Wall clock time and date at job start Mon Mar 30 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00265 * 2 1 4 4 C 1.52998 * 109.47055 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47121 * 65.06285 * 4 3 2 6 6 C 1.46958 * 110.99790 * 75.77193 * 5 4 3 7 7 C 1.53053 * 109.35768 * 183.19109 * 6 5 4 8 8 N 1.46954 * 109.36690 * 301.59697 * 7 6 5 9 9 C 1.46902 * 111.00242 * 183.18997 * 8 7 6 10 10 C 1.53001 * 109.46687 * 75.78131 * 9 8 7 11 11 O 1.42905 * 109.47365 * 65.05640 * 10 9 8 12 12 C 1.42895 * 114.00138 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47431 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99701 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00444 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00013 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00238 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47185 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46912 * 119.99909 * 17 15 13 20 20 H 1.48498 * 109.47040 * 239.99624 * 17 15 13 21 21 C 1.46962 * 110.87988 * 59.32349 * 8 7 6 22 22 C 1.46954 * 110.99813 * 199.57652 * 5 4 3 23 23 H 1.08999 * 109.47555 * 59.99536 * 1 2 3 24 24 H 1.09000 * 109.47467 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47208 * 299.99247 * 1 2 3 26 26 H 1.09005 * 109.46509 * 60.00842 * 3 2 1 27 27 H 1.08997 * 109.47297 * 300.00923 * 3 2 1 28 28 H 1.08998 * 109.47088 * 305.05665 * 4 3 2 29 29 H 1.09000 * 109.46742 * 185.05687 * 4 3 2 30 30 H 1.08997 * 109.48792 * 63.22905 * 6 5 4 31 31 H 1.08994 * 109.48942 * 303.15478 * 6 5 4 32 32 H 1.09006 * 109.48802 * 181.63606 * 7 6 5 33 33 H 1.08999 * 109.49028 * 61.56938 * 7 6 5 34 34 H 1.08997 * 109.47291 * 315.78341 * 9 8 7 35 35 H 1.09003 * 109.47150 * 195.77925 * 9 8 7 36 36 H 1.08995 * 109.47249 * 305.05481 * 10 9 8 37 37 H 1.09003 * 109.46773 * 185.05592 * 10 9 8 38 38 H 1.08998 * 109.47305 * 300.00106 * 12 11 10 39 39 H 1.09003 * 109.46994 * 59.99705 * 12 11 10 40 40 H 0.97001 * 120.00331 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.48253 * 60.64661 * 21 8 7 42 42 H 1.08994 * 109.49264 * 180.71196 * 21 8 7 43 43 H 1.08999 * 109.48972 * 296.77432 * 22 5 4 44 44 H 1.08994 * 109.49119 * 56.84269 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9769 0.5639 -1.2568 6 6 3.9095 1.5216 -2.3695 7 6 4.3002 0.8162 -3.6703 8 7 5.6551 0.2630 -3.5368 9 6 6.0965 -0.3577 -4.7929 10 6 6.4804 0.7340 -5.7938 11 8 7.6179 1.4486 -5.3063 12 6 8.0610 2.4961 -6.1714 13 6 9.2589 3.1779 -5.5624 14 1 9.6438 2.8443 -4.6099 15 6 9.8636 4.2274 -6.2208 16 7 9.3953 4.6333 -7.3809 17 14 11.3482 5.0730 -5.4654 18 1 11.6745 4.4327 -4.1659 19 1 12.5086 4.9496 -6.3839 20 1 11.0412 6.5092 -5.2459 21 6 5.7225 -0.6947 -2.4241 22 6 5.3317 0.0106 -1.1231 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5137 0.8901 26 1 1.6887 1.8462 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 3.8513 0.5672 0.8403 29 1 3.9785 2.1763 0.0899 30 1 4.5976 2.3459 -2.1819 31 1 2.8939 1.9076 -2.4560 32 1 4.2791 1.5317 -4.4925 33 1 3.5960 0.0091 -3.8720 34 1 5.2868 -0.9598 -5.2049 35 1 6.9605 -0.9938 -4.5999 36 1 5.6449 1.4227 -5.9185 37 1 6.7219 0.2780 -6.7539 38 1 8.3353 2.0763 -7.1392 39 1 7.2582 3.2214 -6.3045 40 1 9.8205 5.3719 -7.8440 41 1 5.0344 -1.5190 -2.6117 42 1 6.7381 -1.0808 -2.3375 43 1 6.0359 0.8178 -0.9214 44 1 5.3529 -0.7048 -0.3011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338900087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:43 Heat of formation + Delta-G solvation = -103.800425 kcal Electronic energy + Delta-G solvation = -21513.951202 eV Core-core repulsion = 18272.697530 eV Total energy + Delta-G solvation = -3241.253672 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.45037 -38.88824 -38.29413 -36.39630 -34.87122 -32.20197 -31.75805 -30.17302 -28.81838 -27.18277 -25.98075 -24.76564 -24.46177 -22.81760 -22.34257 -20.73831 -18.61901 -17.77471 -17.47329 -17.33652 -16.80451 -16.53369 -16.22826 -15.89474 -15.80377 -15.75605 -15.52467 -15.05527 -14.84533 -14.60408 -13.75606 -13.69714 -13.50409 -13.09584 -12.92913 -12.81935 -12.72659 -12.63495 -12.56711 -12.33653 -12.23339 -12.08179 -11.97529 -11.53441 -11.44343 -11.21108 -10.85306 -10.50980 -10.16485 -9.34759 -9.13212 -8.31629 -6.43437 1.39227 1.40938 1.55897 2.35297 2.83601 2.92435 2.99520 3.01828 3.26255 3.88301 3.97736 4.07233 4.20060 4.24679 4.27850 4.37899 4.42448 4.44964 4.49220 4.54397 4.56379 4.59443 4.63948 4.65415 4.68436 4.82922 4.83637 4.88929 4.90513 4.93638 4.97364 5.03204 5.09338 5.20072 5.56182 5.96953 5.98812 6.00223 6.19762 6.22727 6.38643 6.58267 6.87982 7.28975 8.81100 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.025338 B = 0.003321 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.775953 B = 8428.280609 C = 8822.343302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.069 3.931 4 C 0.053 3.947 5 N -0.536 5.536 6 C 0.061 3.939 7 C 0.061 3.939 8 N -0.553 5.553 9 C 0.071 3.929 10 C 0.061 3.939 11 O -0.395 6.395 12 C 0.210 3.790 13 C -0.543 4.543 14 H 0.059 0.941 15 C 0.005 3.995 16 N -0.932 5.932 17 Si 0.983 3.017 18 H -0.265 1.265 19 H -0.270 1.270 20 H -0.271 1.271 21 C 0.063 3.937 22 C 0.062 3.938 23 H 0.042 0.958 24 H 0.090 0.910 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.047 0.953 38 H -0.016 1.016 39 H -0.020 1.020 40 H 0.270 0.730 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.027 0.973 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.607 -9.383 14.366 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.008 4.008 4 C -0.075 4.075 5 N -0.261 5.261 6 C -0.067 4.067 7 C -0.067 4.067 8 N -0.279 5.279 9 C -0.057 4.057 10 C -0.017 4.017 11 O -0.315 6.315 12 C 0.135 3.865 13 C -0.581 4.581 14 H 0.077 0.923 15 C -0.194 4.194 16 N -0.572 5.572 17 Si 0.806 3.194 18 H -0.189 1.189 19 H -0.195 1.195 20 H -0.196 1.196 21 C -0.065 4.065 22 C -0.066 4.066 23 H 0.060 0.940 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.001 0.999 39 H -0.002 1.002 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.046 0.954 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.386 -9.478 14.408 23.789 hybrid contribution 0.314 0.953 -0.511 1.126 sum -16.072 -8.525 13.898 22.894 Atomic orbital electron populations 1.22850 0.80358 1.03342 1.00401 1.87939 1.20497 1.28263 1.95434 1.22575 0.92819 0.84767 1.00614 1.22194 0.94385 0.98793 0.92107 1.62176 1.24364 1.34989 1.04586 1.22134 1.00766 0.93182 0.90590 1.22126 0.88356 0.98703 0.97494 1.61970 1.24749 1.36257 1.04907 1.22027 1.00222 0.94247 0.89166 1.22559 0.88596 0.94154 0.96369 1.87890 1.46752 1.48871 1.47960 1.19773 0.93322 0.84548 0.88886 1.21396 1.13455 1.16527 1.06702 0.92293 1.25972 1.01088 0.97038 0.95252 1.70081 1.42721 1.28358 1.15993 0.85136 0.77665 0.77995 0.78602 1.18912 1.19506 1.19634 1.22140 1.01063 0.93191 0.90062 1.22150 0.88284 0.98578 0.97615 0.93971 0.89134 0.93154 0.91320 0.93385 0.89533 0.92511 0.95646 0.89232 0.91395 0.93617 0.91152 0.90176 0.94714 0.93517 0.99874 1.00187 0.92073 0.93716 0.90156 0.95439 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -8.23 10.65 -148.98 -1.59 -9.82 16 3 C 0.07 1.18 6.13 71.98 0.44 1.62 16 4 C 0.05 1.01 5.39 86.30 0.46 1.48 16 5 N -0.54 -12.68 4.59 -895.73 -4.11 -16.79 16 6 C 0.06 1.57 5.43 86.31 0.47 2.04 16 7 C 0.06 1.71 5.43 86.31 0.47 2.18 16 8 N -0.55 -17.30 4.59 -895.69 -4.11 -21.42 16 9 C 0.07 2.18 5.39 86.30 0.46 2.64 16 10 C 0.06 2.36 6.13 71.98 0.44 2.80 16 11 O -0.40 -20.25 10.27 -148.98 -1.53 -21.78 16 12 C 0.21 12.27 5.69 71.24 0.41 12.68 16 13 C -0.54 -33.46 9.43 25.60 0.24 -33.22 16 14 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 15 C 0.00 0.27 5.46 84.65 0.46 0.73 16 16 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 17 Si 0.98 45.41 29.54 68.60 2.03 47.43 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 C 0.06 1.64 5.57 86.31 0.48 2.12 16 22 C 0.06 1.49 5.57 86.31 0.48 1.97 16 23 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 27 H 0.05 0.82 6.73 -2.39 -0.02 0.80 16 28 H 0.09 1.55 7.84 -2.39 -0.02 1.53 16 29 H 0.06 1.05 8.00 -2.39 -0.02 1.03 16 30 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.96 6.71 -2.39 -0.02 1.94 16 32 H 0.07 2.03 6.72 -2.38 -0.02 2.01 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.76 8.00 -2.39 -0.02 1.74 16 35 H 0.08 2.43 7.84 -2.39 -0.02 2.41 16 36 H 0.03 1.34 6.74 -2.39 -0.02 1.32 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 39 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 2.04 8.00 -2.39 -0.02 2.02 16 43 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.10 1.92 8.00 -2.39 -0.02 1.90 16 Total: -1.00 -71.27 351.12 -2.02 -73.29 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.94 Total: 7.34 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 6.07 Total: -1.34 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -7.94 Total: -95.12 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -3.12 Total: -31.60 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.27 -2.02 -73.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338900087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.511 kcal (2) G-P(sol) polarization free energy of solvation -71.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds