Wall clock time and date at job start Mon Mar 30 2020 05:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99874 * 2 1 4 4 C 1.53006 * 109.47154 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46917 * 65.00058 * 4 3 2 6 6 C 1.46801 * 125.20398 * 90.00393 * 5 4 3 7 7 N 1.48070 * 106.14924 * 162.36628 * 6 5 4 8 8 C 1.46899 * 111.00143 * 145.97913 * 7 6 5 9 9 C 1.52997 * 109.47254 * 169.99762 * 8 7 6 10 10 O 1.42904 * 109.47396 * 64.99580 * 9 8 7 11 11 C 1.42896 * 114.00313 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46851 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00616 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99887 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00088 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99729 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46826 * 90.00506 * 16 14 12 18 18 H 1.48499 * 109.46915 * 210.00165 * 16 14 12 19 19 H 1.48497 * 109.47614 * 330.00712 * 16 14 12 20 20 C 1.48236 * 103.15826 * 27.02961 * 7 6 5 21 21 C 1.34855 * 125.20667 * 269.95553 * 5 4 3 22 22 O 1.21277 * 125.74944 * 0.49050 * 21 5 4 23 23 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46986 * 299.99692 * 1 2 3 25 25 H 1.08998 * 109.47107 * 59.99930 * 1 2 3 26 26 H 1.09000 * 109.47012 * 60.00332 * 3 2 1 27 27 H 1.08998 * 109.47226 * 299.99943 * 3 2 1 28 28 H 1.09006 * 109.47069 * 305.00182 * 4 3 2 29 29 H 1.08992 * 109.47432 * 185.00209 * 4 3 2 30 30 H 1.08998 * 110.12422 * 43.19100 * 6 5 4 31 31 H 1.09005 * 110.17327 * 281.56060 * 6 5 4 32 32 H 1.09002 * 109.47043 * 289.99833 * 8 7 6 33 33 H 1.09001 * 109.47354 * 49.99895 * 8 7 6 34 34 H 1.09001 * 109.47630 * 184.99901 * 9 8 7 35 35 H 1.09004 * 109.47346 * 305.00031 * 9 8 7 36 36 H 1.08999 * 109.46799 * 300.00326 * 11 10 9 37 37 H 1.08998 * 109.47187 * 59.99969 * 11 10 9 38 38 H 0.97003 * 119.99801 * 179.97438 * 15 14 12 39 39 H 1.09005 * 110.37261 * 92.47953 * 20 7 6 40 40 H 1.08993 * 110.38300 * 214.83142 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.3156 1.2901 -2.4828 7 7 5.0977 0.3471 -3.3144 8 6 4.8280 0.5566 -4.7431 9 6 5.8259 -0.2519 -5.5745 10 8 5.6129 -1.6470 -5.3502 11 6 6.4985 -2.4956 -6.0833 12 6 6.1854 -3.9366 -5.7727 13 1 5.3899 -4.1801 -5.0840 14 6 6.9152 -4.9442 -6.3670 15 7 6.6423 -6.2018 -6.0956 16 14 8.2915 -4.5231 -7.5578 17 1 9.5664 -4.3796 -6.8098 18 1 8.4264 -5.6084 -8.5623 19 1 7.9761 -3.2465 -8.2476 20 6 4.6086 -0.9800 -2.8704 21 6 4.1314 -0.7602 -1.4515 22 8 3.9236 -1.6290 -0.6313 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8515 0.5682 0.8410 29 1 3.9785 2.1765 0.0889 30 1 4.9162 2.1684 -2.2463 31 1 3.4073 1.5876 -3.0070 32 1 3.8140 0.2294 -4.9733 33 1 4.9308 1.6154 -4.9809 34 1 5.6837 -0.0280 -6.6318 35 1 6.8418 0.0123 -5.2807 36 1 6.3706 -2.3183 -7.1512 37 1 7.5282 -2.2778 -5.7997 38 1 7.1555 -6.9107 -6.5141 39 1 3.7837 -1.3109 -3.5014 40 1 5.4186 -1.7090 -2.8898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339173986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:41 Heat of formation + Delta-G solvation = -95.368078 kcal Electronic energy + Delta-G solvation = -21470.376646 eV Core-core repulsion = 18093.655534 eV Total energy + Delta-G solvation = -3376.721112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49820 -38.03995 -37.43334 -36.43416 -34.49720 -32.62211 -31.03123 -28.88477 -28.11544 -27.14915 -26.44266 -23.90328 -22.68322 -21.82357 -21.25359 -19.72773 -17.08482 -16.89179 -16.72250 -16.39371 -15.93559 -15.60372 -15.34700 -15.11101 -14.78679 -14.37547 -14.29563 -13.74064 -13.46810 -13.34032 -12.93092 -12.66531 -12.62129 -12.26340 -12.18165 -12.00231 -11.74334 -11.39114 -11.35799 -10.96230 -10.74075 -10.57565 -9.89803 -9.85463 -9.55974 -9.16553 -9.11532 -8.84758 -8.46808 -8.38236 -6.08814 -4.08186 2.81510 2.84774 3.26698 3.33550 3.34115 3.59776 3.84428 4.37364 4.48679 4.60208 4.76951 4.83069 4.91800 4.98445 5.10610 5.11860 5.16950 5.19269 5.22478 5.27186 5.44661 5.52073 5.59457 5.63573 5.83609 5.84087 6.09662 6.13179 6.39665 6.55675 6.61406 6.92673 6.99378 7.01720 7.19180 7.61235 8.00415 8.35538 8.66726 9.02792 9.50022 11.04151 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.003910 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.483354 B = 7159.380598 C = 7746.816835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.040 3.960 4 C 0.136 3.864 5 N -0.632 5.632 6 C 0.258 3.742 7 N -0.502 5.502 8 C 0.050 3.950 9 C 0.062 3.938 10 O -0.381 6.381 11 C 0.171 3.829 12 C -0.519 4.519 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.894 5.894 16 Si 0.876 3.124 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.267 1.267 20 C 0.017 3.983 21 C 0.521 3.479 22 O -0.507 6.507 23 H 0.086 0.914 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.001 0.999 37 H -0.001 1.001 38 H 0.266 0.734 39 H 0.092 0.908 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 21.387 8.137 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.038 4.038 4 C 0.014 3.986 5 N -0.370 5.370 6 C 0.045 3.955 7 N -0.228 5.228 8 C -0.078 4.078 9 C -0.016 4.016 10 O -0.300 6.300 11 C 0.096 3.904 12 C -0.557 4.557 13 H 0.101 0.899 14 C -0.129 4.129 15 N -0.533 5.533 16 Si 0.702 3.298 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.113 4.113 21 C 0.309 3.691 22 O -0.380 6.380 23 H 0.104 0.896 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.019 0.981 37 H 0.017 0.983 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.726 20.555 8.799 23.657 hybrid contribution -0.170 0.521 -1.105 1.233 sum -7.896 21.076 7.694 23.786 Atomic orbital electron populations 1.22730 0.81374 1.02923 0.99419 1.88103 1.19270 1.26648 1.95226 1.23038 0.94681 0.85801 1.00246 1.21320 0.91870 0.99144 0.86290 1.48491 1.68390 1.07794 1.12288 1.22793 0.95490 0.93840 0.83416 1.65661 1.50067 1.02750 1.04348 1.22444 0.98914 0.99846 0.86600 1.22298 0.97960 0.84587 0.96761 1.87895 1.59545 1.13384 1.69162 1.20575 0.88561 0.90747 0.90522 1.20889 1.19625 0.87216 1.27999 0.89911 1.24770 0.97046 0.94734 0.96385 1.69881 1.40849 0.98905 1.43616 0.86858 0.82953 0.78494 0.81452 1.19932 1.20871 1.19155 1.23167 1.02963 0.93019 0.92187 1.21254 0.75828 0.81932 0.90108 1.90732 1.50310 1.46623 1.50287 0.89550 0.94321 0.94410 0.92407 0.93305 0.89067 0.88799 0.89236 0.93636 0.93048 0.89406 0.93616 0.93150 0.98085 0.98296 0.92379 0.88980 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.37 -4.91 10.41 -35.23 -0.37 -5.28 16 3 C 0.04 0.37 6.28 37.16 0.23 0.61 16 4 C 0.14 1.33 6.43 -4.04 -0.03 1.31 16 5 N -0.63 -8.09 2.93 -176.02 -0.52 -8.61 16 6 C 0.26 2.73 7.22 -61.70 -0.45 2.28 16 7 N -0.50 -6.92 5.49 -237.23 -1.30 -8.23 16 8 C 0.05 0.63 5.22 -3.83 -0.02 0.61 16 9 C 0.06 1.00 6.27 37.16 0.23 1.23 16 10 O -0.38 -8.30 8.26 -35.23 -0.29 -8.59 16 11 C 0.17 4.24 4.76 36.00 0.17 4.41 16 12 C -0.52 -15.33 9.99 -34.44 -0.34 -15.67 16 13 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 14 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 15 N -0.89 -27.81 13.96 55.43 0.77 -27.03 16 16 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 20 C 0.02 0.29 5.19 -3.94 -0.02 0.27 16 21 C 0.52 8.99 7.95 -10.65 -0.08 8.91 16 22 O -0.51 -10.73 17.74 5.56 0.10 -10.63 16 23 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 1.04 8.02 -51.93 -0.42 0.62 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.42 7.79 -51.93 -0.40 0.02 16 32 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 33 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.00 0.04 7.20 -51.93 -0.37 -0.34 16 37 H 0.00 -0.02 7.57 -51.93 -0.39 -0.41 16 38 H 0.27 7.67 8.31 -40.82 -0.34 7.34 16 39 H 0.09 1.62 7.45 -51.93 -0.39 1.24 16 40 H 0.13 2.61 7.67 -51.93 -0.40 2.21 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -35.71 333.88 -7.11 -42.82 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -6.58 Total: -3.64 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 0.71 Total: 7.41 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -1.04 Total: -43.87 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.56 Total: -24.49 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.71 -7.11 -42.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339173986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.547 kcal (2) G-P(sol) polarization free energy of solvation -35.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds