Wall clock time and date at job start Mon Mar 30 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99579 * 2 1 4 4 H 1.48501 * 109.47277 * 270.00287 * 3 2 1 5 5 H 1.48500 * 109.47077 * 30.00420 * 3 2 1 6 6 H 1.48508 * 109.46741 * 150.00220 * 3 2 1 7 7 C 1.37877 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99869 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99970 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40333 * 66.46230 * 9 7 2 11 11 O 1.42102 * 106.39981 * 293.53970 * 9 7 2 12 12 N 1.65601 * 107.21339 * 180.02562 * 9 7 2 13 13 C 1.46499 * 120.00123 * 65.00223 * 12 9 7 14 14 C 1.53001 * 109.47177 * 164.99835 * 13 12 9 15 15 H 1.09003 * 115.56659 * 29.30460 * 14 13 12 16 16 C 1.53079 * 117.51442 * 243.60930 * 14 13 12 17 17 C 1.52997 * 59.98332 * 252.52258 * 16 14 13 18 18 Cl 1.80299 * 117.50400 * 107.50110 * 17 16 14 19 19 Cl 1.80299 * 117.49560 * 252.49961 * 17 16 14 20 20 H 0.96999 * 120.00192 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99934 * 244.99894 * 12 9 7 22 22 H 1.08997 * 109.47456 * 44.99747 * 13 12 9 23 23 H 1.08997 * 109.46802 * 284.99389 * 13 12 9 24 24 H 1.08998 * 117.49992 * 145.03016 * 16 14 13 25 25 H 1.09001 * 117.50746 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4511 -2.7951 -1.2500 11 8 0.4520 -2.7955 1.2495 12 7 2.2485 -3.9353 -0.0005 13 6 3.1396 -4.1087 1.1493 14 6 3.8051 -5.4844 1.0760 15 1 3.9515 -5.8832 0.0722 16 6 3.4914 -6.4822 2.1938 17 6 4.8658 -5.8131 2.1284 18 17 5.2361 -4.5495 3.3601 19 17 6.2628 -6.8297 1.6130 20 1 -0.4850 0.8400 0.0004 21 1 2.3174 -4.5324 -0.7619 22 1 2.5625 -4.0329 2.0709 23 1 3.9056 -3.3334 1.1355 24 1 3.4317 -7.5368 1.9249 25 1 2.8113 -6.1582 2.9816 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379375471.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:35 Heat of formation + Delta-G solvation = -110.253252 kcal Electronic energy + Delta-G solvation = -14905.056679 eV Core-core repulsion = 11903.501338 eV Total energy + Delta-G solvation = -3001.555342 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 272.978 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.37267 -37.40077 -37.04137 -36.87023 -36.12774 -35.22005 -34.72827 -28.24155 -27.32388 -23.28562 -22.14934 -20.92523 -19.37438 -18.21908 -17.94508 -16.99762 -16.42126 -15.94324 -15.86740 -15.24888 -15.03738 -14.09517 -13.97952 -13.52342 -13.29309 -13.00678 -12.86793 -12.80295 -12.50316 -12.40881 -12.39121 -12.29866 -12.14453 -11.91450 -11.49428 -11.23742 -10.99119 -10.76164 -10.18952 -8.74473 -7.46782 0.14002 0.35754 1.17081 1.35298 1.35714 1.51471 2.15040 2.22951 2.59471 2.90172 3.23815 3.33953 3.71298 3.81310 4.17837 4.46298 4.60885 4.67482 4.70705 4.90495 5.11560 5.31506 5.91164 6.39642 6.80480 8.21880 Molecular weight = 272.98amu Principal moments of inertia in cm(-1) A = 0.026409 B = 0.005556 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.994418 B = 5038.616761 C = 5584.820425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.248 1.248 7 C -1.042 5.042 8 H 0.120 0.880 9 S 2.724 3.276 10 O -1.042 7.042 11 O -1.040 7.040 12 N -1.116 6.116 13 C 0.145 3.855 14 C -0.123 4.123 15 H 0.155 0.845 16 C -0.125 4.125 17 C -0.001 4.001 18 Cl -0.104 7.104 19 Cl -0.093 7.093 20 H 0.299 0.701 21 H 0.419 0.581 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.150 0.850 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.757 -11.296 3.901 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.805 3.195 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.171 1.171 7 C -1.175 5.175 8 H 0.138 0.862 9 S 2.824 3.176 10 O -1.032 7.032 11 O -1.029 7.029 12 N -0.877 5.877 13 C 0.019 3.981 14 C -0.144 4.144 15 H 0.173 0.827 16 C -0.162 4.162 17 C -0.054 4.054 18 Cl -0.077 7.077 19 Cl -0.066 7.066 20 H 0.109 0.891 21 H 0.254 0.746 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.168 0.832 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.762 -11.235 4.137 16.098 hybrid contribution 0.867 0.952 -0.278 1.318 sum 11.629 -10.283 3.859 15.995 Atomic orbital electron populations 1.69982 1.08689 1.32302 1.41466 1.25959 0.95332 1.05262 0.87588 0.85179 0.79219 0.75106 0.80015 1.17950 1.18787 1.17145 1.30937 1.07246 1.12739 1.66620 0.86178 0.99778 0.72459 0.73818 0.71523 1.93322 1.74685 1.88348 1.46845 1.93310 1.74403 1.88166 1.47069 1.55293 1.54844 1.49956 1.27567 1.20856 0.92871 0.95717 0.88675 1.23465 0.96100 0.96718 0.98068 0.82718 1.24343 0.90694 1.01230 0.99911 1.26892 0.86012 0.94687 0.97769 1.98766 1.95496 1.55474 1.57933 1.98745 1.48232 1.68997 1.90619 0.89126 0.74609 0.90707 0.90780 0.83225 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.63 13.19 21.45 0.28 -52.35 15 2 C 0.07 3.93 5.46 84.65 0.46 4.39 15 3 Si 0.99 40.84 29.54 68.60 2.03 42.87 15 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 15 5 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 6 H -0.25 -9.62 7.11 99.48 0.71 -8.91 15 7 C -1.04 -55.96 9.72 67.73 0.66 -55.30 15 8 H 0.12 5.79 7.81 -2.91 -0.02 5.77 15 9 S 2.72 140.74 5.02 -56.49 -0.28 140.45 15 10 O -1.04 -60.42 18.02 -128.00 -2.31 -62.73 15 11 O -1.04 -59.84 17.49 -128.00 -2.24 -62.08 15 12 N -1.12 -40.16 6.00 -187.50 -1.12 -41.29 15 13 C 0.15 4.43 5.59 86.38 0.48 4.91 15 14 C -0.12 -2.61 5.74 -10.77 -0.06 -2.67 15 15 H 0.16 2.63 7.98 -2.39 -0.02 2.61 15 16 C -0.12 -2.11 9.86 30.62 0.30 -1.81 15 17 C 0.00 -0.03 3.61 30.59 0.11 0.08 15 18 Cl -0.10 -2.49 28.23 -2.72 -0.08 -2.57 15 19 Cl -0.09 -1.77 29.29 -2.72 -0.08 -1.85 15 20 H 0.30 15.82 8.31 -92.71 -0.77 15.05 15 21 H 0.42 12.31 8.54 -96.74 -0.83 11.48 15 22 H 0.07 2.46 7.49 -2.39 -0.02 2.44 15 23 H 0.07 2.27 8.02 -2.39 -0.02 2.25 15 24 H 0.15 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.13 2.19 8.03 -2.39 -0.02 2.17 15 Total: -1.00 -72.87 272.42 -1.44 -74.31 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.41 Total: 15.62 kcal Atomic # 6 Polarization: -52.35 SS G_CDS: 1.95 Total: -50.39 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -0.84 Total: -93.64 kcal Atomic # 8 Polarization: -120.26 SS G_CDS: -4.54 Total: -124.81 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Atomic # 16 Polarization: 140.74 SS G_CDS: -0.28 Total: 140.45 kcal Atomic # 17 Polarization: -4.26 SS G_CDS: -0.16 Total: -4.42 kcal Total: -72.87 -1.44 -74.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379375471.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.943 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds