Wall clock time and date at job start Mon Mar 30 2020 05:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99874 * 2 1 4 4 C 1.53006 * 109.47154 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46917 * 65.00058 * 4 3 2 6 6 C 1.46801 * 125.20398 * 90.00393 * 5 4 3 7 7 N 1.48070 * 106.14924 * 162.36628 * 6 5 4 8 8 C 1.46899 * 111.00143 * 145.97913 * 7 6 5 9 9 C 1.52997 * 109.47254 * 169.99762 * 8 7 6 10 10 O 1.42904 * 109.47396 * 64.99580 * 9 8 7 11 11 C 1.42896 * 114.00313 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46851 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00616 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99887 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00088 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99729 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46826 * 90.00506 * 16 14 12 18 18 H 1.48499 * 109.46915 * 210.00165 * 16 14 12 19 19 H 1.48497 * 109.47614 * 330.00712 * 16 14 12 20 20 C 1.48236 * 103.15826 * 27.02961 * 7 6 5 21 21 C 1.34855 * 125.20667 * 269.95553 * 5 4 3 22 22 O 1.21277 * 125.74944 * 0.49050 * 21 5 4 23 23 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46986 * 299.99692 * 1 2 3 25 25 H 1.08998 * 109.47107 * 59.99930 * 1 2 3 26 26 H 1.09000 * 109.47012 * 60.00332 * 3 2 1 27 27 H 1.08998 * 109.47226 * 299.99943 * 3 2 1 28 28 H 1.09006 * 109.47069 * 305.00182 * 4 3 2 29 29 H 1.08992 * 109.47432 * 185.00209 * 4 3 2 30 30 H 1.08998 * 110.12422 * 43.19100 * 6 5 4 31 31 H 1.09005 * 110.17327 * 281.56060 * 6 5 4 32 32 H 1.09002 * 109.47043 * 289.99833 * 8 7 6 33 33 H 1.09001 * 109.47354 * 49.99895 * 8 7 6 34 34 H 1.09001 * 109.47630 * 184.99901 * 9 8 7 35 35 H 1.09004 * 109.47346 * 305.00031 * 9 8 7 36 36 H 1.08999 * 109.46799 * 300.00326 * 11 10 9 37 37 H 1.08998 * 109.47187 * 59.99969 * 11 10 9 38 38 H 0.97003 * 119.99801 * 179.97438 * 15 14 12 39 39 H 1.09005 * 110.37261 * 92.47953 * 20 7 6 40 40 H 1.08993 * 110.38300 * 214.83142 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.3156 1.2901 -2.4828 7 7 5.0977 0.3471 -3.3144 8 6 4.8280 0.5566 -4.7431 9 6 5.8259 -0.2519 -5.5745 10 8 5.6129 -1.6470 -5.3502 11 6 6.4985 -2.4956 -6.0833 12 6 6.1854 -3.9366 -5.7727 13 1 5.3899 -4.1801 -5.0840 14 6 6.9152 -4.9442 -6.3670 15 7 6.6423 -6.2018 -6.0956 16 14 8.2915 -4.5231 -7.5578 17 1 9.5664 -4.3796 -6.8098 18 1 8.4264 -5.6084 -8.5623 19 1 7.9761 -3.2465 -8.2476 20 6 4.6086 -0.9800 -2.8704 21 6 4.1314 -0.7602 -1.4515 22 8 3.9236 -1.6290 -0.6313 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8515 0.5682 0.8410 29 1 3.9785 2.1765 0.0889 30 1 4.9162 2.1684 -2.2463 31 1 3.4073 1.5876 -3.0070 32 1 3.8140 0.2294 -4.9733 33 1 4.9308 1.6154 -4.9809 34 1 5.6837 -0.0280 -6.6318 35 1 6.8418 0.0123 -5.2807 36 1 6.3706 -2.3183 -7.1512 37 1 7.5282 -2.2778 -5.7997 38 1 7.1555 -6.9107 -6.5141 39 1 3.7837 -1.3109 -3.5014 40 1 5.4186 -1.7090 -2.8898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339173986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:40 Heat of formation + Delta-G solvation = -125.046199 kcal Electronic energy + Delta-G solvation = -21471.663586 eV Core-core repulsion = 18093.655534 eV Total energy + Delta-G solvation = -3378.008052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65687 -39.03567 -38.73041 -37.89902 -35.62738 -34.77772 -32.15134 -30.33820 -29.49061 -28.57919 -27.23234 -24.88960 -24.00071 -23.58787 -22.39577 -20.85697 -19.04571 -18.08134 -17.73568 -17.49028 -17.26381 -16.85458 -16.52421 -16.34909 -16.17556 -15.82070 -15.45909 -15.07824 -14.90136 -14.60604 -14.39819 -13.89774 -13.71315 -13.64781 -13.32576 -13.10575 -12.95372 -12.76422 -12.56719 -12.41866 -12.12326 -12.01223 -11.80656 -11.33107 -10.95396 -10.88268 -10.62561 -10.28203 -10.22823 -9.41286 -8.35343 -6.43296 1.33940 1.37704 1.47604 1.48212 1.88451 2.30798 2.74095 2.89972 2.97614 3.14172 3.38044 3.85692 4.05182 4.15542 4.19656 4.30154 4.36650 4.38828 4.42572 4.45002 4.48493 4.54682 4.57438 4.65068 4.68008 4.79826 4.84949 4.88980 4.93150 5.05391 5.31083 5.42047 5.47180 5.90962 5.97569 6.03099 6.29000 6.61835 6.79906 7.09629 7.21448 8.82176 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.003910 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.483354 B = 7159.380598 C = 7746.816835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.420 6.420 3 C 0.037 3.963 4 C 0.129 3.871 5 N -0.620 5.620 6 C 0.256 3.744 7 N -0.509 5.509 8 C 0.056 3.944 9 C 0.049 3.951 10 O -0.405 6.405 11 C 0.183 3.817 12 C -0.544 4.544 13 H 0.026 0.974 14 C 0.009 3.991 15 N -0.946 5.946 16 Si 0.958 3.042 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.240 1.240 20 C 0.025 3.975 21 C 0.513 3.487 22 O -0.562 6.562 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.144 0.856 30 H 0.131 0.869 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.140 0.860 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.014 0.986 37 H 0.008 0.992 38 H 0.272 0.728 39 H 0.075 0.925 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 25.889 6.862 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.340 6.340 3 C -0.040 4.040 4 C 0.008 3.992 5 N -0.355 5.355 6 C 0.044 3.956 7 N -0.235 5.235 8 C -0.072 4.072 9 C -0.028 4.028 10 O -0.325 6.325 11 C 0.107 3.893 12 C -0.582 4.582 13 H 0.044 0.956 14 C -0.188 4.188 15 N -0.585 5.585 16 Si 0.780 3.220 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.163 1.163 20 C -0.106 4.106 21 C 0.300 3.700 22 O -0.440 6.440 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.161 0.839 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.158 0.842 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.032 0.968 37 H 0.026 0.974 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.982 25.151 7.526 27.165 hybrid contribution -0.509 -0.796 -0.620 1.130 sum -7.490 24.355 6.905 26.400 Atomic orbital electron populations 1.22822 0.80048 1.02849 1.00960 1.88062 1.21055 1.29305 1.95584 1.23223 0.93755 0.84684 1.02335 1.21708 0.92915 1.00653 0.83943 1.48595 1.66536 1.06255 1.14127 1.23190 0.97058 0.93399 0.81914 1.65620 1.51010 1.01232 1.05669 1.22546 0.97599 1.01917 0.85147 1.22726 0.99552 0.81556 0.98985 1.87880 1.59046 1.16462 1.69074 1.20235 0.89271 0.88516 0.91248 1.21204 1.18656 0.90841 1.27453 0.95566 1.25901 1.00235 0.94165 0.98529 1.70059 1.42682 1.00501 1.45302 0.85568 0.78507 0.79462 0.78511 1.18696 1.20036 1.16346 1.22809 1.00781 0.94438 0.92610 1.21282 0.75791 0.83349 0.89567 1.90686 1.53026 1.48599 1.51649 0.90634 0.92215 0.93281 0.89570 0.91713 0.91388 0.83874 0.85144 0.90972 0.93278 0.84212 0.91542 0.92703 0.96805 0.97442 0.91922 0.90683 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.42 -10.92 10.41 -148.98 -1.55 -12.47 16 3 C 0.04 0.59 6.28 71.98 0.45 1.04 16 4 C 0.13 2.21 6.43 86.38 0.56 2.76 16 5 N -0.62 -14.86 2.93 -829.14 -2.43 -17.29 16 6 C 0.26 4.39 7.22 170.24 1.23 5.62 16 7 N -0.51 -13.07 5.49 -904.45 -4.97 -18.04 16 8 C 0.06 1.22 5.22 86.30 0.45 1.67 16 9 C 0.05 1.46 6.27 71.98 0.45 1.91 16 10 O -0.40 -17.94 8.26 -148.98 -1.23 -19.17 16 11 C 0.18 9.09 4.76 71.24 0.34 9.43 16 12 C -0.54 -33.64 9.99 25.60 0.26 -33.38 16 13 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 14 C 0.01 0.55 5.47 84.66 0.46 1.02 16 15 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 16 Si 0.96 43.94 27.47 68.60 1.88 45.83 16 17 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 20 C 0.02 0.89 5.19 85.49 0.44 1.34 16 21 C 0.51 18.46 7.95 87.84 0.70 19.16 16 22 O -0.56 -25.63 17.74 -3.02 -0.05 -25.69 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 1.52 8.02 -2.38 -0.02 1.50 16 29 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 0.95 7.79 -2.38 -0.02 0.93 16 32 H 0.05 1.13 7.66 -2.39 -0.02 1.12 16 33 H 0.14 1.70 8.08 -2.39 -0.02 1.68 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 37 H 0.01 0.37 7.57 -2.39 -0.02 0.36 16 38 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 39 H 0.08 2.86 7.45 -2.38 -0.02 2.84 16 40 H 0.09 3.83 7.67 -2.39 -0.02 3.81 16 Total: -1.00 -86.09 333.88 -0.51 -86.60 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.95 Total: 8.76 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 6.59 Total: 12.35 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -7.10 Total: -96.22 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -2.83 Total: -57.32 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -86.09 -0.51 -86.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339173986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.445 kcal (2) G-P(sol) polarization free energy of solvation -86.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds