Wall clock time and date at job start Mon Mar 30 2020 04:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.86924 * 2 1 4 4 O 1.43741 * 109.87619 * 238.83949 * 2 1 3 5 5 C 1.44377 * 106.97552 * 267.09015 * 4 2 1 6 6 C 1.54992 * 103.49243 * 319.94032 * 5 4 2 7 7 C 1.54096 * 109.87498 * 121.01047 * 2 1 3 8 8 H 1.08999 * 110.49063 * 358.58248 * 7 2 1 9 9 N 1.46907 * 110.48514 * 236.07036 * 7 2 1 10 10 C 1.46897 * 110.99831 * 178.22298 * 9 7 2 11 11 C 1.53002 * 109.47283 * 286.13793 * 10 9 7 12 12 O 1.42904 * 109.47001 * 68.21730 * 11 10 9 13 13 C 1.46903 * 110.99674 * 302.17084 * 9 7 2 14 14 C 1.50703 * 109.47017 * 170.00112 * 13 9 7 15 15 O 1.21299 * 119.99985 * 0.02562 * 14 13 9 16 16 N 1.34774 * 120.00215 * 180.02562 * 14 13 9 17 17 C 1.37098 * 119.99910 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00258 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99727 * 180.02562 * 17 16 14 20 20 N 1.31409 * 119.99927 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00076 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47221 * 90.00243 * 21 19 17 23 23 H 1.48505 * 109.46794 * 210.00175 * 21 19 17 24 24 H 1.48499 * 109.47125 * 329.99748 * 21 19 17 25 25 H 1.08998 * 109.47367 * 298.99547 * 1 2 3 26 26 H 1.09004 * 109.46838 * 58.98865 * 1 2 3 27 27 H 1.08995 * 109.47326 * 178.98622 * 1 2 3 28 28 H 1.08994 * 110.61880 * 78.44374 * 5 4 2 29 29 H 1.09005 * 110.62073 * 201.28289 * 5 4 2 30 30 H 1.08998 * 110.91067 * 278.82965 * 6 5 4 31 31 H 1.09004 * 110.90986 * 155.22112 * 6 5 4 32 32 H 1.08999 * 109.47170 * 166.13605 * 10 9 7 33 33 H 1.08999 * 109.47561 * 46.14022 * 10 9 7 34 34 H 1.08996 * 109.47140 * 188.22264 * 11 10 9 35 35 H 1.09006 * 109.46699 * 308.22148 * 11 10 9 36 36 H 0.96701 * 113.99462 * 180.02562 * 12 11 10 37 37 H 1.08996 * 109.47343 * 290.00447 * 13 9 7 38 38 H 1.09002 * 109.47027 * 50.00745 * 13 9 7 39 39 H 0.96996 * 119.99636 * 0.02562 * 16 14 13 40 40 H 0.96998 * 120.00347 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0187 -0.6995 -1.1568 5 6 2.2280 -2.0724 -0.7620 6 6 2.8324 -1.9516 0.6601 7 6 2.0539 -0.7466 1.2421 8 1 1.2237 -1.0886 1.8600 9 7 2.9511 0.1175 2.0209 10 6 3.4241 -0.5689 3.2304 11 6 2.2891 -0.6388 4.2541 12 8 1.2689 -1.5173 3.7749 13 6 4.0800 0.5786 1.2018 14 6 4.8380 1.6469 1.9469 15 8 4.4739 1.9900 3.0519 16 7 5.9204 2.2210 1.3856 17 6 6.6097 3.1933 2.0634 18 1 6.2855 3.4988 3.0472 19 6 7.7253 3.7855 1.4844 20 7 8.3863 4.7171 2.1342 21 14 8.2856 3.2576 -0.2175 22 1 7.6159 4.0984 -1.2421 23 1 9.7575 3.4221 -0.3272 24 1 7.9291 1.8328 -0.4362 25 1 -0.3634 0.4981 0.8988 26 1 -0.3633 0.5295 -0.8808 27 1 -0.3634 -1.0274 -0.0182 28 1 1.2813 -2.6117 -0.7322 29 1 2.9273 -2.5640 -1.4384 30 1 3.9002 -1.7383 0.6122 31 1 2.6431 -2.8542 1.2412 32 1 4.2635 -0.0188 3.6556 33 1 3.7443 -1.5787 2.9735 34 1 2.6766 -1.0143 5.2011 35 1 1.8712 0.3571 4.4017 36 1 0.5159 -1.6095 4.3745 37 1 4.7443 -0.2601 0.9935 38 1 3.7050 0.9868 0.2632 39 1 6.2114 1.9469 0.5019 40 1 9.1653 5.1303 1.7303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331176812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:40 Heat of formation + Delta-G solvation = -139.663694 kcal Electronic energy + Delta-G solvation = -22427.463805 eV Core-core repulsion = 19048.821890 eV Total energy + Delta-G solvation = -3378.641914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.45883 -40.04219 -38.24859 -36.61482 -35.84546 -33.75820 -32.41050 -31.87455 -30.73820 -28.35379 -26.51348 -25.38038 -23.48535 -22.14216 -21.67398 -20.92848 -19.92182 -18.47409 -18.23669 -17.32060 -17.18577 -16.71433 -16.37450 -16.13400 -15.64067 -15.32208 -15.23272 -14.74130 -14.61245 -14.34727 -14.12182 -13.91888 -13.86174 -13.26873 -13.05048 -13.00750 -12.73776 -12.59269 -12.42639 -12.33745 -12.08346 -11.98903 -11.76414 -11.50640 -11.41078 -10.71296 -10.58287 -10.36398 -10.23669 -9.19825 -8.41956 -6.01941 1.29091 1.33812 1.42002 1.92898 2.21381 2.53800 3.02015 3.11215 3.15851 3.45127 3.76290 3.82257 3.95679 4.10431 4.21761 4.25586 4.31184 4.35527 4.36581 4.44034 4.52244 4.60937 4.72423 4.80189 4.87762 4.93992 5.02212 5.04609 5.16886 5.27751 5.31585 5.52286 5.87805 5.97330 6.05422 6.20191 6.58848 6.87343 6.96240 7.38791 7.94411 8.75438 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.005563 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.552955 B = 5031.941389 C = 5868.016295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.066 3.934 3 H 0.081 0.919 4 O -0.393 6.393 5 C 0.049 3.951 6 C -0.187 4.187 7 C 0.057 3.943 8 H 0.134 0.866 9 N -0.515 5.515 10 C 0.055 3.945 11 C 0.095 3.905 12 O -0.576 6.576 13 C 0.048 3.952 14 C 0.454 3.546 15 O -0.599 6.599 16 N -0.593 5.593 17 C -0.325 4.325 18 H 0.060 0.940 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.959 3.041 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.236 1.236 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.393 0.607 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.387 0.613 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.140 -17.406 -5.708 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.008 3.992 3 H 0.099 0.901 4 O -0.312 6.312 5 C -0.027 4.027 6 C -0.226 4.226 7 C -0.051 4.051 8 H 0.152 0.848 9 N -0.239 5.239 10 C -0.073 4.073 11 C 0.017 3.983 12 O -0.385 6.385 13 C -0.083 4.083 14 C 0.242 3.758 15 O -0.483 6.483 16 N -0.235 5.235 17 C -0.454 4.454 18 H 0.078 0.922 19 C -0.210 4.210 20 N -0.573 5.573 21 Si 0.779 3.221 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.159 1.159 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.243 0.757 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.222 0.778 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.049 -16.566 -5.486 22.403 hybrid contribution 0.970 -0.212 -0.099 0.998 sum -13.079 -16.778 -5.585 21.994 Atomic orbital electron populations 1.22120 0.93694 1.02937 1.02653 1.22903 0.95337 0.96574 0.84358 0.90083 1.88893 1.86375 1.22076 1.33866 1.23596 1.00718 0.83665 0.94737 1.23760 1.00705 1.00352 0.97809 1.23619 0.96813 0.90109 0.94542 0.84824 1.61781 1.16538 1.39453 1.06099 1.22198 0.97464 0.96580 0.91044 1.21947 0.88330 0.92866 0.95168 1.86351 1.33715 1.67935 1.50476 1.21850 0.93308 0.96118 0.96997 1.20709 0.81935 0.85651 0.87511 1.90511 1.69022 1.66215 1.22558 1.42067 1.26805 1.36226 1.18362 1.19006 1.09387 1.14868 1.02130 0.92200 1.26019 0.95702 0.95780 1.03533 1.69787 1.20075 1.26897 1.40556 0.85450 0.78739 0.80445 0.77470 1.18295 1.19763 1.15949 0.91091 0.91966 0.91322 0.90662 0.87939 0.91375 0.88904 0.91038 0.93492 0.92053 0.93979 0.75712 0.91092 0.87465 0.77803 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.30 71.98 0.67 -2.47 16 2 C 0.07 1.65 3.05 30.97 0.09 1.74 16 3 H 0.08 2.36 6.47 -2.39 -0.02 2.35 16 4 O -0.39 -9.91 11.19 -148.98 -1.67 -11.57 16 5 C 0.05 0.93 7.66 72.66 0.56 1.49 16 6 C -0.19 -3.93 5.36 31.90 0.17 -3.76 16 7 C 0.06 1.41 2.52 45.90 0.12 1.53 16 8 H 0.13 3.16 4.88 -2.39 -0.01 3.15 16 9 N -0.52 -16.17 4.18 -869.71 -3.63 -19.80 16 10 C 0.05 1.68 4.95 86.30 0.43 2.11 16 11 C 0.09 2.37 7.33 71.98 0.53 2.90 16 12 O -0.58 -11.16 10.76 -148.98 -1.60 -12.77 16 13 C 0.05 1.64 4.62 85.56 0.40 2.04 16 14 C 0.45 21.01 7.32 87.66 0.64 21.65 16 15 O -0.60 -32.65 14.08 -3.09 -0.04 -32.70 16 16 N -0.59 -28.76 5.09 -306.98 -1.56 -30.32 16 17 C -0.32 -19.16 10.16 84.04 0.85 -18.31 16 18 H 0.06 4.16 7.39 -2.91 -0.02 4.14 16 19 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 20 N -0.93 -56.47 13.96 21.66 0.30 -56.17 16 21 Si 0.96 39.81 27.74 68.60 1.90 41.71 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.24 -8.45 6.52 99.48 0.65 -7.80 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.18 8.11 -2.39 -0.02 1.16 16 28 H 0.08 1.17 8.11 -2.39 -0.02 1.15 16 29 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.07 1.57 5.80 -2.39 -0.01 1.56 16 31 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.07 2.74 5.82 -2.39 -0.01 2.73 16 33 H 0.05 1.29 7.03 -2.39 -0.02 1.28 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.39 4.02 9.12 -74.06 -0.68 3.34 16 37 H 0.07 2.15 6.30 -2.39 -0.02 2.14 16 38 H 0.11 3.43 6.04 -2.39 -0.01 3.42 16 39 H 0.39 16.00 5.76 -92.71 -0.53 15.47 16 40 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -74.14 313.48 -1.58 -75.72 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.20 Total: 37.14 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 4.92 Total: 8.75 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -4.89 Total: -106.29 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -3.31 Total: -57.03 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.90 Total: 41.71 kcal Total: -74.14 -1.58 -75.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331176812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.941 kcal (2) G-P(sol) polarization free energy of solvation -74.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds