Wall clock time and date at job start Mon Mar 30 2020 05:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81399 * 103.00107 * 2 1 4 4 C 1.53007 * 109.52170 * 64.89052 * 3 2 1 5 5 N 1.46895 * 109.46744 * 54.56702 * 4 3 2 6 6 C 1.46903 * 110.99745 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.47539 * 34.99857 * 6 5 4 8 8 C 1.53001 * 109.47066 * 274.99673 * 6 5 4 9 9 C 1.50704 * 109.47058 * 154.99843 * 6 5 4 10 10 H 1.07998 * 120.00380 * 0.02562 * 9 6 5 11 11 C 1.37883 * 119.99795 * 179.97438 * 9 6 5 12 12 N 1.31515 * 119.99925 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 119.99801 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.47407 * 59.99949 * 13 11 9 15 15 H 1.48504 * 109.47040 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47197 * 299.99922 * 13 11 9 17 17 C 1.53114 * 109.52312 * 185.01898 * 3 2 1 18 18 C 1.53175 * 109.20871 * 177.56237 * 17 3 2 19 19 N 1.46849 * 109.55565 * 300.86125 * 18 17 3 20 20 C 1.46899 * 110.99891 * 185.83719 * 19 18 17 21 21 C 1.46849 * 111.19658 * 61.74186 * 19 18 17 22 22 C 1.53035 * 109.52361 * 298.25551 * 21 19 18 23 23 H 1.08996 * 109.47227 * 185.04806 * 1 2 3 24 24 H 1.09004 * 109.46868 * 305.04411 * 1 2 3 25 25 H 1.08994 * 109.47274 * 65.04545 * 1 2 3 26 26 H 1.09001 * 109.47185 * 294.56463 * 4 3 2 27 27 H 1.09001 * 109.46963 * 174.56075 * 4 3 2 28 28 H 1.00895 * 111.00678 * 56.04802 * 5 4 3 29 29 H 1.08997 * 109.46994 * 180.02562 * 8 6 5 30 30 H 1.08997 * 109.47199 * 299.99918 * 8 6 5 31 31 H 1.08998 * 109.46997 * 60.00029 * 8 6 5 32 32 H 0.97001 * 119.99818 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.50357 * 297.55978 * 17 3 2 34 34 H 1.09001 * 109.50749 * 57.68616 * 17 3 2 35 35 H 1.08993 * 109.44852 * 180.82891 * 18 17 3 36 36 H 1.09001 * 109.43651 * 60.87850 * 18 17 3 37 37 H 1.09003 * 109.47000 * 295.79148 * 20 19 18 38 38 H 1.09002 * 109.47047 * 55.79008 * 20 19 18 39 39 H 1.08997 * 109.47300 * 175.79106 * 20 19 18 40 40 H 1.09001 * 109.45971 * 178.24428 * 21 19 18 41 41 H 1.09005 * 109.45688 * 58.27118 * 21 19 18 42 42 H 1.08999 * 109.50397 * 299.24403 * 22 21 19 43 43 H 1.09000 * 109.50296 * 179.12308 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.7408 2.4033 1.3058 5 7 2.3013 1.6651 2.4455 6 6 1.8591 2.2484 3.7192 7 1 0.8390 2.6178 3.6150 8 6 2.7846 3.4063 4.0984 9 6 1.9046 1.1955 4.7964 10 1 2.2298 0.1934 4.5588 11 6 1.5319 1.5118 6.0857 12 7 1.1373 2.7324 6.3755 13 14 1.5889 0.2068 7.4211 14 1 2.9789 -0.2963 7.5627 15 1 1.1418 0.7964 8.7087 16 1 0.6907 -0.9171 7.0536 17 6 3.7379 1.9426 -0.1263 18 6 4.0692 3.4369 -0.1868 19 7 3.3894 4.0448 -1.3378 20 6 3.7940 5.4467 -1.5079 21 6 1.9307 3.9293 -1.2146 22 6 1.5353 2.4512 -1.1855 23 1 -0.3633 -1.0236 0.0904 24 1 -0.3633 0.5901 0.8414 25 1 -0.3633 0.4335 -0.9317 26 1 0.6523 2.3660 1.3486 27 1 2.0708 3.4414 1.3477 28 1 3.3083 1.6301 2.3937 29 1 2.4568 3.8387 5.0437 30 1 3.8047 3.0369 4.2027 31 1 2.7517 4.1678 3.3193 32 1 0.8748 2.9548 7.2824 33 1 4.2292 1.4942 0.7372 34 1 4.0859 1.4559 -1.0373 35 1 5.1464 3.5658 -0.2916 36 1 3.7331 3.9204 0.7304 37 1 3.4692 6.0261 -0.6436 38 1 4.8789 5.5036 -1.5966 39 1 3.3341 5.8508 -2.4097 40 1 1.4547 4.4159 -2.0660 41 1 1.6049 4.4107 -0.2925 42 1 1.8487 1.9724 -2.1132 43 1 0.4539 2.3658 -1.0784 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381498370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:45 Heat of formation + Delta-G solvation = -15.213593 kcal Electronic energy + Delta-G solvation = -20385.205733 eV Core-core repulsion = 17590.546345 eV Total energy + Delta-G solvation = -2794.659388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65335 -37.67545 -35.43816 -33.78826 -32.08732 -30.43535 -29.56039 -27.67791 -27.24670 -25.56204 -24.17490 -23.36896 -22.08467 -19.78017 -18.32383 -17.84690 -16.84795 -16.45385 -16.14582 -15.87147 -15.75180 -15.52852 -15.17385 -14.58641 -14.45417 -14.39830 -14.09321 -13.80157 -13.54941 -13.31804 -13.14757 -13.00674 -12.84955 -12.74766 -12.58151 -12.34681 -12.19281 -12.15052 -12.09660 -11.86942 -11.59756 -11.35450 -10.99403 -10.54085 -10.47954 -9.33827 -8.87704 -8.25001 -8.08839 -6.19291 0.94165 1.43018 1.44523 1.52337 1.80768 2.44451 2.95044 3.19363 3.49484 3.68326 3.73415 3.99852 4.13457 4.25024 4.34774 4.36864 4.40436 4.42822 4.52252 4.58978 4.61870 4.65698 4.72681 4.77233 4.82289 4.85306 4.90857 4.95311 5.01865 5.04788 5.08896 5.16725 5.24700 5.39782 5.68846 5.81547 6.04429 6.09131 6.28049 6.66437 6.83491 6.96153 7.50698 8.96278 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.005666 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.650841 B = 4940.419576 C = 5770.109961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.266 6.266 3 C -0.010 4.010 4 C 0.076 3.924 5 N -0.665 5.665 6 C 0.220 3.780 7 H -0.005 1.005 8 C -0.153 4.153 9 C -0.508 4.508 10 H 0.054 0.946 11 C 0.009 3.991 12 N -0.925 5.925 13 Si 0.958 3.042 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.087 4.087 18 C 0.061 3.939 19 N -0.543 5.543 20 C 0.024 3.976 21 C 0.057 3.943 22 C -0.098 4.098 23 H 0.103 0.897 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.025 0.975 28 H 0.328 0.672 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.020 0.980 37 H 0.017 0.983 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.022 0.978 42 H 0.089 0.911 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 2.717 -17.317 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.036 6.036 3 C -0.120 4.120 4 C -0.056 4.056 5 N -0.295 5.295 6 C 0.112 3.888 7 H 0.013 0.987 8 C -0.212 4.212 9 C -0.547 4.547 10 H 0.072 0.928 11 C -0.189 4.189 12 N -0.565 5.565 13 Si 0.784 3.216 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.126 4.126 18 C -0.068 4.068 19 N -0.267 5.267 20 C -0.124 4.124 21 C -0.073 4.073 22 C -0.138 4.138 23 H 0.121 0.879 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.146 0.854 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.040 0.960 42 H 0.108 0.892 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.845 1.129 -17.575 17.840 hybrid contribution -0.794 1.845 2.053 2.872 sum 2.052 2.974 -15.523 15.938 Atomic orbital electron populations 1.23330 0.93594 1.06423 1.04634 1.86523 1.08557 1.11098 1.97401 1.22775 0.99609 0.93018 0.96637 1.22035 0.98333 0.94602 0.90609 1.60746 1.13657 1.54133 1.01014 1.18871 0.92348 0.91173 0.86434 0.98678 1.22223 0.99042 0.98897 1.01066 1.21400 1.43047 0.96897 0.93351 0.92806 1.25686 0.95226 0.97319 1.00639 1.70002 1.46292 1.19910 1.20322 0.85609 0.78579 0.79281 0.78102 1.19683 1.21052 1.20060 1.21392 0.91904 0.96297 1.02999 1.22126 0.99735 0.93741 0.91225 1.62012 1.06589 1.17599 1.40526 1.22422 1.02177 0.86878 1.00928 1.22159 0.88176 0.96180 1.00741 1.21883 0.99731 0.95064 0.97125 0.87875 0.92134 0.89029 0.93529 0.95723 0.85352 0.92041 0.94989 0.96258 0.93112 0.91446 0.89695 0.89009 0.96134 0.96407 0.90351 0.89869 0.88601 0.95954 0.89208 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.94 9.82 113.37 1.11 -1.83 16 2 S -0.27 -8.18 20.72 -56.49 -1.17 -9.35 16 3 C -0.01 -0.28 0.51 -10.71 -0.01 -0.29 16 4 C 0.08 2.66 3.66 86.31 0.32 2.97 16 5 N -0.67 -28.04 5.57 -495.44 -2.76 -30.80 16 6 C 0.22 11.23 2.57 44.17 0.11 11.34 16 7 H 0.00 -0.27 7.80 -2.39 -0.02 -0.29 16 8 C -0.15 -7.40 8.94 71.98 0.64 -6.76 16 9 C -0.51 -28.59 8.84 25.60 0.23 -28.36 16 10 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 11 C 0.01 0.51 5.30 84.66 0.45 0.96 16 12 N -0.92 -53.85 11.32 21.45 0.24 -53.61 16 13 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 C -0.09 -2.28 4.73 30.69 0.15 -2.13 16 18 C 0.06 1.47 5.22 86.37 0.45 1.92 16 19 N -0.54 -11.71 4.91 -922.30 -4.53 -16.24 16 20 C 0.02 0.42 9.59 127.69 1.22 1.64 16 21 C 0.06 1.24 5.22 86.32 0.45 1.69 16 22 C -0.10 -2.25 4.59 30.65 0.14 -2.11 16 23 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.06 1.85 7.07 -2.39 -0.02 1.83 16 25 H 0.09 1.93 7.26 -2.39 -0.02 1.91 16 26 H 0.05 1.76 6.95 -2.39 -0.02 1.75 16 27 H 0.02 0.89 4.24 -2.39 -0.01 0.88 16 28 H 0.33 13.40 6.71 -89.70 -0.60 12.79 16 29 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 30 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 31 H 0.02 0.82 7.45 -2.39 -0.02 0.80 16 32 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.07 1.95 6.60 -2.39 -0.02 1.93 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 1.92 8.08 -2.39 -0.02 1.91 16 36 H 0.02 0.58 6.39 -2.39 -0.02 0.57 16 37 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.10 1.68 8.12 -2.39 -0.02 1.66 16 41 H 0.02 0.56 6.64 -2.38 -0.02 0.55 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 1.58 6.80 -2.39 -0.02 1.56 16 Total: -1.00 -60.95 331.63 -0.55 -61.50 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.38 Total: 22.72 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 5.27 Total: -20.96 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -7.05 Total: -100.64 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.17 Total: -9.35 kcal Total: -60.95 -0.55 -61.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381498370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.288 kcal (2) G-P(sol) polarization free energy of solvation -60.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds