Wall clock time and date at job start Mon Mar 30 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00222 * 2 1 4 4 C 1.53002 * 109.47130 * 66.04953 * 3 2 1 5 5 O 1.42897 * 109.46933 * 64.99655 * 4 3 2 6 6 C 1.42900 * 113.99848 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47421 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99680 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00206 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99998 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99900 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47509 * 90.00016 * 11 9 7 13 13 H 1.48501 * 109.47083 * 210.00069 * 11 9 7 14 14 H 1.48508 * 109.47317 * 329.99635 * 11 9 7 15 15 C 1.46908 * 110.99572 * 236.04948 * 2 1 3 16 16 C 1.53002 * 109.46707 * 293.95240 * 15 2 1 17 17 N 1.46908 * 109.46707 * 179.97438 * 16 15 2 18 18 C 1.47024 * 110.99261 * 46.32476 * 17 16 15 19 19 C 1.53103 * 109.24985 * 182.34870 * 18 17 16 20 20 O 1.43012 * 109.29295 * 303.21723 * 19 18 17 21 21 C 1.43011 * 113.74271 * 58.65008 * 20 19 18 22 22 C 1.47018 * 110.99661 * 170.00016 * 17 16 15 23 23 H 1.08996 * 109.47534 * 183.94938 * 1 2 3 24 24 H 1.09000 * 109.46885 * 303.95662 * 1 2 3 25 25 H 1.09002 * 109.46865 * 63.94500 * 1 2 3 26 26 H 1.08999 * 109.46918 * 186.05037 * 3 2 1 27 27 H 1.09004 * 109.47045 * 306.04541 * 3 2 1 28 28 H 1.08993 * 109.46926 * 185.00199 * 4 3 2 29 29 H 1.09000 * 109.46565 * 304.99805 * 4 3 2 30 30 H 1.09001 * 109.47285 * 300.00416 * 6 5 4 31 31 H 1.09001 * 109.47288 * 59.99909 * 6 5 4 32 32 H 0.96999 * 119.99541 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.46566 * 173.95539 * 15 2 1 34 34 H 1.08999 * 109.47250 * 53.95285 * 15 2 1 35 35 H 1.09003 * 109.46906 * 60.00515 * 16 15 2 36 36 H 1.08999 * 109.47302 * 300.00013 * 16 15 2 37 37 H 1.08998 * 109.47369 * 62.43595 * 18 17 16 38 38 H 1.08998 * 109.54483 * 302.29802 * 18 17 16 39 39 H 1.09002 * 109.50635 * 183.25881 * 19 18 17 40 40 H 1.09003 * 109.50698 * 63.17493 * 19 18 17 41 41 H 1.08997 * 109.50806 * 61.26171 * 21 20 19 42 42 H 1.08997 * 109.50924 * 181.35636 * 21 20 19 43 43 H 1.08994 * 109.50209 * 57.67478 * 22 17 16 44 44 H 1.08997 * 109.50514 * 297.54292 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3183 5 8 2.2957 1.3974 2.3978 6 6 2.0216 1.9626 3.6814 7 6 2.7698 1.1932 4.7393 8 1 3.3921 0.3561 4.4595 9 6 2.6591 1.5574 6.0645 10 7 1.9001 2.5759 6.4053 11 14 3.5871 0.6041 7.3757 12 1 4.9257 1.2146 7.5773 13 1 2.8265 0.6470 8.6504 14 1 3.7469 -0.8072 6.9419 15 6 1.9954 -0.7660 -1.1377 16 6 1.6313 -2.2426 -0.9704 17 7 2.1572 -3.0085 -2.1085 18 6 3.5521 -2.6403 -2.3916 19 6 4.0403 -3.4169 -3.6175 20 8 3.8867 -4.8189 -3.3806 21 6 2.5401 -5.2118 -3.1027 22 6 2.0370 -4.4544 -1.8710 23 1 -0.3634 -1.0252 0.0708 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4514 -0.9233 26 1 3.0798 1.3443 -0.1083 27 1 1.5612 1.9273 -0.8310 28 1 1.9440 3.1010 1.2831 29 1 0.5533 2.0058 1.4691 30 1 2.3417 3.0044 3.6955 31 1 0.9514 1.9087 3.8810 32 1 1.8225 2.8322 7.3376 33 1 3.0797 -0.6611 -1.1757 34 1 1.5610 -0.3872 -2.0629 35 1 0.5470 -2.3474 -0.9324 36 1 2.0657 -2.6214 -0.0453 37 1 4.1749 -2.8880 -1.5321 38 1 3.6137 -1.5704 -2.5903 39 1 5.0914 -3.1909 -3.7966 40 1 3.4524 -3.1284 -4.4889 41 1 1.9079 -4.9755 -3.9586 42 1 2.5061 -6.2841 -2.9101 43 1 0.9926 -4.7077 -1.6893 44 1 2.6357 -4.7317 -1.0034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338966039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:42 Heat of formation + Delta-G solvation = -75.637808 kcal Electronic energy + Delta-G solvation = -21344.255380 eV Core-core repulsion = 18104.222931 eV Total energy + Delta-G solvation = -3240.032449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.86986 -38.06791 -36.48016 -35.40860 -32.68452 -31.54500 -30.53856 -28.66292 -27.10488 -26.76699 -24.73033 -24.29140 -22.27044 -21.64440 -20.64818 -20.22908 -17.03826 -16.41637 -16.32828 -15.90813 -15.78078 -15.39052 -15.32392 -15.18767 -14.62576 -14.37315 -14.13166 -13.96593 -13.44613 -13.02218 -12.89039 -12.54629 -12.30071 -12.04151 -11.76643 -11.63884 -11.55002 -11.35222 -11.17030 -10.90352 -10.81297 -10.73891 -10.58173 -10.35113 -9.96568 -9.89791 -9.04934 -8.76038 -8.59615 -8.13748 -8.06524 -6.07285 -4.08112 3.32638 3.37400 3.41120 3.43439 3.63115 4.16646 4.38459 4.61324 4.69386 4.75729 4.88786 4.90530 4.99186 5.07630 5.14471 5.26684 5.29234 5.35783 5.37744 5.47582 5.50387 5.55356 5.60495 5.64033 5.67308 5.72550 5.82323 5.93862 6.00463 6.06949 6.17983 6.32198 6.68977 6.71869 6.87131 7.13913 7.22787 7.24833 7.47915 7.84661 8.21132 8.66304 9.06799 9.56654 11.04466 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.003279 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.009789 B = 8536.390825 C = 9320.558731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.528 5.528 3 C 0.063 3.937 4 C 0.066 3.934 5 O -0.380 6.380 6 C 0.194 3.806 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.907 3.093 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.055 3.945 16 C 0.057 3.943 17 N -0.538 5.538 18 C 0.009 3.991 19 C 0.064 3.936 20 O -0.387 6.387 21 C 0.065 3.935 22 C 0.017 3.983 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.020 0.980 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.002 0.998 31 H 0.003 0.997 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.151 -10.075 -20.736 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.252 5.252 3 C -0.065 4.065 4 C -0.012 4.012 5 O -0.300 6.300 6 C 0.120 3.880 7 C -0.548 4.548 8 H 0.084 0.916 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.734 3.266 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.196 1.196 15 C -0.073 4.073 16 C -0.070 4.070 17 N -0.264 5.264 18 C -0.119 4.119 19 C -0.013 4.013 20 O -0.306 6.306 21 C -0.012 4.012 22 C -0.111 4.111 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.039 0.961 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.059 -10.374 -20.578 23.069 hybrid contribution 0.100 0.355 0.918 0.990 sum -0.960 -10.019 -19.659 22.086 Atomic orbital electron populations 1.22480 0.87633 1.02155 1.00379 1.61794 1.07693 1.13968 1.41777 1.22139 1.00705 0.87764 0.95879 1.22267 0.96217 0.94579 0.88170 1.87944 1.69605 1.56911 1.15522 1.20170 0.95557 0.93496 0.78792 1.21065 1.28057 1.15280 0.90439 0.91563 1.24948 0.95712 0.95440 0.98492 1.69966 1.39019 1.27148 1.17881 0.86348 0.79521 0.80302 0.80391 1.20506 1.21125 1.19629 1.22188 1.00251 0.93022 0.91835 1.22141 1.00493 0.92898 0.91501 1.62306 1.19005 1.04804 1.40261 1.22908 0.89146 1.01267 0.98549 1.22686 1.01517 0.80732 0.96373 1.87981 1.27513 1.23895 1.91194 1.22653 0.83398 0.98871 0.96309 1.22783 1.02135 0.88136 0.98074 0.91502 0.90732 0.96149 0.90248 0.94347 0.94301 0.94477 0.98041 0.97945 0.92741 0.90668 0.94508 0.90380 0.93197 0.93481 0.89081 0.88476 0.92398 0.92373 0.88504 0.89590 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.13 60.07 0.55 0.84 16 2 N -0.53 -7.97 4.71 -242.91 -1.14 -9.12 16 3 C 0.06 0.96 5.34 -3.82 -0.02 0.93 16 4 C 0.07 1.24 6.00 37.16 0.22 1.46 16 5 O -0.38 -9.41 10.27 -35.23 -0.36 -9.78 16 6 C 0.19 5.45 5.69 36.00 0.20 5.65 16 7 C -0.51 -15.35 9.43 -34.44 -0.32 -15.68 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 11 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.06 0.68 4.22 -3.82 -0.02 0.66 16 16 C 0.06 0.68 5.20 -3.82 -0.02 0.66 16 17 N -0.54 -5.71 4.88 -234.29 -1.14 -6.85 16 18 C 0.01 0.09 4.94 -3.70 -0.02 0.08 16 19 C 0.06 0.57 7.01 37.21 0.26 0.83 16 20 O -0.39 -4.15 10.83 -35.23 -0.38 -4.53 16 21 C 0.06 0.56 7.01 37.21 0.26 0.82 16 22 C 0.02 0.16 5.63 -3.71 -0.02 0.14 16 23 H 0.07 0.82 6.47 -51.93 -0.34 0.49 16 24 H 0.07 1.10 6.21 -51.93 -0.32 0.78 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 1.21 7.93 -51.93 -0.41 0.79 16 27 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.68 6.26 -51.93 -0.33 0.36 16 30 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.07 0.92 6.07 -51.93 -0.32 0.61 16 34 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.08 0.89 6.55 -51.93 -0.34 0.55 16 36 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.83 6.05 -51.93 -0.31 0.52 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -32.90 345.44 -8.95 -41.85 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -7.82 Total: -5.27 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 0.98 Total: -2.09 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -1.55 Total: -42.58 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.74 Total: -14.31 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.90 -8.95 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338966039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.787 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds