Wall clock time and date at job start Mon Mar 30 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99918 * 2 1 4 4 H 1.48500 * 109.46630 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46899 * 299.99636 * 3 2 1 6 6 H 1.48496 * 109.47277 * 59.99926 * 3 2 1 7 7 C 1.37872 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00071 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.46748 * 180.02562 * 9 7 2 11 11 C 1.42910 * 113.99777 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47108 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47057 * 65.00532 * 12 11 10 14 14 C 1.46904 * 111.00145 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46861 * 179.97438 * 14 13 12 16 16 O 1.21276 * 120.00509 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99389 * 180.02562 * 15 14 13 18 18 C 1.47164 * 120.94464 * 359.97438 * 17 15 14 19 19 C 1.53300 * 108.37481 * 230.47489 * 18 17 15 20 20 O 1.42961 * 109.26618 * 307.77372 * 19 18 17 21 21 C 1.42967 * 114.16831 * 62.55217 * 20 19 18 22 22 C 1.47157 * 120.97899 * 180.02562 * 17 15 14 23 23 H 0.97002 * 119.99909 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46982 * 60.00174 * 9 7 2 25 25 H 1.09003 * 109.46742 * 300.00236 * 9 7 2 26 26 H 1.08999 * 109.46769 * 59.99782 * 11 10 9 27 27 H 1.09001 * 109.47176 * 300.00231 * 11 10 9 28 28 H 1.08995 * 109.47288 * 305.00497 * 12 11 10 29 29 H 1.08999 * 109.47062 * 185.00118 * 12 11 10 30 30 H 1.00900 * 111.00325 * 56.03868 * 13 12 11 31 31 H 1.09000 * 109.46530 * 60.00089 * 14 13 12 32 32 H 1.08994 * 109.47051 * 300.00147 * 14 13 12 33 33 H 1.08996 * 109.64217 * 110.78153 * 18 17 15 34 34 H 1.08999 * 109.72598 * 350.21805 * 18 17 15 35 35 H 1.09002 * 109.51290 * 187.82368 * 19 18 17 36 36 H 1.08997 * 109.51158 * 67.72466 * 19 18 17 37 37 H 1.09005 * 109.50496 * 57.34540 * 21 20 19 38 38 H 1.08995 * 109.51193 * 177.44508 * 21 20 19 39 39 H 1.09004 * 109.67827 * 9.75528 * 22 17 15 40 40 H 1.09000 * 109.68235 * 249.19910 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5852 0.0027 11 6 1.5651 -4.8754 0.0044 12 6 2.6480 -5.9562 0.0047 13 7 3.4089 -5.8866 1.2593 14 6 4.4597 -6.9125 1.2954 15 6 5.2175 -6.8099 2.5939 16 8 4.9121 -5.9656 3.4092 17 7 6.2348 -7.6564 2.8491 18 6 6.6226 -8.6889 1.8748 19 6 6.7006 -10.0356 2.6031 20 8 7.5374 -9.9015 3.7544 21 6 7.0485 -8.9767 4.7288 22 6 6.9891 -7.5759 4.1101 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5562 0.8920 26 1 0.9446 -4.9835 -0.8852 27 1 0.9452 -4.9814 0.8947 28 1 3.3210 -5.7964 -0.8377 29 1 2.1820 -6.9375 -0.0836 30 1 2.7976 -5.9673 2.0579 31 1 5.1453 -6.7597 0.4619 32 1 4.0059 -7.9003 1.2162 33 1 7.5961 -8.4445 1.4498 34 1 5.8780 -8.7436 1.0807 35 1 7.1194 -10.7876 1.9342 36 1 5.7010 -10.3403 2.9130 37 1 6.0499 -9.2767 5.0465 38 1 7.7170 -8.9674 5.5896 39 1 6.4867 -6.8930 4.7953 40 1 7.9998 -7.2196 3.9112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385210845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:43 Heat of formation + Delta-G solvation = -115.113733 kcal Electronic energy + Delta-G solvation = -20759.403723 eV Core-core repulsion = 17381.826375 eV Total energy + Delta-G solvation = -3377.577348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.55437 -38.63028 -37.02862 -35.21317 -35.00726 -32.62804 -31.98040 -29.91750 -28.27280 -26.91577 -25.47439 -24.22928 -22.30421 -22.20710 -21.54257 -19.45987 -17.59857 -16.89641 -16.54414 -16.27779 -16.08340 -15.77142 -15.50866 -15.28511 -15.07093 -14.64249 -14.25392 -14.12437 -13.59203 -13.31074 -13.12036 -12.87595 -12.47537 -12.17935 -12.05732 -11.82104 -11.71424 -11.20990 -11.14941 -10.74637 -10.71267 -10.59838 -10.46476 -9.99208 -9.81414 -8.99809 -8.88835 -8.74223 -8.26122 -8.06771 -6.03214 -4.03568 2.49288 2.52527 3.35327 3.35389 3.41356 3.49318 4.08424 4.28743 4.37343 4.43463 4.54570 4.60611 4.72888 4.81205 4.90444 5.00726 5.06810 5.15104 5.19199 5.28575 5.33473 5.36923 5.47856 5.53781 5.65650 5.98329 6.06008 6.10351 6.28607 6.61607 6.90540 7.13834 7.18711 7.47885 7.51755 7.89498 8.03235 8.24979 8.69309 9.11499 9.61028 11.08651 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.030354 B = 0.002969 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.233213 B = 9430.061938 C =10014.683202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.380 6.380 11 C 0.065 3.935 12 C 0.067 3.933 13 N -0.661 5.661 14 C 0.045 3.955 15 C 0.515 3.485 16 O -0.512 6.512 17 N -0.625 5.625 18 C 0.072 3.928 19 C 0.047 3.953 20 O -0.381 6.381 21 C 0.048 3.952 22 C 0.077 3.923 23 H 0.262 0.738 24 H 0.003 0.997 25 H 0.004 0.996 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.350 0.650 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.312 -23.791 4.452 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.013 4.013 12 C -0.062 4.062 13 N -0.294 5.294 14 C -0.088 4.088 15 C 0.303 3.697 16 O -0.385 6.385 17 N -0.362 5.362 18 C -0.051 4.051 19 C -0.031 4.031 20 O -0.299 6.299 21 C -0.029 4.029 22 C -0.046 4.046 23 H 0.072 0.928 24 H 0.020 0.980 25 H 0.022 0.978 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.169 0.831 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.758 -22.750 4.693 26.502 hybrid contribution -0.721 0.154 0.023 0.738 sum 12.036 -22.595 4.715 26.032 Atomic orbital electron populations 1.69979 1.06097 1.26905 1.51134 1.24953 0.94972 0.99429 0.95310 0.86287 0.80124 0.82629 0.77507 1.19438 1.20942 1.20875 1.21119 0.94179 0.89346 1.50015 0.91439 1.20194 0.88857 0.83933 0.95126 1.87970 1.34623 1.12302 1.95016 1.22209 0.93706 0.86387 0.99032 1.22023 0.95768 0.95944 0.92446 1.60000 1.16274 1.48118 1.04996 1.21822 0.96252 0.94840 0.95842 1.20760 0.79671 0.80312 0.88935 1.90754 1.65832 1.33947 1.47938 1.48173 1.34319 1.34524 1.19227 1.22448 1.02412 0.88110 0.92135 1.22987 0.95576 0.96393 0.88123 1.87970 1.48879 1.62700 1.30330 1.23005 1.00349 0.88110 0.91441 1.22248 0.97216 0.98341 0.86748 0.92833 0.97969 0.97844 0.93960 0.94648 0.90169 0.94706 0.83069 0.88032 0.92927 0.90221 0.88612 0.87506 0.92587 0.92598 0.87511 0.87885 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.29 55.43 0.74 -27.08 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.70 29.54 -169.99 -5.02 17.68 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.51 -15.66 9.43 -34.44 -0.32 -15.98 16 8 H 0.07 2.09 7.81 -52.48 -0.41 1.68 16 9 C 0.19 5.53 5.69 36.01 0.20 5.74 16 10 O -0.38 -9.62 10.27 -35.23 -0.36 -9.98 16 11 C 0.06 1.22 6.22 37.16 0.23 1.45 16 12 C 0.07 0.98 6.07 -3.83 -0.02 0.95 16 13 N -0.66 -10.32 6.07 -115.07 -0.70 -11.02 16 14 C 0.04 0.51 4.54 -4.97 -0.02 0.49 16 15 C 0.52 6.83 7.75 -10.98 -0.09 6.74 16 16 O -0.51 -9.17 15.67 5.56 0.09 -9.08 16 17 N -0.62 -6.24 3.02 -172.29 -0.52 -6.76 16 18 C 0.07 0.47 6.54 -3.52 -0.02 0.45 16 19 C 0.05 0.28 6.98 37.31 0.26 0.54 16 20 O -0.38 -3.14 10.74 -35.23 -0.38 -3.52 16 21 C 0.05 0.35 6.98 37.29 0.26 0.61 16 22 C 0.08 0.71 6.64 -3.55 -0.02 0.68 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 25 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 31 H 0.10 1.04 8.01 -51.93 -0.42 0.62 16 32 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.45 6.05 -51.93 -0.31 0.14 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 1.09 7.08 -51.93 -0.37 0.72 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -37.13 333.29 -7.22 -44.35 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.45 Total: -2.79 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 0.36 Total: 3.19 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.48 Total: -44.86 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.65 Total: -22.58 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.13 -7.22 -44.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385210845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.763 kcal (2) G-P(sol) polarization free energy of solvation -37.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds