Wall clock time and date at job start Mon Mar 30 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99918 * 2 1 4 4 H 1.48500 * 109.46630 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46899 * 299.99636 * 3 2 1 6 6 H 1.48496 * 109.47277 * 59.99926 * 3 2 1 7 7 C 1.37872 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00071 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.46748 * 180.02562 * 9 7 2 11 11 C 1.42910 * 113.99777 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47108 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47057 * 65.00532 * 12 11 10 14 14 C 1.46904 * 111.00145 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46861 * 179.97438 * 14 13 12 16 16 O 1.21276 * 120.00509 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99389 * 180.02562 * 15 14 13 18 18 C 1.47164 * 120.94464 * 359.97438 * 17 15 14 19 19 C 1.53300 * 108.37481 * 230.47489 * 18 17 15 20 20 O 1.42961 * 109.26618 * 307.77372 * 19 18 17 21 21 C 1.42967 * 114.16831 * 62.55217 * 20 19 18 22 22 C 1.47157 * 120.97899 * 180.02562 * 17 15 14 23 23 H 0.97002 * 119.99909 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46982 * 60.00174 * 9 7 2 25 25 H 1.09003 * 109.46742 * 300.00236 * 9 7 2 26 26 H 1.08999 * 109.46769 * 59.99782 * 11 10 9 27 27 H 1.09001 * 109.47176 * 300.00231 * 11 10 9 28 28 H 1.08995 * 109.47288 * 305.00497 * 12 11 10 29 29 H 1.08999 * 109.47062 * 185.00118 * 12 11 10 30 30 H 1.00900 * 111.00325 * 56.03868 * 13 12 11 31 31 H 1.09000 * 109.46530 * 60.00089 * 14 13 12 32 32 H 1.08994 * 109.47051 * 300.00147 * 14 13 12 33 33 H 1.08996 * 109.64217 * 110.78153 * 18 17 15 34 34 H 1.08999 * 109.72598 * 350.21805 * 18 17 15 35 35 H 1.09002 * 109.51290 * 187.82368 * 19 18 17 36 36 H 1.08997 * 109.51158 * 67.72466 * 19 18 17 37 37 H 1.09005 * 109.50496 * 57.34540 * 21 20 19 38 38 H 1.08995 * 109.51193 * 177.44508 * 21 20 19 39 39 H 1.09004 * 109.67827 * 9.75528 * 22 17 15 40 40 H 1.09000 * 109.68235 * 249.19910 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5852 0.0027 11 6 1.5651 -4.8754 0.0044 12 6 2.6480 -5.9562 0.0047 13 7 3.4089 -5.8866 1.2593 14 6 4.4597 -6.9125 1.2954 15 6 5.2175 -6.8099 2.5939 16 8 4.9121 -5.9656 3.4092 17 7 6.2348 -7.6564 2.8491 18 6 6.6226 -8.6889 1.8748 19 6 6.7006 -10.0356 2.6031 20 8 7.5374 -9.9015 3.7544 21 6 7.0485 -8.9767 4.7288 22 6 6.9891 -7.5759 4.1101 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5562 0.8920 26 1 0.9446 -4.9835 -0.8852 27 1 0.9452 -4.9814 0.8947 28 1 3.3210 -5.7964 -0.8377 29 1 2.1820 -6.9375 -0.0836 30 1 2.7976 -5.9673 2.0579 31 1 5.1453 -6.7597 0.4619 32 1 4.0059 -7.9003 1.2162 33 1 7.5961 -8.4445 1.4498 34 1 5.8780 -8.7436 1.0807 35 1 7.1194 -10.7876 1.9342 36 1 5.7010 -10.3403 2.9130 37 1 6.0499 -9.2767 5.0465 38 1 7.7170 -8.9674 5.5896 39 1 6.4867 -6.8930 4.7953 40 1 7.9998 -7.2196 3.9112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385210845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:43 Heat of formation + Delta-G solvation = -145.440961 kcal Electronic energy + Delta-G solvation = -20760.718811 eV Core-core repulsion = 17381.826375 eV Total energy + Delta-G solvation = -3378.892436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36941 -39.44021 -38.71196 -36.56055 -35.83500 -34.86300 -32.63460 -31.18075 -29.41560 -28.66516 -26.54679 -24.90426 -24.47154 -23.02561 -22.81063 -20.25518 -18.72619 -18.38580 -17.75095 -17.51411 -17.13976 -16.84320 -16.66916 -16.41908 -16.06867 -15.96878 -15.60419 -15.17815 -14.93289 -14.78829 -14.29964 -13.90512 -13.64199 -13.42586 -13.11349 -13.02611 -12.82835 -12.73818 -12.57735 -12.35302 -12.29183 -11.83799 -11.75210 -11.25422 -11.24796 -10.88249 -10.84768 -10.18644 -9.66498 -9.29805 -8.32649 -6.44308 1.38214 1.40455 1.52814 1.55412 1.74933 2.35064 2.85508 3.00711 3.12486 3.27166 3.50449 3.73551 3.97281 4.08992 4.09795 4.19184 4.23152 4.27123 4.34874 4.43907 4.47998 4.57526 4.63790 4.67761 4.74232 4.81940 4.83886 4.92457 4.99288 5.19268 5.34500 5.55383 5.93230 5.98130 6.08925 6.23413 6.35751 6.57521 6.87172 7.09613 7.28014 8.80071 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.030354 B = 0.002969 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.233213 B = 9430.061938 C =10014.683202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.208 3.792 10 O -0.399 6.399 11 C 0.050 3.950 12 C 0.079 3.921 13 N -0.697 5.697 14 C 0.050 3.950 15 C 0.509 3.491 16 O -0.573 6.573 17 N -0.620 5.620 18 C 0.067 3.933 19 C 0.044 3.956 20 O -0.395 6.395 21 C 0.056 3.944 22 C 0.072 3.928 23 H 0.271 0.729 24 H -0.012 1.012 25 H -0.020 1.020 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.343 0.657 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.125 0.875 39 H 0.082 0.918 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.458 -25.114 3.496 28.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.133 3.867 10 O -0.319 6.319 11 C -0.027 4.027 12 C -0.049 4.049 13 N -0.331 5.331 14 C -0.081 4.081 15 C 0.298 3.702 16 O -0.452 6.452 17 N -0.356 5.356 18 C -0.055 4.055 19 C -0.033 4.033 20 O -0.314 6.314 21 C -0.021 4.021 22 C -0.051 4.051 23 H 0.080 0.920 24 H 0.006 0.994 25 H -0.002 1.002 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.162 0.838 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.142 0.858 39 H 0.100 0.900 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.930 -24.148 3.710 28.124 hybrid contribution -1.074 0.428 0.316 1.198 sum 12.856 -23.721 4.025 27.279 Atomic orbital electron populations 1.70074 1.07680 1.28559 1.50751 1.25971 0.96020 1.03392 0.93946 0.85136 0.78543 0.77301 0.78409 1.19131 1.19178 1.19662 1.21423 0.93959 0.91111 1.51927 0.92481 1.19794 0.88657 0.85020 0.93199 1.87918 1.34803 1.14090 1.95075 1.22658 0.95790 0.84632 0.99601 1.21945 0.94718 0.96086 0.92153 1.59919 1.17228 1.50965 1.04985 1.21895 0.95376 0.95737 0.95124 1.21195 0.80117 0.79871 0.89041 1.90726 1.67828 1.36701 1.49902 1.48288 1.33067 1.34262 1.19956 1.22762 1.03522 0.87243 0.91966 1.23192 0.95803 0.96528 0.87755 1.87956 1.49731 1.62591 1.31089 1.22979 1.00794 0.86609 0.91734 1.22322 0.96902 0.99372 0.86474 0.92024 0.99402 1.00215 0.92635 0.94742 0.89920 0.90072 0.83820 0.86470 0.88767 0.89452 0.86273 0.84879 0.92275 0.92781 0.85762 0.90004 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 2 C 0.00 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.98 46.54 29.54 68.60 2.03 48.56 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.55 -34.51 9.43 25.60 0.24 -34.27 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.21 12.38 5.69 71.24 0.41 12.78 16 10 O -0.40 -20.72 10.27 -148.98 -1.53 -22.25 16 11 C 0.05 1.89 6.22 71.98 0.45 2.34 16 12 C 0.08 2.15 6.07 86.30 0.52 2.68 16 13 N -0.70 -21.21 6.07 -517.96 -3.15 -24.36 16 14 C 0.05 1.04 4.54 85.56 0.39 1.42 16 15 C 0.51 13.27 7.75 87.66 0.68 13.95 16 16 O -0.57 -21.43 15.67 -3.02 -0.05 -21.47 16 17 N -0.62 -11.69 3.02 -817.38 -2.47 -14.16 16 18 C 0.07 0.68 6.54 86.35 0.56 1.24 16 19 C 0.04 0.39 6.98 72.08 0.50 0.89 16 20 O -0.40 -5.69 10.74 -148.98 -1.60 -7.29 16 21 C 0.06 0.76 6.98 72.07 0.50 1.26 16 22 C 0.07 1.31 6.64 86.34 0.57 1.88 16 23 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 24 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 25 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.34 10.95 8.43 -89.69 -0.76 10.19 16 31 H 0.12 2.05 8.01 -2.39 -0.02 2.03 16 32 H 0.09 1.18 7.66 -2.39 -0.02 1.17 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.12 0.64 6.05 -2.39 -0.01 0.62 16 35 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.84 7.08 -2.38 -0.02 1.83 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -83.25 333.29 -0.92 -84.17 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.27 Total: 9.51 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 5.29 Total: 4.94 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -5.33 Total: -96.17 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -3.18 Total: -51.01 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -83.25 -0.92 -84.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385210845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.272 kcal (2) G-P(sol) polarization free energy of solvation -83.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds