = -22539.353599 eV Core-core repulsion = 19162.224753 eV Total energy + Delta-G solvation = -3377.128846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19488 -38.08443 -36.99424 -35.40381 -33.79791 -31.29291 -31.11781 -30.83849 -29.35907 -26.54911 -24.93742 -24.17087 -22.59199 -21.06650 -19.98618 -18.78647 -17.81765 -17.29478 -16.51737 -16.26658 -15.73455 -15.44569 -14.71415 -14.54921 -14.48840 -14.05671 -13.75686 -13.49142 -13.15069 -12.81920 -12.42504 -12.15979 -12.02765 -11.80805 -11.59262 -11.41776 -11.36864 -11.09918 -11.03974 -10.73089 -10.39137 -10.32868 -10.29814 -10.19568 -9.74128 -9.47549 -9.39433 -8.39588 -7.92226 -7.78749 -6.38959 -3.79248 3.17784 3.28078 3.35492 3.86332 3.96068 4.09252 4.23989 4.39733 4.72952 4.94661 4.99255 5.11191 5.20999 5.23737 5.30863 5.32328 5.42985 5.57769 5.58395 5.69881 5.74681 5.81682 5.86640 5.88960 5.93967 6.05705 6.14528 6.30912 6.38771 6.58283 7.10130 7.14700 7.31543 7.36712 7.58114 7.86677 8.10485 8.66421 9.22442 9.59124 10.11977 10.79202 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.005054 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.623110 B = 5538.589340 C = 5950.871419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.082 3.918 3 H 0.068 0.932 4 O -0.382 6.382 5 C 0.051 3.949 6 C -0.201 4.201 7 C 0.066 3.934 8 H 0.097 0.903 9 N -0.485 5.485 10 C 0.045 3.955 11 C 0.082 3.918 12 O -0.549 6.549 13 C 0.040 3.960 14 C 0.446 3.554 15 O -0.568 6.568 16 N -0.570 5.570 17 C -0.295 4.295 18 H 0.103 0.897 19 C 0.020 3.980 20 N -0.905 5.905 21 Si 0.927 3.073 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.097 0.903 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.369 0.631 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.390 0.610 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 -8.900 -11.925 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.024 3.976 3 H 0.086 0.914 4 O -0.302 6.302 5 C -0.026 4.026 6 C -0.240 4.240 7 C -0.043 4.043 8 H 0.115 0.885 9 N -0.207 5.207 10 C -0.083 4.083 11 C 0.003 3.997 12 O -0.353 6.353 13 C -0.091 4.091 14 C 0.231 3.769 15 O -0.451 6.451 16 N -0.208 5.208 17 C -0.424 4.424 18 H 0.121 0.879 19 C -0.181 4.181 20 N -0.547 5.547 21 Si 0.755 3.245 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.209 1.209 25 H 0.116 0.884 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.215 0.785 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.223 0.777 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.075 -7.626 -12.606 14.879 hybrid contribution 0.710 -0.695 1.503 1.802 sum -1.365 -8.320 -11.103 13.942 Atomic orbital electron populations 1.21836 0.91686 1.02302 1.02874 1.22834 0.96966 0.94749 0.83060 0.91447 1.88960 1.39197 1.67919 1.34095 1.23333 0.88368 0.96176 0.94741 1.23995 1.01496 1.00777 0.97693 1.23069 0.90520 0.95337 0.95391 0.88477 1.61642 1.32245 1.26643 1.00166 1.22472 0.93729 0.91237 1.00871 1.22188 0.89914 0.89139 0.98453 1.86668 1.22812 1.46063 1.79716 1.21980 0.99655 0.97766 0.89703 1.19758 0.84185 0.89897 0.83057 1.90530 1.51084 1.35979 1.67500 1.41887 1.56777 1.10882 1.11256 1.19733 1.39514 0.87977 0.95203 0.87936 1.25231 0.97197 0.98721 0.96909 1.69619 1.43560 1.27542 1.13956 0.85827 0.77754 0.81736 0.79195 1.19243 1.20812 1.20856 0.88447 0.94652 0.91620 0.92454 0.89587 0.89616 0.90394 0.88874 0.93616 0.94012 0.93793 0.78529 0.89507 0.93475 0.77699 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 7.99 37.16 0.30 -1.84 16 2 C 0.08 1.32 3.83 -26.16 -0.10 1.22 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 4 O -0.38 -5.82 11.22 -35.23 -0.40 -6.22 16 5 C 0.05 0.62 7.71 38.21 0.29 0.91 16 6 C -0.20 -2.50 6.28 -24.72 -0.16 -2.65 16 7 C 0.07 1.06 2.56 -66.18 -0.17 0.89 16 8 H 0.10 1.80 7.20 -51.93 -0.37 1.42 16 9 N -0.48 -7.85 2.32 -226.25 -0.53 -8.37 16 10 C 0.04 0.58 2.98 -3.82 -0.01 0.57 16 11 C 0.08 0.97 7.17 37.16 0.27 1.23 16 12 O -0.55 -7.33 12.43 -35.23 -0.44 -7.77 16 13 C 0.04 0.70 5.25 -4.98 -0.03 0.68 16 14 C 0.45 10.40 7.25 -10.98 -0.08 10.32 16 15 O -0.57 -15.26 15.47 5.55 0.09 -15.17 16 16 N -0.57 -14.34 5.29 -10.96 -0.06 -14.40 16 17 C -0.29 -8.20 9.68 -14.93 -0.14 -8.34 16 18 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 19 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 20 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 21 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H 0.10 1.89 7.52 -51.93 -0.39 1.50 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.04 4.61 -51.93 -0.24 0.81 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.99 5.00 -51.93 -0.26 0.73 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.26 5.35 -51.93 -0.28 0.98 16 33 H 0.05 0.51 6.68 -51.93 -0.35 0.17 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.04 0.53 6.47 -51.93 -0.34 0.20 16 36 H 0.37 3.35 9.12 45.56 0.42 3.77 16 37 H 0.09 1.38 6.19 -51.93 -0.32 1.06 16 38 H 0.05 0.75 7.90 -51.93 -0.41 0.34 16 39 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -32.19 315.11 -5.72 -37.90 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -4.91 Total: 13.65 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 0.08 Total: 3.42 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.14 Total: -46.69 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.75 Total: -29.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.19 -5.72 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331176811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.868 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds