Wall clock time and date at job start Mon Mar 30 2020 04:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.99487 * 2 1 4 4 O 1.44123 * 109.85769 * 238.96754 * 2 1 3 5 5 C 1.44380 * 106.77546 * 214.08568 * 4 2 1 6 6 C 1.54997 * 103.63026 * 40.03735 * 5 4 2 7 7 C 1.54098 * 109.87930 * 121.08372 * 2 1 3 8 8 H 1.08995 * 110.49068 * 240.12761 * 7 2 1 9 9 N 1.46905 * 110.48904 * 2.77641 * 7 2 1 10 10 C 1.46899 * 110.99915 * 78.87797 * 9 7 2 11 11 C 1.53001 * 109.46893 * 195.73131 * 10 9 7 12 12 O 1.42896 * 109.47250 * 62.21966 * 11 10 9 13 13 C 1.46894 * 110.99917 * 202.82799 * 9 7 2 14 14 C 1.50709 * 109.47071 * 77.00756 * 13 9 7 15 15 O 1.21287 * 119.99546 * 6.00545 * 14 13 9 16 16 N 1.34780 * 119.99860 * 185.99703 * 14 13 9 17 17 C 1.37096 * 119.99565 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00100 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99920 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99860 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47303 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47332 * 120.00319 * 21 19 17 24 24 H 1.48513 * 109.46834 * 240.00008 * 21 19 17 25 25 H 1.09003 * 109.46810 * 290.95120 * 1 2 3 26 26 H 1.08994 * 109.47546 * 50.95287 * 1 2 3 27 27 H 1.09001 * 109.47163 * 170.95827 * 1 2 3 28 28 H 1.09000 * 110.61618 * 281.45835 * 5 4 2 29 29 H 1.09001 * 110.61693 * 158.61652 * 5 4 2 30 30 H 1.09000 * 110.90543 * 81.08938 * 6 5 4 31 31 H 1.08997 * 110.90931 * 204.69562 * 6 5 4 32 32 H 1.09003 * 109.47123 * 315.73116 * 10 9 7 33 33 H 1.08995 * 109.47425 * 75.72587 * 10 9 7 34 34 H 1.09002 * 109.46745 * 182.21862 * 11 10 9 35 35 H 1.08994 * 109.47012 * 302.21529 * 11 10 9 36 36 H 0.96701 * 114.00327 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.47302 * 197.00530 * 13 9 7 38 38 H 1.08997 * 109.47754 * 317.00943 * 13 9 7 39 39 H 0.96995 * 120.00064 * 0.02562 * 16 14 13 40 40 H 0.96997 * 119.99932 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0195 -0.6988 -1.1615 5 6 3.2379 -1.3642 -0.7647 6 6 2.9196 -1.8915 0.6576 7 6 2.0540 -0.7482 1.2411 8 1 2.6619 -0.0859 1.8574 9 7 0.9362 -1.2962 2.0211 10 6 0.4258 -2.5320 1.4127 11 6 -0.9497 -2.8582 1.9981 12 8 -1.8646 -1.8080 1.6786 13 6 1.3297 -1.5210 3.4184 14 6 1.3516 -0.2047 4.1520 15 8 0.9635 0.8034 3.6005 16 7 1.8023 -0.1478 5.4209 17 6 1.8227 1.0497 6.0881 18 1 1.4772 1.9474 5.5969 19 6 2.2878 1.1084 7.3961 20 7 2.7086 0.0162 7.9935 21 14 2.3149 2.7400 8.3053 22 1 1.7932 3.8101 7.4177 23 1 1.4646 2.6446 9.5189 24 1 3.7093 3.0625 8.7020 25 1 -0.3633 0.3675 0.9598 26 1 -0.3634 0.6473 -0.7980 27 1 -0.3633 -1.0149 -0.1615 28 1 4.0684 -0.6589 -0.7357 29 1 3.4611 -2.1907 -1.4395 30 1 2.3539 -2.8220 0.6099 31 1 3.8332 -2.0225 1.2374 32 1 0.3391 -2.3974 0.3345 33 1 1.1135 -3.3513 1.6223 34 1 -1.3111 -3.7959 1.5758 35 1 -0.8703 -2.9541 3.0809 36 1 -2.7587 -1.9481 2.0193 37 1 0.6131 -2.1903 3.8945 38 1 2.3222 -1.9703 3.4487 39 1 2.1129 -0.9540 5.8619 40 1 3.0336 0.0573 8.9064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331176811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:37 Heat of formation + Delta-G solvation = -131.113994 kcal Electronic energy + Delta-G solvation = -22540.495925 eV Core-core repulsion = 19162.224753 eV Total energy + Delta-G solvation = -3378.271172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41788 -39.82559 -38.13687 -36.59266 -35.79183 -33.24540 -32.36243 -32.02924 -30.57515 -28.04801 -26.40842 -25.68172 -23.63327 -22.21502 -21.53939 -20.37200 -19.71668 -18.32535 -17.83349 -17.64651 -17.15067 -16.59645 -16.45169 -15.99314 -15.73714 -15.41418 -15.38447 -14.97008 -14.39234 -14.09028 -13.78690 -13.45441 -13.40628 -13.36620 -13.08847 -12.93438 -12.67634 -12.58638 -12.38023 -12.13436 -12.11894 -11.87156 -11.63974 -11.47308 -11.37767 -10.68825 -10.56518 -10.25721 -9.96284 -9.04456 -8.44446 -5.92129 1.36515 1.41357 1.55285 2.11859 2.29084 2.67498 2.97503 3.22508 3.37807 3.52059 3.66143 3.82304 4.07085 4.13843 4.21837 4.23689 4.30550 4.41944 4.47171 4.57798 4.62909 4.67641 4.70864 4.74885 4.77158 4.88182 4.96008 5.06315 5.07542 5.30240 5.43207 5.72813 5.94064 5.95445 6.13413 6.23447 6.65352 7.11190 7.17524 7.62022 8.19407 8.73392 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.005054 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.623110 B = 5538.589340 C = 5950.871419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.083 3.917 3 H 0.049 0.951 4 O -0.391 6.391 5 C 0.047 3.953 6 C -0.188 4.188 7 C 0.064 3.936 8 H 0.061 0.939 9 N -0.503 5.503 10 C 0.044 3.956 11 C 0.079 3.921 12 O -0.577 6.577 13 C 0.055 3.945 14 C 0.444 3.556 15 O -0.609 6.609 16 N -0.579 5.579 17 C -0.327 4.327 18 H 0.075 0.925 19 C -0.013 4.013 20 N -0.923 5.923 21 Si 0.989 3.011 22 H -0.276 1.276 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.385 0.615 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.394 0.606 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 -10.811 -12.295 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.025 3.975 3 H 0.067 0.933 4 O -0.311 6.311 5 C -0.030 4.030 6 C -0.227 4.227 7 C -0.046 4.046 8 H 0.080 0.920 9 N -0.226 5.226 10 C -0.083 4.083 11 C 0.001 3.999 12 O -0.383 6.383 13 C -0.076 4.076 14 C 0.231 3.769 15 O -0.494 6.494 16 N -0.218 5.218 17 C -0.457 4.457 18 H 0.093 0.907 19 C -0.213 4.213 20 N -0.564 5.564 21 Si 0.813 3.187 22 H -0.200 1.200 23 H -0.196 1.196 24 H -0.197 1.197 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.233 0.767 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.228 0.772 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.715 -9.576 -12.977 16.218 hybrid contribution 0.580 -0.107 1.554 1.662 sum -1.135 -9.682 -11.423 15.017 Atomic orbital electron populations 1.21633 0.92008 1.02637 1.01008 1.22673 0.96657 0.94277 0.83928 0.93268 1.88939 1.40562 1.68025 1.33556 1.23584 0.87226 0.96961 0.95200 1.23939 1.01353 0.99876 0.97552 1.22937 0.90771 0.96235 0.94657 0.92043 1.61538 1.32571 1.28921 0.99572 1.22591 0.94840 0.90440 1.00430 1.22303 0.89213 0.90003 0.98375 1.86623 1.24240 1.47283 1.80153 1.21797 1.01561 0.94153 0.90096 1.20840 0.81947 0.91698 0.82388 1.90504 1.52343 1.38307 1.68251 1.41942 1.57556 1.10257 1.12030 1.19640 1.41417 0.88359 0.96261 0.90650 1.25961 0.96262 1.02028 0.97017 1.69672 1.43399 1.28912 1.14430 0.84922 0.78251 0.77582 0.77897 1.20034 1.19617 1.19675 0.91733 0.94380 0.90718 0.92108 0.86581 0.87888 0.89304 0.89164 0.90907 0.90725 0.94170 0.76690 0.87376 0.91348 0.77203 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.85 7.99 71.98 0.58 -3.27 16 2 C 0.08 2.69 3.83 30.97 0.12 2.81 16 3 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 4 O -0.39 -11.36 11.22 -148.98 -1.67 -13.03 16 5 C 0.05 1.02 7.71 72.67 0.56 1.58 16 6 C -0.19 -4.21 6.28 31.90 0.20 -4.01 16 7 C 0.06 2.01 2.56 45.91 0.12 2.12 16 8 H 0.06 2.35 7.20 -2.39 -0.02 2.33 16 9 N -0.50 -15.83 2.32 -869.72 -2.02 -17.85 16 10 C 0.04 1.01 2.98 86.30 0.26 1.27 16 11 C 0.08 1.67 7.17 71.98 0.52 2.18 16 12 O -0.58 -14.70 12.43 -148.98 -1.85 -16.55 16 13 C 0.06 1.86 5.25 85.56 0.45 2.31 16 14 C 0.44 21.15 7.25 87.66 0.64 21.78 16 15 O -0.61 -34.12 15.47 -3.05 -0.05 -34.17 16 16 N -0.58 -29.75 5.29 -306.98 -1.62 -31.37 16 17 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 20 N -0.92 -49.90 13.05 21.66 0.28 -49.62 16 21 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H 0.06 2.59 7.52 -2.39 -0.02 2.57 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 2.32 4.61 -2.39 -0.01 2.31 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.10 1.96 5.00 -2.39 -0.01 1.95 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 2.19 5.35 -2.39 -0.01 2.17 16 33 H 0.07 1.32 6.68 -2.39 -0.02 1.30 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 0.87 6.47 -2.39 -0.02 0.86 16 36 H 0.39 6.56 9.12 -74.06 -0.68 5.89 16 37 H 0.11 3.22 6.19 -2.39 -0.01 3.21 16 38 H 0.07 2.04 7.90 -2.39 -0.02 2.02 16 39 H 0.39 19.19 7.90 -92.71 -0.73 18.46 16 40 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -71.20 315.11 -0.52 -71.72 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.33 Total: 36.78 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 4.71 Total: 8.61 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -3.36 Total: -98.85 kcal Atomic # 8 Polarization: -60.18 SS G_CDS: -3.57 Total: -63.75 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.20 -0.52 -71.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331176811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.394 kcal (2) G-P(sol) polarization free energy of solvation -71.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds