Wall clock time and date at job start Mon Mar 30 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99579 * 2 1 4 4 H 1.48501 * 109.47277 * 270.00287 * 3 2 1 5 5 H 1.48500 * 109.47077 * 30.00420 * 3 2 1 6 6 H 1.48508 * 109.46741 * 150.00220 * 3 2 1 7 7 C 1.37877 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99869 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99970 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40333 * 66.46230 * 9 7 2 11 11 O 1.42102 * 106.39981 * 293.53970 * 9 7 2 12 12 N 1.65601 * 107.21339 * 180.02562 * 9 7 2 13 13 C 1.46499 * 120.00123 * 65.00223 * 12 9 7 14 14 C 1.53001 * 109.47177 * 164.99835 * 13 12 9 15 15 H 1.09003 * 115.56659 * 29.30460 * 14 13 12 16 16 C 1.53079 * 117.51442 * 243.60930 * 14 13 12 17 17 C 1.52997 * 59.98332 * 252.52258 * 16 14 13 18 18 Cl 1.80299 * 117.50400 * 107.50110 * 17 16 14 19 19 Cl 1.80299 * 117.49560 * 252.49961 * 17 16 14 20 20 H 0.96999 * 120.00192 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99934 * 244.99894 * 12 9 7 22 22 H 1.08997 * 109.47456 * 44.99747 * 13 12 9 23 23 H 1.08997 * 109.46802 * 284.99389 * 13 12 9 24 24 H 1.08998 * 117.49992 * 145.03016 * 16 14 13 25 25 H 1.09001 * 117.50746 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4511 -2.7951 -1.2500 11 8 0.4520 -2.7955 1.2495 12 7 2.2485 -3.9353 -0.0005 13 6 3.1396 -4.1087 1.1493 14 6 3.8051 -5.4844 1.0760 15 1 3.9515 -5.8832 0.0722 16 6 3.4914 -6.4822 2.1938 17 6 4.8658 -5.8131 2.1284 18 17 5.2361 -4.5495 3.3601 19 17 6.2628 -6.8297 1.6130 20 1 -0.4850 0.8400 0.0004 21 1 2.3174 -4.5324 -0.7619 22 1 2.5625 -4.0329 2.0709 23 1 3.9056 -3.3334 1.1355 24 1 3.4317 -7.5368 1.9249 25 1 2.8113 -6.1582 2.9816 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379375471.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:35 Heat of formation + Delta-G solvation = -84.502922 kcal Electronic energy + Delta-G solvation = -14903.940061 eV Core-core repulsion = 11903.501338 eV Total energy + Delta-G solvation = -3000.438723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 272.978 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.40763 -36.15536 -35.89525 -35.21831 -33.98699 -33.50303 -33.02594 -26.16546 -26.01034 -22.44166 -21.06787 -18.97829 -17.54174 -16.86714 -16.23295 -15.31086 -14.83408 -14.66747 -14.21139 -13.67021 -13.39379 -13.03902 -12.61949 -12.04526 -11.87843 -11.68212 -11.33486 -11.25307 -11.21635 -11.00011 -10.61738 -10.59111 -10.50700 -10.31714 -10.22398 -9.80985 -9.25586 -9.06725 -8.54490 -6.71473 -5.33596 1.04347 2.04577 2.28979 3.05962 3.06913 3.14025 3.20467 3.96232 4.08061 4.20635 4.63251 4.74616 4.89029 5.13505 5.38074 5.57416 5.74079 5.93939 6.05653 6.42894 6.74180 7.30974 7.81537 7.95860 8.88101 10.22779 Molecular weight = 272.98amu Principal moments of inertia in cm(-1) A = 0.026409 B = 0.005556 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.994418 B = 5038.616761 C = 5584.820425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.021 5.021 8 H 0.103 0.897 9 S 2.715 3.285 10 O -1.004 7.004 11 O -1.005 7.005 12 N -1.135 6.135 13 C 0.153 3.847 14 C -0.117 4.117 15 H 0.134 0.866 16 C -0.141 4.141 17 C 0.000 4.000 18 Cl -0.087 7.087 19 Cl -0.101 7.101 20 H 0.291 0.709 21 H 0.403 0.597 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.121 0.879 25 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.101 -10.876 3.893 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.154 5.154 8 H 0.121 0.879 9 S 2.815 3.185 10 O -0.995 6.995 11 O -0.995 6.995 12 N -0.890 5.890 13 C 0.025 3.975 14 C -0.138 4.138 15 H 0.152 0.848 16 C -0.178 4.178 17 C -0.052 4.052 18 Cl -0.060 7.060 19 Cl -0.075 7.075 20 H 0.101 0.899 21 H 0.234 0.766 22 H 0.104 0.896 23 H 0.094 0.906 24 H 0.139 0.861 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.105 -10.788 4.137 14.711 hybrid contribution 1.340 0.929 -0.279 1.654 sum 10.445 -9.859 3.858 14.873 Atomic orbital electron populations 1.69893 1.06779 1.30763 1.40051 1.24738 0.94455 1.00829 0.88455 0.86172 0.80210 0.80058 0.79188 1.19198 1.19973 1.18602 1.30538 1.06135 1.11814 1.66948 0.87909 1.00428 0.72016 0.73211 0.72874 1.93381 1.72922 1.87587 1.45591 1.93360 1.72784 1.87460 1.45896 1.56013 1.55612 1.51381 1.25947 1.20721 0.93458 0.92857 0.90437 1.23586 0.95499 0.98382 0.96283 0.84790 1.24157 0.92147 1.00194 1.01313 1.26845 0.85284 0.94631 0.98458 1.98765 1.95376 1.54555 1.57283 1.98740 1.48499 1.69495 1.90718 0.89866 0.76600 0.89582 0.90636 0.86092 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.57 13.19 55.43 0.73 -23.84 15 2 C 0.13 3.67 5.46 -17.82 -0.10 3.58 15 3 Si 0.92 20.39 29.54 -169.99 -5.02 15.37 15 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 15 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 15 7 C -1.02 -27.48 9.72 30.60 0.30 -27.18 15 8 H 0.10 2.52 7.81 -52.49 -0.41 2.11 15 9 S 2.71 69.45 5.02 -107.50 -0.54 68.91 15 10 O -1.00 -28.64 18.02 -57.17 -1.03 -29.67 15 11 O -1.01 -28.36 17.49 -57.17 -1.00 -29.36 15 12 N -1.13 -20.87 6.00 -10.61 -0.06 -20.93 15 13 C 0.15 2.41 5.59 -4.04 -0.02 2.39 15 14 C -0.12 -1.37 5.74 -90.58 -0.52 -1.89 15 15 H 0.13 1.35 7.98 -51.93 -0.41 0.94 15 16 C -0.14 -1.38 9.86 -26.69 -0.26 -1.64 15 17 C 0.00 0.00 3.61 -26.73 -0.10 -0.10 15 18 Cl -0.09 -1.10 28.23 -51.86 -1.46 -2.56 15 19 Cl -0.10 -1.09 29.29 -51.86 -1.52 -2.61 15 20 H 0.29 7.60 8.31 -40.82 -0.34 7.26 15 21 H 0.40 6.19 8.54 -34.47 -0.29 5.90 15 22 H 0.09 1.43 7.49 -51.93 -0.39 1.04 15 23 H 0.08 1.20 8.02 -51.93 -0.42 0.78 15 24 H 0.12 0.93 8.14 -51.93 -0.42 0.50 15 25 H 0.13 1.22 8.03 -51.93 -0.42 0.80 15 LS Contribution 272.42 15.07 4.11 4.11 Total: -1.00 -33.68 272.42 -8.40 -42.08 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -1.90 Total: 3.35 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -0.70 Total: -24.85 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.67 Total: -44.77 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: -2.03 Total: -59.03 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 69.45 SS G_CDS: -0.54 Total: 68.91 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -2.98 Total: -5.17 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.68 -8.40 -42.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379375471.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.422 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds