Wall clock time and date at job start Mon Mar 30 2020 04:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81394 * 102.99891 * 2 1 4 4 C 1.50700 * 109.47242 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99945 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00554 * 179.72564 * 4 3 2 7 7 C 1.46498 * 120.00071 * 180.27915 * 6 4 3 8 8 C 1.53007 * 109.46757 * 179.97438 * 7 6 4 9 9 H 1.08997 * 109.49556 * 305.06342 * 8 7 6 10 10 C 1.53046 * 109.49525 * 184.99793 * 8 7 6 11 11 C 1.53038 * 109.53821 * 178.68297 * 10 8 7 12 12 C 1.53192 * 109.31238 * 61.36221 * 11 10 8 13 13 N 1.46922 * 108.77854 * 305.36711 * 12 11 10 14 14 C 1.36936 * 120.63268 * 233.60667 * 13 12 11 15 15 H 1.07999 * 120.00138 * 151.82444 * 14 13 12 16 16 C 1.38812 * 119.99831 * 331.82803 * 14 13 12 17 17 N 1.31616 * 120.00108 * 343.07466 * 16 14 13 18 18 Si 1.86801 * 120.00003 * 163.07545 * 16 14 13 19 19 H 1.48496 * 109.46925 * 90.00023 * 18 16 14 20 20 H 1.48493 * 109.47017 * 210.00118 * 18 16 14 21 21 H 1.48495 * 109.46996 * 330.00023 * 18 16 14 22 22 C 1.46925 * 118.73829 * 53.60779 * 13 12 11 23 23 H 1.09007 * 109.47235 * 299.99772 * 1 2 3 24 24 H 1.09001 * 109.47091 * 59.99731 * 1 2 3 25 25 H 1.09000 * 109.47464 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47432 * 60.00170 * 3 2 1 27 27 H 1.08999 * 109.47925 * 299.99982 * 3 2 1 28 28 H 0.97000 * 119.99601 * 0.27355 * 6 4 3 29 29 H 1.08998 * 109.47201 * 299.99283 * 7 6 4 30 30 H 1.08998 * 109.47283 * 59.99734 * 7 6 4 31 31 H 1.09003 * 109.45876 * 298.70561 * 10 8 7 32 32 H 1.09004 * 109.45642 * 58.67586 * 10 8 7 33 33 H 1.08992 * 109.49719 * 181.31699 * 11 10 8 34 34 H 1.09007 * 109.49595 * 301.41390 * 11 10 8 35 35 H 1.09004 * 109.58341 * 65.15585 * 12 11 10 36 36 H 1.09003 * 109.58613 * 185.57635 * 12 11 10 37 37 H 0.97000 * 120.00420 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.58964 * 186.60304 * 22 13 12 39 39 H 1.09000 * 109.59236 * 66.18020 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9374 0.0006 5 8 4.4404 0.9621 0.0006 6 7 4.2575 3.1730 -0.0048 7 6 5.7132 3.3380 -0.0104 8 6 6.0573 4.8289 -0.0166 9 1 5.5611 5.3133 -0.8575 10 6 7.5722 5.0028 -0.1481 11 6 7.9147 6.4939 -0.1874 12 6 7.4641 7.1519 1.1206 13 7 6.0379 6.8655 1.3273 14 6 5.1470 7.8819 1.5474 15 1 4.1135 7.7667 1.2557 16 6 5.5722 9.0602 2.1454 17 7 6.7156 9.0925 2.7964 18 14 4.5215 10.6001 2.0261 19 1 3.5814 10.6481 3.1746 20 1 5.3966 11.7996 2.0523 21 1 3.7515 10.5768 0.7567 22 6 5.5858 5.4680 1.2934 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8031 2.2371 0.8900 27 1 1.8032 2.2372 -0.8899 28 1 3.6809 3.9531 -0.0052 29 1 6.1352 2.8711 0.8795 30 1 6.1290 2.8658 -0.9004 31 1 8.0664 4.5391 0.7056 32 1 7.9138 4.5276 -1.0677 33 1 8.9913 6.6169 -0.3045 34 1 7.4009 6.9632 -1.0265 35 1 8.0422 6.7470 1.9513 36 1 7.6152 8.2296 1.0585 37 1 7.0129 9.9160 3.2140 38 1 4.4976 5.4346 1.3453 39 1 6.0107 4.9258 2.1381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359710487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:39 Heat of formation + Delta-G solvation = -47.701531 kcal Electronic energy + Delta-G solvation = -18974.416665 eV Core-core repulsion = 16042.515401 eV Total energy + Delta-G solvation = -2931.901265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.81143 -39.32550 -36.27337 -34.69426 -32.43229 -32.26875 -30.72992 -29.54390 -27.24718 -26.46003 -23.83238 -22.61020 -21.70278 -20.61676 -18.72933 -18.14534 -17.60762 -16.91160 -16.75151 -16.41493 -15.92308 -15.57924 -15.07658 -14.84484 -14.59889 -14.54541 -14.46868 -14.01496 -13.82256 -13.75562 -13.24001 -13.13260 -12.99963 -12.86184 -12.48353 -12.26844 -11.97681 -11.81965 -11.57945 -11.37709 -11.11194 -10.98404 -10.92388 -10.52599 -10.12074 -8.69304 -8.66936 -7.86111 -5.32202 0.51843 1.47601 1.49704 1.53948 1.58740 1.65113 2.22466 2.51955 3.29165 3.59242 3.72381 3.99465 4.00599 4.07247 4.09665 4.29009 4.39315 4.40128 4.41172 4.57675 4.61971 4.76825 4.88320 4.91014 4.94067 5.01223 5.11176 5.22805 5.33436 5.37919 5.46861 5.57697 5.67462 5.78713 6.39475 6.46672 7.15454 7.15632 7.87109 8.39422 9.20265 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.003910 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.748857 B = 7158.708194 C = 8204.710791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.268 6.268 3 C -0.112 4.112 4 C 0.524 3.476 5 O -0.570 6.570 6 N -0.712 5.712 7 C 0.139 3.861 8 C -0.099 4.099 9 H 0.079 0.921 10 C -0.098 4.098 11 C -0.130 4.130 12 C 0.172 3.828 13 N -0.610 5.610 14 C -0.262 4.262 15 H 0.073 0.927 16 C -0.053 4.053 17 N -0.937 5.937 18 Si 0.966 3.034 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.267 1.267 22 C 0.152 3.848 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.414 0.586 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.054 0.946 35 H -0.009 1.009 36 H 0.051 0.949 37 H 0.249 0.751 38 H 0.060 0.940 39 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.026 -12.316 -8.402 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.044 6.044 3 C -0.262 4.262 4 C 0.310 3.690 5 O -0.449 6.449 6 N -0.365 5.365 7 C 0.014 3.986 8 C -0.120 4.120 9 H 0.098 0.902 10 C -0.136 4.136 11 C -0.169 4.169 12 C 0.046 3.954 13 N -0.333 5.333 14 C -0.392 4.392 15 H 0.090 0.910 16 C -0.248 4.248 17 N -0.583 5.583 18 Si 0.794 3.206 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.191 1.191 22 C 0.026 3.974 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.130 0.870 26 H 0.151 0.849 27 H 0.156 0.844 28 H 0.251 0.749 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.009 0.991 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -8.782 -13.725 -8.315 18.293 hybrid contribution -1.125 2.448 0.538 2.747 sum -9.907 -11.277 -7.777 16.906 Atomic orbital electron populations 1.23552 0.91440 1.07702 1.06263 1.87787 1.09498 1.08800 1.98276 1.23473 0.95241 0.97868 1.09621 1.20182 0.90154 0.83023 0.75668 1.90727 1.63418 1.39894 1.50888 1.45898 1.08353 1.07875 1.74327 1.21274 0.79853 0.95689 1.01769 1.21716 0.97546 0.93240 0.99457 0.90230 1.21346 0.94348 0.95970 1.01956 1.21995 1.00229 0.96152 0.98488 1.20634 0.83520 0.98740 0.92461 1.44310 1.04505 1.01446 1.83002 1.19554 0.92943 0.94550 1.32177 0.90961 1.25824 0.98946 1.02510 0.97507 1.70199 1.24298 1.26770 1.37058 0.85295 0.77883 0.79190 0.78183 1.21223 1.22287 1.19148 1.21036 0.97704 0.84593 0.94043 0.89231 0.88961 0.86958 0.84914 0.84360 0.74864 0.92662 0.90988 0.92801 0.90181 0.91350 0.92703 0.99076 0.93045 0.94235 0.92176 0.97815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 10.76 113.37 1.22 -0.14 16 2 S -0.27 -5.74 21.52 -56.49 -1.22 -6.96 16 3 C -0.11 -1.94 6.42 71.24 0.46 -1.48 16 4 C 0.52 13.33 7.85 87.66 0.69 14.01 16 5 O -0.57 -19.70 15.86 -3.04 -0.05 -19.75 16 6 N -0.71 -16.46 5.33 -463.05 -2.47 -18.93 16 7 C 0.14 3.66 5.07 86.38 0.44 4.10 16 8 C -0.10 -2.94 2.37 -10.71 -0.03 -2.97 16 9 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 10 C -0.10 -2.94 5.17 30.62 0.16 -2.78 16 11 C -0.13 -4.62 6.08 30.67 0.19 -4.43 16 12 C 0.17 8.17 5.30 86.36 0.46 8.62 16 13 N -0.61 -29.39 2.99 -699.10 -2.09 -31.49 16 14 C -0.26 -13.83 9.58 84.03 0.81 -13.02 16 15 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 16 C -0.05 -2.87 4.92 84.86 0.42 -2.46 16 17 N -0.94 -55.00 11.20 21.65 0.24 -54.76 16 18 Si 0.97 43.55 29.59 68.60 2.03 45.58 16 19 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 C 0.15 5.81 5.60 86.36 0.48 6.29 16 23 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.41 7.87 7.71 -92.71 -0.71 7.15 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 1.95 8.14 -2.38 -0.02 1.94 16 35 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 36 H 0.05 2.78 6.06 -2.39 -0.01 2.77 16 37 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.06 2.13 7.14 -2.39 -0.02 2.11 16 39 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 Total: -1.00 -70.03 328.02 2.04 -67.99 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.31 Total: 12.57 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 5.29 Total: 5.74 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -4.32 Total: -105.18 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.05 Total: -19.75 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -5.74 SS G_CDS: -1.22 Total: -6.96 kcal Total: -70.03 2.04 -67.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359710487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.290 kcal (2) G-P(sol) polarization free energy of solvation -70.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds