Wall clock time and date at job start Mon Mar 30 2020 04:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.86924 * 2 1 4 4 O 1.43741 * 109.87619 * 238.83949 * 2 1 3 5 5 C 1.44377 * 106.97552 * 267.09015 * 4 2 1 6 6 C 1.54992 * 103.49243 * 319.94032 * 5 4 2 7 7 C 1.54096 * 109.87498 * 121.01047 * 2 1 3 8 8 H 1.08999 * 110.49063 * 358.58248 * 7 2 1 9 9 N 1.46907 * 110.48514 * 236.07036 * 7 2 1 10 10 C 1.46897 * 110.99831 * 178.22298 * 9 7 2 11 11 C 1.53002 * 109.47283 * 286.13793 * 10 9 7 12 12 O 1.42904 * 109.47001 * 68.21730 * 11 10 9 13 13 C 1.46903 * 110.99674 * 302.17084 * 9 7 2 14 14 C 1.50703 * 109.47017 * 170.00112 * 13 9 7 15 15 O 1.21299 * 119.99985 * 0.02562 * 14 13 9 16 16 N 1.34774 * 120.00215 * 180.02562 * 14 13 9 17 17 C 1.37098 * 119.99910 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00258 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99727 * 180.02562 * 17 16 14 20 20 N 1.31409 * 119.99927 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00076 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47221 * 90.00243 * 21 19 17 23 23 H 1.48505 * 109.46794 * 210.00175 * 21 19 17 24 24 H 1.48499 * 109.47125 * 329.99748 * 21 19 17 25 25 H 1.08998 * 109.47367 * 298.99547 * 1 2 3 26 26 H 1.09004 * 109.46838 * 58.98865 * 1 2 3 27 27 H 1.08995 * 109.47326 * 178.98622 * 1 2 3 28 28 H 1.08994 * 110.61880 * 78.44374 * 5 4 2 29 29 H 1.09005 * 110.62073 * 201.28289 * 5 4 2 30 30 H 1.08998 * 110.91067 * 278.82965 * 6 5 4 31 31 H 1.09004 * 110.90986 * 155.22112 * 6 5 4 32 32 H 1.08999 * 109.47170 * 166.13605 * 10 9 7 33 33 H 1.08999 * 109.47561 * 46.14022 * 10 9 7 34 34 H 1.08996 * 109.47140 * 188.22264 * 11 10 9 35 35 H 1.09006 * 109.46699 * 308.22148 * 11 10 9 36 36 H 0.96701 * 113.99462 * 180.02562 * 12 11 10 37 37 H 1.08996 * 109.47343 * 290.00447 * 13 9 7 38 38 H 1.09002 * 109.47027 * 50.00745 * 13 9 7 39 39 H 0.96996 * 119.99636 * 0.02562 * 16 14 13 40 40 H 0.96998 * 120.00347 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0187 -0.6995 -1.1568 5 6 2.2280 -2.0724 -0.7620 6 6 2.8324 -1.9516 0.6601 7 6 2.0539 -0.7466 1.2421 8 1 1.2237 -1.0886 1.8600 9 7 2.9511 0.1175 2.0209 10 6 3.4241 -0.5689 3.2304 11 6 2.2891 -0.6388 4.2541 12 8 1.2689 -1.5173 3.7749 13 6 4.0800 0.5786 1.2018 14 6 4.8380 1.6469 1.9469 15 8 4.4739 1.9900 3.0519 16 7 5.9204 2.2210 1.3856 17 6 6.6097 3.1933 2.0634 18 1 6.2855 3.4988 3.0472 19 6 7.7253 3.7855 1.4844 20 7 8.3863 4.7171 2.1342 21 14 8.2856 3.2576 -0.2175 22 1 7.6159 4.0984 -1.2421 23 1 9.7575 3.4221 -0.3272 24 1 7.9291 1.8328 -0.4362 25 1 -0.3634 0.4981 0.8988 26 1 -0.3633 0.5295 -0.8808 27 1 -0.3634 -1.0274 -0.0182 28 1 1.2813 -2.6117 -0.7322 29 1 2.9273 -2.5640 -1.4384 30 1 3.9002 -1.7383 0.6122 31 1 2.6431 -2.8542 1.2412 32 1 4.2635 -0.0188 3.6556 33 1 3.7443 -1.5787 2.9735 34 1 2.6766 -1.0143 5.2011 35 1 1.8712 0.3571 4.4017 36 1 0.5159 -1.6095 4.3745 37 1 4.7443 -0.2601 0.9935 38 1 3.7050 0.9868 0.2632 39 1 6.2114 1.9469 0.5019 40 1 9.1653 5.1303 1.7303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331176812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:40 Heat of formation + Delta-G solvation = -111.587031 kcal Electronic energy + Delta-G solvation = -22426.246309 eV Core-core repulsion = 19048.821890 eV Total energy + Delta-G solvation = -3377.424419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.30017 -38.36940 -37.14320 -35.42085 -33.87930 -31.66778 -31.43277 -30.88009 -29.43495 -26.99817 -25.08937 -23.86640 -22.46892 -21.11969 -20.16535 -19.16071 -18.18050 -17.47898 -16.95362 -16.06665 -15.87571 -15.30313 -14.88450 -14.71845 -14.40612 -14.01623 -13.62732 -13.55104 -13.30794 -13.01314 -12.79567 -12.56249 -12.23765 -12.04294 -11.92542 -11.69428 -11.52057 -11.30675 -11.11468 -11.07713 -10.71939 -10.57631 -10.38082 -9.96518 -9.75040 -9.62077 -9.52194 -8.52504 -8.16399 -7.92318 -6.30221 -3.81363 3.05015 3.09724 3.17112 3.74290 3.83655 3.99976 4.12040 4.35888 4.61496 4.79562 4.90263 4.98945 5.12458 5.20571 5.24961 5.37740 5.42168 5.49740 5.56089 5.58532 5.66302 5.71376 5.74978 5.81692 5.87810 5.99479 6.04181 6.13945 6.19328 6.23697 6.38568 6.94022 7.21914 7.35604 7.59925 7.65523 8.15514 8.61463 8.96130 9.44035 9.84702 10.82841 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.005563 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.552955 B = 5031.941389 C = 5868.016295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.068 3.932 3 H 0.103 0.897 4 O -0.375 6.375 5 C 0.050 3.950 6 C -0.192 4.192 7 C 0.054 3.946 8 H 0.128 0.872 9 N -0.500 5.500 10 C 0.055 3.945 11 C 0.084 3.916 12 O -0.575 6.575 13 C 0.033 3.967 14 C 0.453 3.547 15 O -0.562 6.562 16 N -0.591 5.591 17 C -0.304 4.304 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.882 5.882 21 Si 0.878 3.122 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.269 1.269 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.371 0.629 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.371 0.629 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.137 -14.694 -3.357 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.010 3.990 3 H 0.121 0.879 4 O -0.294 6.294 5 C -0.027 4.027 6 C -0.231 4.231 7 C -0.055 4.055 8 H 0.145 0.855 9 N -0.223 5.223 10 C -0.072 4.072 11 C 0.006 3.994 12 O -0.381 6.381 13 C -0.098 4.098 14 C 0.239 3.761 15 O -0.444 6.444 16 N -0.230 5.230 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.522 5.522 21 Si 0.704 3.296 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.217 0.783 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.203 0.797 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.005 -13.821 -3.142 19.236 hybrid contribution 0.764 -1.046 -0.965 1.615 sum -12.240 -14.866 -4.108 19.690 Atomic orbital electron populations 1.22178 0.95395 1.01959 1.02449 1.22931 0.93992 0.97687 0.84389 0.87890 1.88911 1.86154 1.20663 1.33663 1.23416 0.99432 0.84694 0.95167 1.23806 1.01582 1.00671 0.97050 1.23592 0.97179 0.89985 0.94740 0.85460 1.61796 1.16879 1.37915 1.05669 1.22289 0.97418 0.96782 0.90723 1.22227 0.88513 0.93211 0.95419 1.86437 1.33232 1.68836 1.49584 1.22018 0.92914 0.97424 0.97475 1.19662 0.82749 0.85777 0.87941 1.90525 1.68263 1.65055 1.20565 1.42226 1.26403 1.36573 1.17791 1.19420 1.07789 1.12632 1.03429 0.86258 1.25025 0.96433 0.96401 0.98224 1.69618 1.19305 1.25408 1.37853 0.86694 0.79340 0.78954 0.84571 1.19531 1.20202 1.19502 0.91218 0.92191 0.92734 0.92460 0.89455 0.90433 0.90214 0.87309 0.94801 0.93647 0.92115 0.78281 0.93192 0.88719 0.79684 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.30 37.16 0.35 -1.47 16 2 C 0.07 0.91 3.05 -26.16 -0.08 0.83 16 3 H 0.10 1.55 6.47 -51.93 -0.34 1.22 16 4 O -0.37 -5.25 11.19 -35.23 -0.39 -5.65 16 5 C 0.05 0.56 7.66 38.21 0.29 0.86 16 6 C -0.19 -2.32 5.36 -24.72 -0.13 -2.46 16 7 C 0.05 0.73 2.52 -66.18 -0.17 0.56 16 8 H 0.13 1.69 4.88 -51.93 -0.25 1.44 16 9 N -0.50 -8.08 4.18 -226.25 -0.94 -9.02 16 10 C 0.06 0.87 4.95 -3.82 -0.02 0.85 16 11 C 0.08 1.09 7.33 37.16 0.27 1.36 16 12 O -0.58 -6.33 10.76 -35.23 -0.38 -6.71 16 13 C 0.03 0.58 4.62 -4.97 -0.02 0.55 16 14 C 0.45 10.29 7.32 -10.98 -0.08 10.21 16 15 O -0.56 -14.61 14.08 5.54 0.08 -14.53 16 16 N -0.59 -14.20 5.09 -10.96 -0.06 -14.26 16 17 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 18 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 19 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 20 N -0.88 -25.82 13.96 55.50 0.77 -25.04 16 21 Si 0.88 19.65 27.74 -169.99 -4.71 14.94 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 28 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.01 5.80 -51.93 -0.30 0.71 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.11 2.03 5.82 -51.93 -0.30 1.72 16 33 H 0.03 0.49 7.03 -51.93 -0.37 0.13 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.37 2.45 9.12 45.56 0.42 2.87 16 37 H 0.05 0.81 6.30 -51.93 -0.33 0.49 16 38 H 0.09 1.59 6.04 -51.93 -0.31 1.28 16 39 H 0.37 7.97 5.76 -40.82 -0.24 7.74 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -32.38 313.48 -5.70 -38.08 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -4.95 Total: 13.86 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 0.16 Total: 3.61 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.23 Total: -48.32 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.70 Total: -26.89 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.38 -5.70 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331176812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.506 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds