Wall clock time and date at job start Mon Mar 30 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47095 * 2 1 4 4 C 1.50695 * 109.47184 * 239.99970 * 2 1 3 5 5 H 1.08000 * 120.00589 * 240.00150 * 4 2 1 6 6 C 1.37882 * 120.00115 * 60.00029 * 4 2 1 7 7 N 1.31512 * 119.99599 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00224 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47038 * 89.99811 * 8 6 4 10 10 H 1.48499 * 109.47257 * 209.99658 * 8 6 4 11 11 H 1.48501 * 109.47228 * 329.99605 * 8 6 4 12 12 N 1.46901 * 109.47491 * 119.99957 * 2 1 3 13 13 C 1.46904 * 110.99889 * 275.00511 * 12 2 1 14 14 C 1.53001 * 109.47017 * 174.78886 * 13 12 2 15 15 C 1.53002 * 109.47049 * 174.43958 * 14 13 12 16 16 C 1.52994 * 109.46892 * 294.43957 * 14 13 12 17 17 N 1.46898 * 109.47087 * 54.44043 * 14 13 12 18 18 C 1.46466 * 110.99809 * 184.16276 * 17 14 13 19 19 C 1.53249 * 109.85953 * 162.23372 * 18 17 14 20 20 S 1.81906 * 108.50788 * 62.00373 * 19 18 17 21 21 C 1.81901 * 101.91130 * 308.69602 * 20 19 18 22 22 C 1.46466 * 111.00286 * 58.18151 * 17 14 13 23 23 H 1.09002 * 109.47415 * 59.99910 * 1 2 3 24 24 H 1.09007 * 109.47228 * 299.99755 * 1 2 3 25 25 H 1.09001 * 109.47095 * 180.02562 * 1 2 3 26 26 H 0.97008 * 119.99993 * 180.02562 * 7 6 4 27 27 H 1.00899 * 111.00020 * 151.04742 * 12 2 1 28 28 H 1.09007 * 109.46582 * 294.78390 * 13 12 2 29 29 H 1.08997 * 109.47341 * 54.78345 * 13 12 2 30 30 H 1.08999 * 109.47257 * 65.15951 * 15 14 13 31 31 H 1.08999 * 109.46832 * 185.16020 * 15 14 13 32 32 H 1.09000 * 109.46876 * 305.15940 * 15 14 13 33 33 H 1.08998 * 109.47214 * 67.71570 * 16 14 13 34 34 H 1.09006 * 109.47192 * 187.71624 * 16 14 13 35 35 H 1.08995 * 109.47340 * 307.71166 * 16 14 13 36 36 H 1.09005 * 109.40629 * 282.35098 * 18 17 14 37 37 H 1.09000 * 109.41148 * 42.11503 * 18 17 14 38 38 H 1.08993 * 109.63528 * 302.29680 * 19 18 17 39 39 H 1.09000 * 109.79435 * 181.80326 * 19 18 17 40 40 H 1.09008 * 109.62916 * 291.59928 * 21 20 19 41 41 H 1.08991 * 109.79550 * 171.10899 * 21 20 19 42 42 H 1.09008 * 109.40807 * 317.88412 * 22 17 14 43 43 H 1.08998 * 109.40754 * 77.64326 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7123 12 7 2.0198 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.4707 -0.5602 3.6029 15 6 2.6713 0.4114 4.7677 16 6 1.3576 -1.5506 3.9508 17 7 3.7193 -1.2936 3.3563 18 6 4.0704 -2.1329 4.5041 19 6 5.0891 -3.1962 4.0793 20 16 6.5986 -2.3552 3.5111 21 6 5.9341 -1.1625 2.3091 22 6 4.7991 -0.3793 2.9776 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.7081 1.1609 -3.4844 27 1 2.9174 -1.1204 1.0287 28 1 2.8275 0.9949 2.1553 29 1 1.1076 0.6870 2.4950 30 1 1.7219 0.8888 5.0103 31 1 3.0362 -0.1347 5.6375 32 1 3.3988 1.1723 4.4849 33 1 1.3068 -2.3240 3.1844 34 1 1.5685 -2.0095 4.9167 35 1 0.4046 -1.0239 3.9992 36 1 4.5016 -1.5113 5.2889 37 1 3.1731 -2.6221 4.8831 38 1 4.6762 -3.7954 3.2679 39 1 5.3255 -3.8401 4.9264 40 1 5.5489 -1.6951 1.4395 41 1 6.7204 -0.4746 1.9984 42 1 4.4149 0.3665 2.2816 43 1 5.1796 0.1205 3.8684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381773445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:05 Heat of formation + Delta-G solvation = -10.341066 kcal Electronic energy + Delta-G solvation = -20497.889549 eV Core-core repulsion = 17703.441450 eV Total energy + Delta-G solvation = -2794.448099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66339 -37.34515 -35.10659 -33.76681 -32.61227 -30.21900 -29.23523 -28.20398 -27.36160 -25.84641 -23.94145 -22.80061 -21.63845 -19.97516 -18.45975 -17.79902 -16.91880 -16.81485 -16.34617 -15.75976 -15.49184 -15.25816 -14.99300 -14.71424 -14.45997 -14.25190 -13.81760 -13.69762 -13.46029 -13.39927 -12.92487 -12.86276 -12.71465 -12.65085 -12.57747 -12.34797 -12.24230 -12.17148 -12.15450 -11.86261 -11.56304 -11.18907 -10.83728 -10.62921 -10.54484 -9.23255 -8.85585 -8.65701 -8.11636 -6.24775 0.87144 1.41370 1.42512 1.52284 1.59061 2.41941 2.77458 3.17030 3.63322 3.82575 3.92906 4.01251 4.11826 4.20947 4.27936 4.37869 4.40152 4.45400 4.59764 4.66104 4.72225 4.78887 4.86135 4.89936 4.90944 5.00789 5.01598 5.07804 5.11687 5.13006 5.24529 5.27453 5.51968 5.59636 5.70396 5.90844 6.17528 6.21227 6.26879 6.58497 6.87306 7.12443 7.45940 8.93807 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.005745 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.555330 B = 4872.241008 C = 5856.082085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.217 3.783 3 H -0.038 1.038 4 C -0.530 4.530 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.667 5.667 13 C 0.075 3.925 14 C 0.123 3.877 15 C -0.172 4.172 16 C -0.122 4.122 17 N -0.541 5.541 18 C 0.055 3.945 19 C -0.064 4.064 20 S -0.303 6.303 21 C -0.066 4.066 22 C 0.058 3.942 23 H 0.053 0.947 24 H 0.020 0.980 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.337 0.663 28 H 0.008 0.992 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.072 0.928 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.324 -4.090 16.366 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 H -0.021 1.021 4 C -0.569 4.569 5 H 0.073 0.927 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.299 5.299 13 C -0.055 4.055 14 C 0.034 3.966 15 C -0.231 4.231 16 C -0.180 4.180 17 N -0.266 5.266 18 C -0.073 4.073 19 C -0.212 4.212 20 S -0.078 6.078 21 C -0.215 4.215 22 C -0.071 4.071 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.155 0.845 28 H 0.026 0.974 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.143 0.857 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.090 0.910 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.629 -4.716 16.310 18.226 hybrid contribution -0.147 1.215 -1.278 1.769 sum 6.482 -3.501 15.033 16.741 Atomic orbital electron populations 1.21506 0.97939 0.98643 0.98715 1.18871 0.92539 0.90418 0.87380 1.02059 1.21558 1.31286 1.12367 0.91665 0.92650 1.25686 0.95283 0.95653 1.01885 1.70027 1.37647 1.24119 1.23989 0.85565 0.78858 0.78254 0.78990 1.20222 1.20969 1.19319 1.60483 1.32780 1.32251 1.04342 1.22027 0.98752 0.93287 0.91484 1.20981 0.89566 0.93119 0.92920 1.22413 1.02661 0.99630 0.98400 1.21715 0.96400 0.98830 1.01036 1.61204 1.02920 1.24037 1.38480 1.22308 0.99239 0.94522 0.91259 1.23544 0.93497 0.99508 1.04675 1.86785 1.18597 1.47744 1.54675 1.23445 1.00480 0.98936 0.98642 1.22167 0.91113 0.94281 0.99547 0.92838 0.96112 0.95467 0.92969 0.84473 0.97368 0.92339 0.91328 0.90941 0.93102 0.92560 0.91196 0.92631 0.93122 0.87846 0.89828 0.85717 0.90388 0.87065 0.90999 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.50 9.19 71.98 0.66 -4.84 16 2 C 0.22 11.04 2.60 44.17 0.11 11.16 16 3 H -0.04 -2.16 7.86 -2.39 -0.02 -2.18 16 4 C -0.53 -29.30 8.59 25.60 0.22 -29.08 16 5 H 0.06 3.03 7.62 -2.91 -0.02 3.01 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.28 11.32 21.45 0.24 -53.04 16 8 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 N -0.67 -27.65 5.86 -495.44 -2.90 -30.55 16 13 C 0.07 2.55 3.86 86.30 0.33 2.88 16 14 C 0.12 3.14 0.47 3.53 0.00 3.14 16 15 C -0.17 -3.55 7.87 71.98 0.57 -2.98 16 16 C -0.12 -2.97 7.73 71.98 0.56 -2.41 16 17 N -0.54 -13.38 3.42 -848.00 -2.90 -16.28 16 18 C 0.06 1.09 4.44 86.47 0.38 1.47 16 19 C -0.06 -1.27 6.69 72.07 0.48 -0.79 16 20 S -0.30 -7.29 22.40 -56.49 -1.27 -8.56 16 21 C -0.07 -1.68 6.69 72.07 0.48 -1.20 16 22 C 0.06 1.48 4.12 86.47 0.36 1.83 16 23 H 0.05 2.95 6.07 -2.39 -0.01 2.94 16 24 H 0.02 0.91 7.39 -2.38 -0.02 0.90 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 27 H 0.34 14.21 7.28 -89.70 -0.65 13.56 16 28 H 0.01 0.30 6.32 -2.38 -0.02 0.28 16 29 H 0.06 2.08 7.32 -2.39 -0.02 2.06 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.27 6.67 -2.39 -0.02 1.25 16 32 H 0.05 1.09 7.14 -2.39 -0.02 1.08 16 33 H 0.06 1.64 7.98 -2.39 -0.02 1.62 16 34 H 0.07 1.30 6.42 -2.38 -0.02 1.29 16 35 H 0.05 1.36 8.12 -2.39 -0.02 1.34 16 36 H 0.05 0.95 7.02 -2.38 -0.02 0.93 16 37 H 0.10 1.79 5.53 -2.39 -0.01 1.78 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.07 2.12 5.58 -2.38 -0.01 2.10 16 43 H 0.05 1.23 7.24 -2.39 -0.02 1.21 16 Total: -1.00 -59.32 330.12 0.14 -59.18 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.33 Total: 22.86 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 4.61 Total: -19.59 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -5.56 Total: -99.87 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -7.29 SS G_CDS: -1.27 Total: -8.56 kcal Total: -59.32 0.14 -59.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381773445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.842 kcal (2) G-P(sol) polarization free energy of solvation -59.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds