Wall clock time and date at job start Mon Mar 30 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81399 * 103.00107 * 2 1 4 4 C 1.53007 * 109.52170 * 64.89052 * 3 2 1 5 5 N 1.46895 * 109.46744 * 54.56702 * 4 3 2 6 6 C 1.46903 * 110.99745 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.47539 * 34.99857 * 6 5 4 8 8 C 1.53001 * 109.47066 * 274.99673 * 6 5 4 9 9 C 1.50704 * 109.47058 * 154.99843 * 6 5 4 10 10 H 1.07998 * 120.00380 * 0.02562 * 9 6 5 11 11 C 1.37883 * 119.99795 * 179.97438 * 9 6 5 12 12 N 1.31515 * 119.99925 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 119.99801 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.47407 * 59.99949 * 13 11 9 15 15 H 1.48504 * 109.47040 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47197 * 299.99922 * 13 11 9 17 17 C 1.53114 * 109.52312 * 185.01898 * 3 2 1 18 18 C 1.53175 * 109.20871 * 177.56237 * 17 3 2 19 19 N 1.46849 * 109.55565 * 300.86125 * 18 17 3 20 20 C 1.46899 * 110.99891 * 185.83719 * 19 18 17 21 21 C 1.46849 * 111.19658 * 61.74186 * 19 18 17 22 22 C 1.53035 * 109.52361 * 298.25551 * 21 19 18 23 23 H 1.08996 * 109.47227 * 185.04806 * 1 2 3 24 24 H 1.09004 * 109.46868 * 305.04411 * 1 2 3 25 25 H 1.08994 * 109.47274 * 65.04545 * 1 2 3 26 26 H 1.09001 * 109.47185 * 294.56463 * 4 3 2 27 27 H 1.09001 * 109.46963 * 174.56075 * 4 3 2 28 28 H 1.00895 * 111.00678 * 56.04802 * 5 4 3 29 29 H 1.08997 * 109.46994 * 180.02562 * 8 6 5 30 30 H 1.08997 * 109.47199 * 299.99918 * 8 6 5 31 31 H 1.08998 * 109.46997 * 60.00029 * 8 6 5 32 32 H 0.97001 * 119.99818 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.50357 * 297.55978 * 17 3 2 34 34 H 1.09001 * 109.50749 * 57.68616 * 17 3 2 35 35 H 1.08993 * 109.44852 * 180.82891 * 18 17 3 36 36 H 1.09001 * 109.43651 * 60.87850 * 18 17 3 37 37 H 1.09003 * 109.47000 * 295.79148 * 20 19 18 38 38 H 1.09002 * 109.47047 * 55.79008 * 20 19 18 39 39 H 1.08997 * 109.47300 * 175.79106 * 20 19 18 40 40 H 1.09001 * 109.45971 * 178.24428 * 21 19 18 41 41 H 1.09005 * 109.45688 * 58.27118 * 21 19 18 42 42 H 1.08999 * 109.50397 * 299.24403 * 22 21 19 43 43 H 1.09000 * 109.50296 * 179.12308 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.7408 2.4033 1.3058 5 7 2.3013 1.6651 2.4455 6 6 1.8591 2.2484 3.7192 7 1 0.8390 2.6178 3.6150 8 6 2.7846 3.4063 4.0984 9 6 1.9046 1.1955 4.7964 10 1 2.2298 0.1934 4.5588 11 6 1.5319 1.5118 6.0857 12 7 1.1373 2.7324 6.3755 13 14 1.5889 0.2068 7.4211 14 1 2.9789 -0.2963 7.5627 15 1 1.1418 0.7964 8.7087 16 1 0.6907 -0.9171 7.0536 17 6 3.7379 1.9426 -0.1263 18 6 4.0692 3.4369 -0.1868 19 7 3.3894 4.0448 -1.3378 20 6 3.7940 5.4467 -1.5079 21 6 1.9307 3.9293 -1.2146 22 6 1.5353 2.4512 -1.1855 23 1 -0.3633 -1.0236 0.0904 24 1 -0.3633 0.5901 0.8414 25 1 -0.3633 0.4335 -0.9317 26 1 0.6523 2.3660 1.3486 27 1 2.0708 3.4414 1.3477 28 1 3.3083 1.6301 2.3937 29 1 2.4568 3.8387 5.0437 30 1 3.8047 3.0369 4.2027 31 1 2.7517 4.1678 3.3193 32 1 0.8748 2.9548 7.2824 33 1 4.2292 1.4942 0.7372 34 1 4.0859 1.4559 -1.0373 35 1 5.1464 3.5658 -0.2916 36 1 3.7331 3.9204 0.7304 37 1 3.4692 6.0261 -0.6436 38 1 4.8789 5.5036 -1.5966 39 1 3.3341 5.8508 -2.4097 40 1 1.4547 4.4159 -2.0660 41 1 1.6049 4.4107 -0.2925 42 1 1.8487 1.9724 -2.1132 43 1 0.4539 2.3658 -1.0784 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381498370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:46 Heat of formation + Delta-G solvation = 3.010303 kcal Electronic energy + Delta-G solvation = -20384.415485 eV Core-core repulsion = 17590.546345 eV Total energy + Delta-G solvation = -2793.869140 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53857 -36.06201 -33.97815 -31.98007 -31.02444 -28.85730 -28.33735 -26.56447 -25.15859 -24.14215 -23.12661 -22.31078 -20.13296 -18.55934 -16.74546 -16.27694 -15.30513 -15.15729 -14.91496 -14.57838 -14.40569 -14.23652 -13.85554 -13.27569 -13.16379 -12.95566 -12.58593 -12.46673 -12.40133 -12.19450 -11.74960 -11.59981 -11.35690 -11.17441 -10.99042 -10.85480 -10.80782 -10.65679 -10.44950 -10.22194 -10.12924 -9.77585 -9.34179 -8.97326 -8.35210 -8.32421 -7.25276 -6.89141 -5.95586 -3.97959 2.12897 2.98474 3.37040 3.40349 3.44652 3.87469 4.46492 4.67937 4.78252 5.01263 5.08301 5.26591 5.28621 5.36021 5.37726 5.43737 5.46677 5.51488 5.56138 5.59890 5.70176 5.74459 5.77367 5.87979 5.98767 6.02347 6.09798 6.23542 6.25741 6.40748 6.66614 6.82435 6.98982 7.00637 7.09843 7.36931 7.74342 7.92980 8.30107 8.58086 8.65721 9.10334 9.67350 11.11588 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.005666 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.650841 B = 4940.419576 C = 5770.109961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.226 6.226 3 C -0.023 4.023 4 C 0.067 3.933 5 N -0.665 5.665 6 C 0.213 3.787 7 H 0.029 0.971 8 C -0.168 4.168 9 C -0.489 4.489 10 H 0.064 0.936 11 C 0.054 3.946 12 N -0.901 5.901 13 Si 0.897 3.103 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.278 1.278 17 C -0.091 4.091 18 C 0.056 3.944 19 N -0.541 5.541 20 C 0.025 3.975 21 C 0.056 3.944 22 C -0.105 4.105 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.026 0.974 28 H 0.324 0.676 29 H 0.088 0.912 30 H 0.027 0.973 31 H 0.000 1.000 32 H 0.259 0.741 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.025 0.975 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.080 0.920 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 2.783 -15.936 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S 0.004 5.996 3 C -0.133 4.133 4 C -0.064 4.064 5 N -0.295 5.295 6 C 0.105 3.895 7 H 0.046 0.954 8 C -0.227 4.227 9 C -0.528 4.528 10 H 0.082 0.918 11 C -0.146 4.146 12 N -0.541 5.541 13 Si 0.726 3.274 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.203 1.203 17 C -0.130 4.130 18 C -0.073 4.073 19 N -0.266 5.266 20 C -0.124 4.124 21 C -0.074 4.074 22 C -0.145 4.145 23 H 0.111 0.889 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.142 0.858 29 H 0.107 0.893 30 H 0.046 0.954 31 H 0.019 0.981 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.437 1.194 -16.174 16.400 hybrid contribution -0.649 1.804 1.669 2.542 sum 1.788 2.998 -14.504 14.919 Atomic orbital electron populations 1.23326 0.95548 1.05884 1.04208 1.86401 1.06255 1.09564 1.97380 1.22839 0.98771 0.94179 0.97553 1.22092 0.99363 0.94718 0.90265 1.60885 1.13344 1.53764 1.01547 1.19140 0.93856 0.91448 0.85024 0.95353 1.22439 0.99350 0.98934 1.01986 1.21135 1.42788 0.96729 0.92162 0.91810 1.24950 0.95638 0.95426 0.98596 1.69876 1.45898 1.18418 1.19912 0.86574 0.78407 0.81755 0.80712 1.20367 1.21589 1.20318 1.21418 0.92804 0.95496 1.03248 1.22188 0.98747 0.94703 0.91663 1.61965 1.06758 1.16366 1.41474 1.22341 1.01290 0.88201 1.00520 1.22137 0.87913 0.96740 1.00575 1.21914 0.99612 0.94830 0.98109 0.88874 0.90088 0.91572 0.92119 0.95612 0.85821 0.89311 0.95370 0.98098 0.93138 0.90116 0.90499 0.90519 0.94041 0.95674 0.91424 0.91504 0.90809 0.94313 0.90108 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 9.82 101.05 0.99 -0.67 16 2 S -0.23 -3.56 20.72 -107.50 -2.23 -5.79 16 3 C -0.02 -0.33 0.51 -90.49 -0.05 -0.38 16 4 C 0.07 1.18 3.66 -3.82 -0.01 1.16 16 5 N -0.67 -13.83 5.57 -107.95 -0.60 -14.43 16 6 C 0.21 5.31 2.57 -68.86 -0.18 5.13 16 7 H 0.03 0.79 7.80 -51.93 -0.40 0.38 16 8 C -0.17 -4.02 8.94 37.16 0.33 -3.68 16 9 C -0.49 -13.56 8.84 -34.44 -0.30 -13.86 16 10 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 11 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 12 N -0.90 -25.89 11.32 55.43 0.63 -25.27 16 13 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 C -0.09 -1.24 4.73 -26.58 -0.13 -1.37 16 18 C 0.06 0.72 5.22 -3.76 -0.02 0.70 16 19 N -0.54 -6.45 4.91 -242.87 -1.19 -7.64 16 20 C 0.02 0.25 9.59 60.06 0.58 0.82 16 21 C 0.06 0.66 5.22 -3.83 -0.02 0.64 16 22 C -0.10 -1.30 4.59 -26.65 -0.12 -1.42 16 23 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.08 1.24 7.07 -51.92 -0.37 0.87 16 25 H 0.07 0.76 7.26 -51.93 -0.38 0.39 16 26 H 0.06 1.13 6.95 -51.93 -0.36 0.77 16 27 H 0.03 0.46 4.24 -51.93 -0.22 0.24 16 28 H 0.32 6.57 6.71 -39.29 -0.26 6.30 16 29 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 30 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.00 0.00 7.45 -51.93 -0.39 -0.39 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.08 1.19 6.60 -51.93 -0.34 0.84 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.04 0.60 6.39 -51.93 -0.33 0.27 16 37 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.04 0.51 6.64 -51.93 -0.34 0.17 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.80 6.80 -51.93 -0.35 0.44 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -28.52 331.63 -9.85 -38.37 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.41 Total: 4.54 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 0.98 Total: -11.51 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -1.17 Total: -47.33 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.23 Total: -5.79 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.52 -9.85 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381498370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.381 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds