Wall clock time and date at job start Mon Mar 30 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00265 * 2 1 4 4 C 1.52998 * 109.47055 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47121 * 65.06285 * 4 3 2 6 6 C 1.46958 * 110.99790 * 75.77193 * 5 4 3 7 7 C 1.53053 * 109.35768 * 183.19109 * 6 5 4 8 8 N 1.46954 * 109.36690 * 301.59697 * 7 6 5 9 9 C 1.46902 * 111.00242 * 183.18997 * 8 7 6 10 10 C 1.53001 * 109.46687 * 75.78131 * 9 8 7 11 11 O 1.42905 * 109.47365 * 65.05640 * 10 9 8 12 12 C 1.42895 * 114.00138 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47431 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99701 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00444 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00013 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00238 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47185 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46912 * 119.99909 * 17 15 13 20 20 H 1.48498 * 109.47040 * 239.99624 * 17 15 13 21 21 C 1.46962 * 110.87988 * 59.32349 * 8 7 6 22 22 C 1.46954 * 110.99813 * 199.57652 * 5 4 3 23 23 H 1.08999 * 109.47555 * 59.99536 * 1 2 3 24 24 H 1.09000 * 109.47467 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47208 * 299.99247 * 1 2 3 26 26 H 1.09005 * 109.46509 * 60.00842 * 3 2 1 27 27 H 1.08997 * 109.47297 * 300.00923 * 3 2 1 28 28 H 1.08998 * 109.47088 * 305.05665 * 4 3 2 29 29 H 1.09000 * 109.46742 * 185.05687 * 4 3 2 30 30 H 1.08997 * 109.48792 * 63.22905 * 6 5 4 31 31 H 1.08994 * 109.48942 * 303.15478 * 6 5 4 32 32 H 1.09006 * 109.48802 * 181.63606 * 7 6 5 33 33 H 1.08999 * 109.49028 * 61.56938 * 7 6 5 34 34 H 1.08997 * 109.47291 * 315.78341 * 9 8 7 35 35 H 1.09003 * 109.47150 * 195.77925 * 9 8 7 36 36 H 1.08995 * 109.47249 * 305.05481 * 10 9 8 37 37 H 1.09003 * 109.46773 * 185.05592 * 10 9 8 38 38 H 1.08998 * 109.47305 * 300.00106 * 12 11 10 39 39 H 1.09003 * 109.46994 * 59.99705 * 12 11 10 40 40 H 0.97001 * 120.00331 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.48253 * 60.64661 * 21 8 7 42 42 H 1.08994 * 109.49264 * 180.71196 * 21 8 7 43 43 H 1.08999 * 109.48972 * 296.77432 * 22 5 4 44 44 H 1.08994 * 109.49119 * 56.84269 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9769 0.5639 -1.2568 6 6 3.9095 1.5216 -2.3695 7 6 4.3002 0.8162 -3.6703 8 7 5.6551 0.2630 -3.5368 9 6 6.0965 -0.3577 -4.7929 10 6 6.4804 0.7340 -5.7938 11 8 7.6179 1.4486 -5.3063 12 6 8.0610 2.4961 -6.1714 13 6 9.2589 3.1779 -5.5624 14 1 9.6438 2.8443 -4.6099 15 6 9.8636 4.2274 -6.2208 16 7 9.3953 4.6333 -7.3809 17 14 11.3482 5.0730 -5.4654 18 1 11.6745 4.4327 -4.1659 19 1 12.5086 4.9496 -6.3839 20 1 11.0412 6.5092 -5.2459 21 6 5.7225 -0.6947 -2.4241 22 6 5.3317 0.0106 -1.1231 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5137 0.8901 26 1 1.6887 1.8462 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 3.8513 0.5672 0.8403 29 1 3.9785 2.1763 0.0899 30 1 4.5976 2.3459 -2.1819 31 1 2.8939 1.9076 -2.4560 32 1 4.2791 1.5317 -4.4925 33 1 3.5960 0.0091 -3.8720 34 1 5.2868 -0.9598 -5.2049 35 1 6.9605 -0.9938 -4.5999 36 1 5.6449 1.4227 -5.9185 37 1 6.7219 0.2780 -6.7539 38 1 8.3353 2.0763 -7.1392 39 1 7.2582 3.2214 -6.3045 40 1 9.8205 5.3719 -7.8440 41 1 5.0344 -1.5190 -2.6117 42 1 6.7381 -1.0808 -2.3375 43 1 6.0359 0.8178 -0.9214 44 1 5.3529 -0.7048 -0.3011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338900087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:43 Heat of formation + Delta-G solvation = -78.343619 kcal Electronic energy + Delta-G solvation = -21512.847312 eV Core-core repulsion = 18272.697530 eV Total energy + Delta-G solvation = -3240.149782 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.39977 -37.94318 -36.69351 -35.16206 -32.66101 -31.10345 -30.67193 -28.82368 -26.95643 -26.34232 -24.88158 -23.69702 -22.24762 -21.83752 -21.08803 -19.65725 -16.80858 -16.62679 -16.33982 -15.79821 -15.56356 -15.39419 -14.88546 -14.83586 -14.46928 -14.38226 -14.16370 -13.90104 -13.54001 -12.98574 -12.76820 -12.31649 -12.06118 -12.01650 -11.76134 -11.62794 -11.39476 -11.19298 -11.10889 -10.90788 -10.78800 -10.72799 -10.45490 -10.26553 -9.91929 -9.81045 -9.00746 -8.73701 -8.34474 -8.07419 -7.96910 -6.05628 -4.06196 3.32114 3.38337 3.45512 3.61313 3.81670 4.07883 4.40132 4.80094 4.86458 4.92537 4.99892 5.11138 5.13195 5.19109 5.24310 5.30228 5.30861 5.38444 5.43714 5.48979 5.49863 5.57633 5.66359 5.70724 5.73679 5.90446 5.95612 5.99561 6.10477 6.15938 6.21760 6.36145 6.89593 6.99938 7.09399 7.18240 7.34589 7.35428 7.51243 7.86771 8.23800 8.70132 9.09572 9.58559 11.06184 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.025338 B = 0.003321 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.775953 B = 8428.280609 C = 8822.343302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.068 3.932 4 C 0.055 3.945 5 N -0.532 5.532 6 C 0.056 3.944 7 C 0.059 3.941 8 N -0.526 5.526 9 C 0.062 3.938 10 C 0.070 3.930 11 O -0.380 6.380 12 C 0.194 3.806 13 C -0.508 4.508 14 H 0.066 0.934 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.061 3.939 22 C 0.059 3.941 23 H 0.038 0.962 24 H 0.083 0.917 25 H 0.036 0.964 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.262 0.738 41 H 0.036 0.964 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.363 -9.167 13.117 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C -0.009 4.009 4 C -0.073 4.073 5 N -0.257 5.257 6 C -0.072 4.072 7 C -0.069 4.069 8 N -0.251 5.251 9 C -0.066 4.066 10 C -0.009 4.009 11 O -0.300 6.300 12 C 0.120 3.880 13 C -0.546 4.546 14 H 0.085 0.915 15 C -0.147 4.147 16 N -0.540 5.540 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.068 4.068 22 C -0.069 4.069 23 H 0.057 0.943 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.113 -9.244 13.154 22.762 hybrid contribution 0.337 0.931 -0.105 0.996 sum -15.776 -8.313 13.049 22.096 Atomic orbital electron populations 1.22707 0.81835 1.02495 0.99545 1.87990 1.18761 1.27395 1.95227 1.22552 0.93647 0.85026 0.99705 1.22107 0.93549 0.98640 0.93024 1.62126 1.24736 1.35031 1.03852 1.22202 1.00492 0.93818 0.90691 1.22149 0.88819 0.98730 0.97215 1.62017 1.23648 1.35046 1.04355 1.22123 0.99195 0.95612 0.89640 1.22215 0.90491 0.93584 0.94586 1.87934 1.44531 1.49398 1.48109 1.20161 0.94302 0.84278 0.89293 1.21106 1.12071 1.15031 1.06407 0.91536 1.24952 0.97919 0.96823 0.94970 1.69979 1.41300 1.27932 1.14837 0.86305 0.81946 0.79082 0.79306 1.19480 1.20905 1.20925 1.22126 1.00728 0.93398 0.90517 1.22157 0.88473 0.98769 0.97494 0.94310 0.89874 0.94566 0.93297 0.93286 0.90106 0.92877 0.93513 0.90828 0.90158 0.94545 0.94126 0.90291 0.94775 0.94458 0.98076 0.98000 0.92827 0.94545 0.90241 0.93682 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.17 10.65 -35.23 -0.38 -4.55 16 3 C 0.07 0.64 6.13 37.16 0.23 0.87 16 4 C 0.05 0.56 5.39 -3.82 -0.02 0.54 16 5 N -0.53 -6.60 4.59 -234.47 -1.08 -7.68 16 6 C 0.06 0.73 5.43 -3.76 -0.02 0.71 16 7 C 0.06 0.84 5.43 -3.77 -0.02 0.82 16 8 N -0.53 -8.35 4.59 -234.46 -1.08 -9.43 16 9 C 0.06 0.98 5.39 -3.82 -0.02 0.96 16 10 C 0.07 1.34 6.13 37.16 0.23 1.57 16 11 O -0.38 -9.51 10.27 -35.23 -0.36 -9.88 16 12 C 0.19 5.49 5.69 36.00 0.20 5.69 16 13 C -0.51 -15.34 9.43 -34.44 -0.32 -15.67 16 14 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 17 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.06 0.82 5.57 -3.76 -0.02 0.80 16 22 C 0.06 0.74 5.57 -3.77 -0.02 0.72 16 23 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.46 6.73 -51.93 -0.35 0.11 16 28 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16 29 H 0.05 0.52 8.00 -51.93 -0.42 0.10 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.84 6.71 -51.93 -0.35 0.49 16 32 H 0.08 1.19 6.72 -51.93 -0.35 0.84 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.55 8.00 -51.93 -0.42 0.13 16 35 H 0.08 1.24 7.84 -51.93 -0.41 0.83 16 36 H 0.03 0.65 6.74 -51.93 -0.35 0.30 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 1.04 8.00 -51.93 -0.42 0.63 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.83 8.00 -51.93 -0.42 0.41 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -33.30 351.12 -8.72 -42.02 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -8.07 Total: -6.15 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 1.23 Total: -0.15 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -1.42 Total: -43.84 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.74 Total: -14.42 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.30 -8.72 -42.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338900087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.322 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds