Wall clock time and date at job start Mon Mar 30 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81394 * 102.99891 * 2 1 4 4 C 1.50700 * 109.47242 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99945 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00554 * 179.72564 * 4 3 2 7 7 C 1.46498 * 120.00071 * 180.27915 * 6 4 3 8 8 C 1.53007 * 109.46757 * 179.97438 * 7 6 4 9 9 H 1.08997 * 109.49556 * 305.06342 * 8 7 6 10 10 C 1.53046 * 109.49525 * 184.99793 * 8 7 6 11 11 C 1.53038 * 109.53821 * 178.68297 * 10 8 7 12 12 C 1.53192 * 109.31238 * 61.36221 * 11 10 8 13 13 N 1.46922 * 108.77854 * 305.36711 * 12 11 10 14 14 C 1.36936 * 120.63268 * 233.60667 * 13 12 11 15 15 H 1.07999 * 120.00138 * 151.82444 * 14 13 12 16 16 C 1.38812 * 119.99831 * 331.82803 * 14 13 12 17 17 N 1.31616 * 120.00108 * 343.07466 * 16 14 13 18 18 Si 1.86801 * 120.00003 * 163.07545 * 16 14 13 19 19 H 1.48496 * 109.46925 * 90.00023 * 18 16 14 20 20 H 1.48493 * 109.47017 * 210.00118 * 18 16 14 21 21 H 1.48495 * 109.46996 * 330.00023 * 18 16 14 22 22 C 1.46925 * 118.73829 * 53.60779 * 13 12 11 23 23 H 1.09007 * 109.47235 * 299.99772 * 1 2 3 24 24 H 1.09001 * 109.47091 * 59.99731 * 1 2 3 25 25 H 1.09000 * 109.47464 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47432 * 60.00170 * 3 2 1 27 27 H 1.08999 * 109.47925 * 299.99982 * 3 2 1 28 28 H 0.97000 * 119.99601 * 0.27355 * 6 4 3 29 29 H 1.08998 * 109.47201 * 299.99283 * 7 6 4 30 30 H 1.08998 * 109.47283 * 59.99734 * 7 6 4 31 31 H 1.09003 * 109.45876 * 298.70561 * 10 8 7 32 32 H 1.09004 * 109.45642 * 58.67586 * 10 8 7 33 33 H 1.08992 * 109.49719 * 181.31699 * 11 10 8 34 34 H 1.09007 * 109.49595 * 301.41390 * 11 10 8 35 35 H 1.09004 * 109.58341 * 65.15585 * 12 11 10 36 36 H 1.09003 * 109.58613 * 185.57635 * 12 11 10 37 37 H 0.97000 * 120.00420 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.58964 * 186.60304 * 22 13 12 39 39 H 1.09000 * 109.59236 * 66.18020 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9374 0.0006 5 8 4.4404 0.9621 0.0006 6 7 4.2575 3.1730 -0.0048 7 6 5.7132 3.3380 -0.0104 8 6 6.0573 4.8289 -0.0166 9 1 5.5611 5.3133 -0.8575 10 6 7.5722 5.0028 -0.1481 11 6 7.9147 6.4939 -0.1874 12 6 7.4641 7.1519 1.1206 13 7 6.0379 6.8655 1.3273 14 6 5.1470 7.8819 1.5474 15 1 4.1135 7.7667 1.2557 16 6 5.5722 9.0602 2.1454 17 7 6.7156 9.0925 2.7964 18 14 4.5215 10.6001 2.0261 19 1 3.5814 10.6481 3.1746 20 1 5.3966 11.7996 2.0523 21 1 3.7515 10.5768 0.7567 22 6 5.5858 5.4680 1.2934 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8031 2.2371 0.8900 27 1 1.8032 2.2372 -0.8899 28 1 3.6809 3.9531 -0.0052 29 1 6.1352 2.8711 0.8795 30 1 6.1290 2.8658 -0.9004 31 1 8.0664 4.5391 0.7056 32 1 7.9138 4.5276 -1.0677 33 1 8.9913 6.6169 -0.3045 34 1 7.4009 6.9632 -1.0265 35 1 8.0422 6.7470 1.9513 36 1 7.6152 8.2296 1.0585 37 1 7.0129 9.9160 3.2140 38 1 4.4976 5.4346 1.3453 39 1 6.0107 4.9258 2.1381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359710487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:40 Heat of formation + Delta-G solvation = -27.369765 kcal Electronic energy + Delta-G solvation = -18973.535014 eV Core-core repulsion = 16042.515401 eV Total energy + Delta-G solvation = -2931.019613 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.67913 -37.81410 -34.86430 -33.07486 -31.13174 -30.47719 -29.67154 -28.90532 -25.40731 -25.08837 -22.17220 -21.08861 -20.57932 -19.10860 -17.31530 -16.67591 -16.58555 -15.82449 -15.42504 -14.87281 -14.59432 -13.99752 -13.95838 -13.79186 -13.63277 -13.45128 -12.92430 -12.79529 -12.59688 -12.26678 -12.19971 -12.08941 -11.32381 -11.05645 -10.74114 -10.54179 -10.28517 -10.21879 -10.19726 -10.05942 -9.92899 -9.60488 -9.46067 -9.00470 -8.50893 -7.85542 -6.71388 -5.83480 -3.26746 1.26574 2.32107 2.56385 3.22423 3.32929 3.40444 3.41878 4.43692 4.63071 4.77270 4.85698 4.87745 4.99767 5.07301 5.26304 5.40102 5.42390 5.42815 5.58335 5.79789 5.91384 5.96277 6.19737 6.28806 6.34031 6.44165 6.55346 6.66653 6.73323 6.82536 6.92281 7.36324 7.46857 7.63519 7.73696 8.16442 8.40022 9.16189 9.79737 10.36746 11.24781 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.003910 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.748857 B = 7158.708194 C = 8204.710791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.187 6.187 3 C -0.129 4.129 4 C 0.527 3.473 5 O -0.526 6.526 6 N -0.719 5.719 7 C 0.128 3.872 8 C -0.118 4.118 9 H 0.073 0.927 10 C -0.100 4.100 11 C -0.142 4.142 12 C 0.169 3.831 13 N -0.592 5.592 14 C -0.256 4.256 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.154 3.846 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.404 0.596 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.018 0.982 36 H 0.086 0.914 37 H 0.254 0.746 38 H 0.049 0.951 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 -11.967 -6.877 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.037 5.963 3 C -0.280 4.280 4 C 0.311 3.689 5 O -0.402 6.402 6 N -0.371 5.371 7 C 0.004 3.996 8 C -0.138 4.138 9 H 0.091 0.909 10 C -0.138 4.138 11 C -0.181 4.181 12 C 0.043 3.957 13 N -0.314 5.314 14 C -0.385 4.385 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.731 3.269 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.027 3.973 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.239 0.761 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -6.849 -13.369 -6.771 16.476 hybrid contribution -1.688 2.386 0.028 2.923 sum -8.537 -10.983 -6.743 15.459 Atomic orbital electron populations 1.23536 0.96005 1.06645 1.04921 1.87503 1.04396 1.06376 1.98026 1.23541 0.98041 0.99122 1.07269 1.19601 0.88692 0.83700 0.76891 1.90741 1.62022 1.38523 1.48924 1.45975 1.08843 1.07467 1.74821 1.21500 0.78773 0.97355 1.01930 1.21963 0.97610 0.92497 1.01764 0.90853 1.21343 0.94275 0.97714 1.00454 1.22171 0.99199 0.94948 1.01766 1.20801 0.83645 1.00525 0.90716 1.44031 1.04555 0.99986 1.82811 1.19133 0.92207 0.93836 1.33374 0.91819 1.25047 0.97628 0.99618 0.97226 1.70033 1.22381 1.26546 1.35517 0.86321 0.79588 0.83098 0.77899 1.21386 1.21519 1.20500 1.20898 0.97078 0.86814 0.92510 0.90445 0.90527 0.87848 0.87040 0.87212 0.76106 0.91417 0.91832 0.92427 0.93400 0.93142 0.92759 0.96416 0.89575 0.93578 0.93216 0.96318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 10.76 101.05 1.09 0.10 16 2 S -0.19 -2.13 21.52 -107.50 -2.31 -4.44 16 3 C -0.13 -1.28 6.42 36.01 0.23 -1.05 16 4 C 0.53 7.16 7.85 -10.99 -0.09 7.07 16 5 O -0.53 -9.23 15.86 5.55 0.09 -9.14 16 6 N -0.72 -9.12 5.33 -60.29 -0.32 -9.44 16 7 C 0.13 1.82 5.07 -4.04 -0.02 1.80 16 8 C -0.12 -1.87 2.37 -90.49 -0.21 -2.09 16 9 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 10 C -0.10 -1.60 5.17 -26.69 -0.14 -1.74 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 13 N -0.59 -14.25 2.99 -172.32 -0.52 -14.77 16 14 C -0.26 -6.78 9.58 -15.06 -0.14 -6.92 16 15 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 16 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 17 N -0.90 -25.70 11.20 55.49 0.62 -25.08 16 18 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.15 3.01 5.60 -3.71 -0.02 2.99 16 23 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.11 0.92 8.14 -51.92 -0.42 0.49 16 27 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.40 4.42 7.71 -40.82 -0.31 4.11 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.05 0.92 7.14 -51.93 -0.37 0.55 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -31.45 328.02 -8.57 -40.02 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.47 Total: 0.55 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 0.43 Total: 1.30 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.22 Total: -49.29 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 16 Polarization: -2.13 SS G_CDS: -2.31 Total: -4.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.45 -8.57 -40.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359710487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.650 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds