Wall clock time and date at job start Mon Mar 30 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47095 * 2 1 4 4 C 1.50695 * 109.47184 * 239.99970 * 2 1 3 5 5 H 1.08000 * 120.00589 * 240.00150 * 4 2 1 6 6 C 1.37882 * 120.00115 * 60.00029 * 4 2 1 7 7 N 1.31512 * 119.99599 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00224 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47038 * 89.99811 * 8 6 4 10 10 H 1.48499 * 109.47257 * 209.99658 * 8 6 4 11 11 H 1.48501 * 109.47228 * 329.99605 * 8 6 4 12 12 N 1.46901 * 109.47491 * 119.99957 * 2 1 3 13 13 C 1.46904 * 110.99889 * 275.00511 * 12 2 1 14 14 C 1.53001 * 109.47017 * 174.78886 * 13 12 2 15 15 C 1.53002 * 109.47049 * 174.43958 * 14 13 12 16 16 C 1.52994 * 109.46892 * 294.43957 * 14 13 12 17 17 N 1.46898 * 109.47087 * 54.44043 * 14 13 12 18 18 C 1.46466 * 110.99809 * 184.16276 * 17 14 13 19 19 C 1.53249 * 109.85953 * 162.23372 * 18 17 14 20 20 S 1.81906 * 108.50788 * 62.00373 * 19 18 17 21 21 C 1.81901 * 101.91130 * 308.69602 * 20 19 18 22 22 C 1.46466 * 111.00286 * 58.18151 * 17 14 13 23 23 H 1.09002 * 109.47415 * 59.99910 * 1 2 3 24 24 H 1.09007 * 109.47228 * 299.99755 * 1 2 3 25 25 H 1.09001 * 109.47095 * 180.02562 * 1 2 3 26 26 H 0.97008 * 119.99993 * 180.02562 * 7 6 4 27 27 H 1.00899 * 111.00020 * 151.04742 * 12 2 1 28 28 H 1.09007 * 109.46582 * 294.78390 * 13 12 2 29 29 H 1.08997 * 109.47341 * 54.78345 * 13 12 2 30 30 H 1.08999 * 109.47257 * 65.15951 * 15 14 13 31 31 H 1.08999 * 109.46832 * 185.16020 * 15 14 13 32 32 H 1.09000 * 109.46876 * 305.15940 * 15 14 13 33 33 H 1.08998 * 109.47214 * 67.71570 * 16 14 13 34 34 H 1.09006 * 109.47192 * 187.71624 * 16 14 13 35 35 H 1.08995 * 109.47340 * 307.71166 * 16 14 13 36 36 H 1.09005 * 109.40629 * 282.35098 * 18 17 14 37 37 H 1.09000 * 109.41148 * 42.11503 * 18 17 14 38 38 H 1.08993 * 109.63528 * 302.29680 * 19 18 17 39 39 H 1.09000 * 109.79435 * 181.80326 * 19 18 17 40 40 H 1.09008 * 109.62916 * 291.59928 * 21 20 19 41 41 H 1.08991 * 109.79550 * 171.10899 * 21 20 19 42 42 H 1.09008 * 109.40807 * 317.88412 * 22 17 14 43 43 H 1.08998 * 109.40754 * 77.64326 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7123 12 7 2.0198 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.4707 -0.5602 3.6029 15 6 2.6713 0.4114 4.7677 16 6 1.3576 -1.5506 3.9508 17 7 3.7193 -1.2936 3.3563 18 6 4.0704 -2.1329 4.5041 19 6 5.0891 -3.1962 4.0793 20 16 6.5986 -2.3552 3.5111 21 6 5.9341 -1.1625 2.3091 22 6 4.7991 -0.3793 2.9776 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.7081 1.1609 -3.4844 27 1 2.9174 -1.1204 1.0287 28 1 2.8275 0.9949 2.1553 29 1 1.1076 0.6870 2.4950 30 1 1.7219 0.8888 5.0103 31 1 3.0362 -0.1347 5.6375 32 1 3.3988 1.1723 4.4849 33 1 1.3068 -2.3240 3.1844 34 1 1.5685 -2.0095 4.9167 35 1 0.4046 -1.0239 3.9992 36 1 4.5016 -1.5113 5.2889 37 1 3.1731 -2.6221 4.8831 38 1 4.6762 -3.7954 3.2679 39 1 5.3255 -3.8401 4.9264 40 1 5.5489 -1.6951 1.4395 41 1 6.7204 -0.4746 1.9984 42 1 4.4149 0.3665 2.2816 43 1 5.1796 0.1205 3.8684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381773445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:05 Heat of formation + Delta-G solvation = 6.386691 kcal Electronic energy + Delta-G solvation = -20497.164179 eV Core-core repulsion = 17703.441450 eV Total energy + Delta-G solvation = -2793.722729 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.55543 -35.63699 -33.70677 -32.10939 -31.49120 -28.47680 -28.17433 -27.20381 -25.34082 -24.35140 -22.84761 -21.74542 -19.68993 -18.84572 -16.78391 -16.49963 -15.76083 -15.25298 -14.82474 -14.48749 -14.15888 -14.08138 -13.65486 -13.39849 -13.26421 -12.84874 -12.72191 -12.46247 -12.18555 -11.83683 -11.75764 -11.52017 -11.40216 -11.19189 -11.00794 -10.89667 -10.70950 -10.61472 -10.48852 -10.11013 -10.05045 -9.73567 -9.63426 -8.79905 -8.44621 -8.21007 -7.64483 -7.11746 -6.00381 -4.06106 1.84436 2.56454 3.30996 3.37467 3.40685 3.79299 4.42017 4.81683 4.85094 4.97951 5.06368 5.18296 5.25345 5.28228 5.30901 5.33011 5.39495 5.57182 5.68047 5.72813 5.78965 5.83783 5.87803 5.98973 6.05661 6.13783 6.19480 6.29163 6.33285 6.68288 6.91241 7.16652 7.20329 7.21337 7.30020 7.55801 7.81949 7.95261 8.32588 8.50280 8.77771 9.07824 9.59990 11.05911 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.005745 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.555330 B = 4872.241008 C = 5856.082085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.211 3.789 3 H -0.005 1.005 4 C -0.513 4.513 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.676 5.676 13 C 0.074 3.926 14 C 0.116 3.884 15 C -0.179 4.179 16 C -0.127 4.127 17 N -0.528 5.528 18 C 0.052 3.948 19 C -0.071 4.071 20 S -0.290 6.290 21 C -0.069 4.069 22 C 0.051 3.949 23 H 0.078 0.922 24 H 0.001 0.999 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.339 0.661 28 H 0.015 0.985 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.804 -3.095 14.859 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.103 3.897 3 H 0.013 0.987 4 C -0.552 4.552 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.308 5.308 13 C -0.057 4.057 14 C 0.027 3.973 15 C -0.238 4.238 16 C -0.185 4.185 17 N -0.253 5.253 18 C -0.077 4.077 19 C -0.219 4.219 20 S -0.064 6.064 21 C -0.218 4.218 22 C -0.079 4.079 23 H 0.097 0.903 24 H 0.020 0.980 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.157 0.843 28 H 0.033 0.967 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.104 -3.714 14.781 16.418 hybrid contribution 0.011 0.902 -0.848 1.238 sum 6.115 -2.813 13.933 15.474 Atomic orbital electron populations 1.21699 0.98110 0.99194 0.99079 1.19075 0.92462 0.92124 0.85999 0.98690 1.21261 1.31186 1.12324 0.90443 0.92304 1.24913 0.95131 0.94983 0.98993 1.69901 1.36812 1.22973 1.23331 0.86560 0.79247 0.79347 0.82606 1.20669 1.21369 1.19945 1.60560 1.32973 1.32132 1.05098 1.21965 0.99266 0.93368 0.91086 1.21125 0.89099 0.92835 0.94249 1.22496 1.02269 1.00119 0.98949 1.21769 0.96683 0.99647 1.00376 1.61253 1.03134 1.23857 1.37053 1.22268 0.98662 0.94801 0.91987 1.23481 0.94635 0.99592 1.04214 1.86738 1.17152 1.47617 1.54895 1.23516 1.00271 0.98808 0.99204 1.22289 0.91175 0.94669 0.99744 0.90332 0.97952 0.95045 0.93034 0.84262 0.96712 0.91511 0.91945 0.92743 0.92752 0.90233 0.93981 0.92440 0.93948 0.89148 0.88841 0.88120 0.88471 0.87879 0.88964 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 9.19 37.16 0.34 -2.69 16 2 C 0.21 5.26 2.60 -68.87 -0.18 5.08 16 3 H 0.00 -0.12 7.86 -51.93 -0.41 -0.53 16 4 C -0.51 -13.97 8.59 -34.44 -0.30 -14.27 16 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 8 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.68 -13.83 5.86 -107.95 -0.63 -14.47 16 13 C 0.07 1.26 3.86 -3.82 -0.01 1.25 16 14 C 0.12 1.57 0.47 -131.60 -0.06 1.51 16 15 C -0.18 -2.07 7.87 37.16 0.29 -1.78 16 16 C -0.13 -1.68 7.73 37.15 0.29 -1.39 16 17 N -0.53 -6.91 3.42 -219.38 -0.75 -7.66 16 18 C 0.05 0.59 4.44 -3.93 -0.02 0.57 16 19 C -0.07 -0.79 6.69 37.29 0.25 -0.54 16 20 S -0.29 -3.70 22.40 -107.50 -2.41 -6.11 16 21 C -0.07 -0.90 6.69 37.29 0.25 -0.65 16 22 C 0.05 0.66 4.12 -3.93 -0.02 0.64 16 23 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 24 H 0.00 0.03 7.39 -51.93 -0.38 -0.35 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 27 H 0.34 7.04 7.28 -39.29 -0.29 6.75 16 28 H 0.02 0.26 6.32 -51.92 -0.33 -0.07 16 29 H 0.07 1.19 7.32 -51.93 -0.38 0.81 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.58 6.67 -51.93 -0.35 0.23 16 32 H 0.05 0.64 7.14 -51.93 -0.37 0.27 16 33 H 0.08 1.22 7.98 -51.93 -0.41 0.80 16 34 H 0.04 0.46 6.42 -51.93 -0.33 0.13 16 35 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.04 0.48 7.02 -51.93 -0.36 0.11 16 37 H 0.09 0.95 5.53 -51.93 -0.29 0.66 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 1.39 8.14 -51.92 -0.42 0.97 16 41 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.34 5.58 -51.92 -0.29 1.05 16 43 H 0.04 0.54 7.24 -51.93 -0.38 0.17 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -27.64 330.12 -9.85 -37.49 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.38 Total: 4.95 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 0.74 Total: -10.67 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.76 Total: -46.94 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -2.41 Total: -6.11 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.64 -9.85 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381773445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.875 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds