Wall clock time and date at job start Mon Mar 30 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00222 * 2 1 4 4 C 1.53002 * 109.47130 * 66.04953 * 3 2 1 5 5 O 1.42897 * 109.46933 * 64.99655 * 4 3 2 6 6 C 1.42900 * 113.99848 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47421 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99680 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00206 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99998 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99900 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47509 * 90.00016 * 11 9 7 13 13 H 1.48501 * 109.47083 * 210.00069 * 11 9 7 14 14 H 1.48508 * 109.47317 * 329.99635 * 11 9 7 15 15 C 1.46908 * 110.99572 * 236.04948 * 2 1 3 16 16 C 1.53002 * 109.46707 * 293.95240 * 15 2 1 17 17 N 1.46908 * 109.46707 * 179.97438 * 16 15 2 18 18 C 1.47024 * 110.99261 * 46.32476 * 17 16 15 19 19 C 1.53103 * 109.24985 * 182.34870 * 18 17 16 20 20 O 1.43012 * 109.29295 * 303.21723 * 19 18 17 21 21 C 1.43011 * 113.74271 * 58.65008 * 20 19 18 22 22 C 1.47018 * 110.99661 * 170.00016 * 17 16 15 23 23 H 1.08996 * 109.47534 * 183.94938 * 1 2 3 24 24 H 1.09000 * 109.46885 * 303.95662 * 1 2 3 25 25 H 1.09002 * 109.46865 * 63.94500 * 1 2 3 26 26 H 1.08999 * 109.46918 * 186.05037 * 3 2 1 27 27 H 1.09004 * 109.47045 * 306.04541 * 3 2 1 28 28 H 1.08993 * 109.46926 * 185.00199 * 4 3 2 29 29 H 1.09000 * 109.46565 * 304.99805 * 4 3 2 30 30 H 1.09001 * 109.47285 * 300.00416 * 6 5 4 31 31 H 1.09001 * 109.47288 * 59.99909 * 6 5 4 32 32 H 0.96999 * 119.99541 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.46566 * 173.95539 * 15 2 1 34 34 H 1.08999 * 109.47250 * 53.95285 * 15 2 1 35 35 H 1.09003 * 109.46906 * 60.00515 * 16 15 2 36 36 H 1.08999 * 109.47302 * 300.00013 * 16 15 2 37 37 H 1.08998 * 109.47369 * 62.43595 * 18 17 16 38 38 H 1.08998 * 109.54483 * 302.29802 * 18 17 16 39 39 H 1.09002 * 109.50635 * 183.25881 * 19 18 17 40 40 H 1.09003 * 109.50698 * 63.17493 * 19 18 17 41 41 H 1.08997 * 109.50806 * 61.26171 * 21 20 19 42 42 H 1.08997 * 109.50924 * 181.35636 * 21 20 19 43 43 H 1.08994 * 109.50209 * 57.67478 * 22 17 16 44 44 H 1.08997 * 109.50514 * 297.54292 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3183 5 8 2.2957 1.3974 2.3978 6 6 2.0216 1.9626 3.6814 7 6 2.7698 1.1932 4.7393 8 1 3.3921 0.3561 4.4595 9 6 2.6591 1.5574 6.0645 10 7 1.9001 2.5759 6.4053 11 14 3.5871 0.6041 7.3757 12 1 4.9257 1.2146 7.5773 13 1 2.8265 0.6470 8.6504 14 1 3.7469 -0.8072 6.9419 15 6 1.9954 -0.7660 -1.1377 16 6 1.6313 -2.2426 -0.9704 17 7 2.1572 -3.0085 -2.1085 18 6 3.5521 -2.6403 -2.3916 19 6 4.0403 -3.4169 -3.6175 20 8 3.8867 -4.8189 -3.3806 21 6 2.5401 -5.2118 -3.1027 22 6 2.0370 -4.4544 -1.8710 23 1 -0.3634 -1.0252 0.0708 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4514 -0.9233 26 1 3.0798 1.3443 -0.1083 27 1 1.5612 1.9273 -0.8310 28 1 1.9440 3.1010 1.2831 29 1 0.5533 2.0058 1.4691 30 1 2.3417 3.0044 3.6955 31 1 0.9514 1.9087 3.8810 32 1 1.8225 2.8322 7.3376 33 1 3.0797 -0.6611 -1.1757 34 1 1.5610 -0.3872 -2.0629 35 1 0.5470 -2.3474 -0.9324 36 1 2.0657 -2.6214 -0.0453 37 1 4.1749 -2.8880 -1.5321 38 1 3.6137 -1.5704 -2.5903 39 1 5.0914 -3.1909 -3.7966 40 1 3.4524 -3.1284 -4.4889 41 1 1.9079 -4.9755 -3.9586 42 1 2.5061 -6.2841 -2.9101 43 1 0.9926 -4.7077 -1.6893 44 1 2.6357 -4.7317 -1.0034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338966039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:42 Heat of formation + Delta-G solvation = -101.227588 kcal Electronic energy + Delta-G solvation = -21345.365036 eV Core-core repulsion = 18104.222931 eV Total energy + Delta-G solvation = -3241.142105 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66822 -39.32258 -37.99459 -36.49275 -34.89410 -32.31654 -31.71948 -29.98907 -28.81623 -27.95846 -25.86013 -25.04453 -24.46984 -22.72307 -21.74708 -21.12423 -18.62266 -17.93932 -17.48276 -17.16790 -16.96098 -16.64909 -16.29381 -16.15315 -16.00909 -15.71345 -15.45554 -15.29951 -14.57903 -14.55278 -14.05286 -13.62781 -13.47032 -13.28785 -13.18436 -12.98175 -12.77823 -12.67253 -12.42140 -12.35907 -12.33053 -12.19398 -11.76360 -11.66331 -11.41832 -11.24814 -10.85540 -10.66558 -10.17678 -9.47147 -9.19233 -8.32466 -6.44387 1.38781 1.41782 1.53953 2.34546 2.52998 2.94069 3.01099 3.13905 3.26956 3.78567 3.91337 3.99693 4.07478 4.17008 4.18846 4.22007 4.30266 4.34271 4.47548 4.49428 4.51892 4.58398 4.62520 4.67315 4.71335 4.80903 4.83117 4.85436 4.88981 4.92892 4.96174 5.04075 5.10484 5.19163 5.55035 5.81126 5.89351 5.97199 6.09709 6.17065 6.20822 6.56855 6.86369 7.27981 8.79995 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.003279 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.009789 B = 8536.390825 C = 9320.558731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.072 3.928 4 C 0.055 3.945 5 O -0.396 6.396 6 C 0.210 3.790 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.006 3.994 10 N -0.931 5.931 11 Si 0.983 3.017 12 H -0.267 1.267 13 H -0.273 1.273 14 H -0.267 1.267 15 C 0.063 3.937 16 C 0.065 3.935 17 N -0.536 5.536 18 C 0.009 3.991 19 C 0.064 3.936 20 O -0.408 6.408 21 C 0.065 3.935 22 C 0.015 3.985 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.040 0.960 30 H -0.016 1.016 31 H -0.018 1.018 32 H 0.271 0.729 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.023 0.977 37 H 0.028 0.972 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 -10.858 -21.691 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.283 5.283 3 C -0.056 4.056 4 C -0.022 4.022 5 O -0.316 6.316 6 C 0.135 3.865 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.192 4.192 10 N -0.571 5.571 11 Si 0.805 3.195 12 H -0.192 1.192 13 H -0.198 1.198 14 H -0.191 1.191 15 C -0.064 4.064 16 C -0.063 4.063 17 N -0.262 5.262 18 C -0.119 4.119 19 C -0.012 4.012 20 O -0.327 6.327 21 C -0.012 4.012 22 C -0.113 4.113 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.002 0.998 31 H 0.000 1.000 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.117 0.883 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.844 -11.155 -21.565 24.294 hybrid contribution -0.024 0.626 1.143 1.304 sum -0.867 -10.529 -20.421 22.992 Atomic orbital electron populations 1.22441 0.86799 1.02548 1.00535 1.61726 1.08761 1.14126 1.43729 1.22043 1.00901 0.88258 0.94380 1.22637 0.96137 0.95363 0.88070 1.87898 1.70551 1.57700 1.15460 1.19774 0.93873 0.92411 0.80463 1.21378 1.29178 1.15905 0.91921 0.92327 1.25956 0.96279 0.96261 1.00730 1.70068 1.39760 1.28267 1.18959 0.85193 0.78408 0.78750 0.77116 1.19164 1.19773 1.19090 1.22132 1.00117 0.92779 0.91410 1.22029 1.00625 0.92812 0.90866 1.62368 1.19298 1.05312 1.39235 1.22958 0.88517 1.02046 0.98426 1.22789 1.02626 0.79885 0.95935 1.87956 1.28693 1.24771 1.91260 1.22781 0.82697 0.99705 0.95996 1.22865 1.02726 0.87616 0.98111 0.90740 0.92759 0.93957 0.90389 0.90964 0.93442 0.94175 0.99834 1.00035 0.92040 0.90829 0.92944 0.89854 0.95820 0.95351 0.88207 0.87043 0.91431 0.91458 0.86815 0.88325 0.95181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.13 127.69 1.17 1.79 16 2 N -0.56 -16.33 4.71 -922.42 -4.35 -20.68 16 3 C 0.07 2.09 5.34 86.30 0.46 2.55 16 4 C 0.06 2.08 6.00 71.98 0.43 2.51 16 5 O -0.40 -20.09 10.27 -148.98 -1.53 -21.62 16 6 C 0.21 12.18 5.69 71.23 0.41 12.59 16 7 C -0.55 -33.56 9.43 25.60 0.24 -33.32 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 9 C 0.01 0.36 5.46 84.66 0.46 0.82 16 10 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 11 Si 0.98 45.35 29.54 68.60 2.03 47.38 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 C 0.06 1.47 4.22 86.30 0.36 1.83 16 16 C 0.06 1.48 5.20 86.30 0.45 1.93 16 17 N -0.54 -10.77 4.88 -895.15 -4.36 -15.13 16 18 C 0.01 0.16 4.94 86.31 0.43 0.59 16 19 C 0.06 1.05 7.01 72.02 0.50 1.56 16 20 O -0.41 -8.20 10.83 -148.98 -1.61 -9.81 16 21 C 0.06 1.02 7.01 72.02 0.50 1.52 16 22 C 0.02 0.27 5.63 86.31 0.49 0.76 16 23 H 0.07 1.75 6.47 -2.39 -0.02 1.74 16 24 H 0.05 1.59 6.21 -2.39 -0.01 1.58 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 2.28 7.93 -2.39 -0.02 2.26 16 27 H 0.07 1.64 8.12 -2.38 -0.02 1.62 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.49 6.26 -2.39 -0.01 1.47 16 30 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 31 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 32 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.07 1.72 6.07 -2.39 -0.01 1.71 16 34 H 0.05 1.07 8.12 -2.39 -0.02 1.05 16 35 H 0.08 1.80 6.55 -2.39 -0.02 1.78 16 36 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16 37 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.10 1.69 6.05 -2.39 -0.01 1.67 16 39 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -70.87 345.44 -2.69 -73.56 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.95 Total: 7.84 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.90 Total: -4.88 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -8.42 Total: -92.47 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -3.14 Total: -31.43 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -70.87 -2.69 -73.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338966039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.669 kcal (2) G-P(sol) polarization free energy of solvation -70.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds