Wall clock time and date at job start Mon Mar 30 2020 05:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99663 * 2 1 4 4 H 1.48497 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47320 * 300.00470 * 3 2 1 6 6 H 1.48496 * 109.46906 * 60.00908 * 3 2 1 7 7 C 1.37873 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99984 * 0.26530 * 7 2 1 10 10 O 1.42898 * 109.47426 * 179.72703 * 9 7 2 11 11 C 1.42898 * 114.00253 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47061 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47580 * 64.99928 * 12 11 10 14 14 C 1.46897 * 111.00159 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.50310 * 324.99600 * 14 13 12 16 16 C 1.53124 * 109.50180 * 85.07750 * 14 13 12 17 17 C 1.53119 * 109.15542 * 177.59295 * 16 14 13 18 18 C 1.53038 * 109.28578 * 302.34412 * 17 16 14 19 19 N 1.46849 * 109.51887 * 59.17982 * 18 17 16 20 20 C 1.46897 * 110.99695 * 174.16582 * 19 18 17 21 21 C 1.53007 * 109.46928 * 195.89440 * 20 19 18 22 22 O 1.42901 * 109.47173 * 64.17121 * 21 20 19 23 23 C 1.46851 * 111.23163 * 298.27956 * 19 18 17 24 24 H 0.96998 * 120.00144 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47437 * 299.73354 * 9 7 2 26 26 H 1.09004 * 109.46533 * 59.73273 * 9 7 2 27 27 H 1.09000 * 109.47093 * 300.00260 * 11 10 9 28 28 H 1.08995 * 109.47283 * 60.00182 * 11 10 9 29 29 H 1.08997 * 109.47214 * 184.99881 * 12 11 10 30 30 H 1.09005 * 109.47094 * 304.99544 * 12 11 10 31 31 H 1.00902 * 110.99395 * 303.95521 * 13 12 11 32 32 H 1.08990 * 109.52247 * 297.49683 * 16 14 13 33 33 H 1.09001 * 109.52236 * 57.62895 * 16 14 13 34 34 H 1.09004 * 109.50393 * 62.29221 * 17 16 14 35 35 H 1.09005 * 109.50312 * 182.40420 * 17 16 14 36 36 H 1.08997 * 109.46443 * 179.19647 * 18 17 16 37 37 H 1.09005 * 109.45777 * 299.16957 * 18 17 16 38 38 H 1.09000 * 109.46961 * 315.89078 * 20 19 18 39 39 H 1.08999 * 109.47198 * 75.89354 * 20 19 18 40 40 H 1.08997 * 109.46841 * 184.17223 * 21 20 19 41 41 H 1.08996 * 109.46875 * 304.17289 * 21 20 19 42 42 H 0.96698 * 114.00139 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.43297 * 301.68874 * 23 19 18 44 44 H 1.09004 * 109.49440 * 181.71709 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0072 10 8 2.1798 -3.5852 -0.0129 11 6 1.5653 -4.8753 -0.0200 12 6 2.6484 -5.9560 -0.0250 13 7 3.4077 -5.8942 1.2310 14 6 4.4584 -6.9203 1.2620 15 1 4.1062 -7.8173 0.7527 16 6 5.7109 -6.3909 0.5578 17 6 6.8200 -7.4427 0.6472 18 6 7.0935 -7.7651 2.1180 19 7 5.8654 -8.2682 2.7466 20 6 6.1238 -8.7180 4.1210 21 6 4.9572 -9.5832 4.6022 22 8 4.8829 -10.7679 3.8066 23 6 4.7997 -7.2584 2.7150 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5615 0.8825 26 1 0.6245 -2.5523 -0.8975 27 1 0.9450 -4.9872 0.8692 28 1 0.9455 -4.9776 -0.9107 29 1 2.1825 -6.9368 -0.1200 30 1 3.3224 -5.7910 -0.8656 31 1 3.7961 -4.9739 1.3737 32 1 5.4828 -6.1901 -0.4889 33 1 6.0397 -5.4713 1.0419 34 1 6.5054 -8.3483 0.1285 35 1 7.7277 -7.0546 0.1849 36 1 7.8729 -8.5242 2.1846 37 1 7.4213 -6.8619 2.6329 38 1 7.0436 -9.3023 4.1452 39 1 6.2266 -7.8511 4.7737 40 1 5.1133 -9.8556 5.6460 41 1 4.0267 -9.0234 4.5080 42 1 4.1641 -11.3647 4.0560 43 1 5.1379 -6.3580 3.2276 44 1 3.9132 -7.6493 3.2147 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385282701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:02 Heat of formation + Delta-G solvation = -102.647602 kcal Electronic energy + Delta-G solvation = -21334.106514 eV Core-core repulsion = 18092.902833 eV Total energy + Delta-G solvation = -3241.203682 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.48886 -37.33024 -36.72365 -35.23503 -33.03476 -32.58557 -30.42307 -28.91080 -27.60321 -26.29239 -24.39170 -22.41115 -22.26085 -21.62170 -21.17006 -19.86414 -17.63496 -16.63258 -16.35697 -15.69179 -15.57977 -15.16378 -14.91996 -14.55567 -14.45192 -14.18293 -13.95563 -13.87472 -13.28583 -13.06235 -12.88893 -12.47330 -12.35594 -12.16924 -11.68948 -11.44160 -11.33806 -11.23758 -10.94054 -10.81762 -10.77406 -10.64049 -10.51007 -10.36410 -10.12378 -9.98561 -9.09201 -8.82564 -8.41402 -8.16718 -8.12591 -6.11241 -4.12923 3.28355 3.34787 3.40916 3.60389 4.08232 4.34605 4.43392 4.73633 4.80692 4.89560 4.96090 4.96719 4.99963 5.17962 5.21743 5.25275 5.35716 5.38813 5.48014 5.52487 5.59152 5.64417 5.67588 5.76329 5.83440 5.87447 5.95472 6.07498 6.16776 6.24182 6.28853 6.39870 6.94302 6.96699 7.12164 7.30151 7.44506 7.48912 7.69163 7.79018 8.15504 8.58343 9.00705 9.52000 11.00339 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.025507 B = 0.003108 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.469775 B = 9007.088737 C = 9253.075982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.399 6.399 11 C 0.062 3.938 12 C 0.069 3.931 13 N -0.684 5.684 14 C 0.093 3.907 15 H 0.082 0.918 16 C -0.152 4.152 17 C -0.111 4.111 18 C 0.056 3.944 19 N -0.530 5.530 20 C 0.056 3.944 21 C 0.080 3.920 22 O -0.560 6.560 23 C 0.067 3.933 24 H 0.263 0.737 25 H 0.006 0.994 26 H 0.004 0.996 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.355 0.645 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.373 0.627 43 H 0.033 0.967 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.145 -19.353 6.793 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.319 6.319 11 C -0.016 4.016 12 C -0.061 4.061 13 N -0.316 5.316 14 C -0.017 4.017 15 H 0.100 0.900 16 C -0.192 4.192 17 C -0.150 4.150 18 C -0.072 4.072 19 N -0.255 5.255 20 C -0.072 4.072 21 C 0.002 3.998 22 O -0.364 6.364 23 C -0.062 4.062 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.175 0.825 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.219 0.781 43 H 0.051 0.949 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.081 -19.684 6.581 23.528 hybrid contribution 0.404 1.789 0.140 1.840 sum 11.486 -17.895 6.720 22.301 Atomic orbital electron populations 1.69972 1.06097 1.27033 1.50638 1.24954 0.94972 0.99434 0.95194 0.86296 0.79986 0.82665 0.77625 1.19531 1.20858 1.20826 1.21089 0.94013 0.89418 1.50663 0.91609 1.20173 0.88709 0.83486 0.95364 1.87784 1.35778 1.13153 1.95228 1.22306 0.94581 0.85253 0.99485 1.21953 0.95610 0.97946 0.90565 1.60438 1.26686 1.09072 1.35386 1.21491 0.89749 0.95529 0.94969 0.90001 1.22347 0.96587 0.98722 1.01504 1.21505 0.98470 0.99343 0.95646 1.22097 0.91679 0.98199 0.95183 1.61783 1.07639 1.38735 1.17326 1.22103 0.98540 0.97323 0.89261 1.22194 0.98292 0.86567 0.92744 1.86586 1.56115 1.33048 1.60621 1.22061 0.94524 0.92666 0.96901 0.92710 0.97643 0.97840 0.93605 0.94182 0.90700 0.94731 0.82517 0.91646 0.91876 0.91110 0.91650 0.90956 0.95086 0.90278 0.93383 0.93690 0.93329 0.78139 0.94899 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -15.17 9.43 -34.44 -0.32 -15.50 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.44 5.69 36.01 0.20 5.65 16 10 O -0.40 -9.58 9.85 -35.23 -0.35 -9.93 16 11 C 0.06 1.16 6.28 37.16 0.23 1.40 16 12 C 0.07 1.06 5.90 -3.83 -0.02 1.03 16 13 N -0.68 -10.31 6.25 -106.64 -0.67 -10.98 16 14 C 0.09 1.19 2.63 -67.63 -0.18 1.01 16 15 H 0.08 1.09 7.80 -51.93 -0.41 0.68 16 16 C -0.15 -1.84 5.26 -26.61 -0.14 -1.98 16 17 C -0.11 -1.15 6.09 -26.65 -0.16 -1.31 16 18 C 0.06 0.57 5.45 -3.83 -0.02 0.55 16 19 N -0.53 -5.84 4.55 -234.66 -1.07 -6.91 16 20 C 0.06 0.52 5.37 -3.82 -0.02 0.50 16 21 C 0.08 0.68 7.19 37.16 0.27 0.95 16 22 O -0.56 -5.38 13.59 -35.23 -0.48 -5.86 16 23 C 0.07 0.80 4.91 -3.83 -0.02 0.78 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.00 8.06 -51.93 -0.42 0.59 16 30 H 0.03 0.54 7.50 -51.93 -0.39 0.15 16 31 H 0.35 5.97 8.01 -39.29 -0.31 5.65 16 32 H 0.06 0.83 7.53 -51.93 -0.39 0.44 16 33 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.66 7.96 -51.93 -0.41 0.25 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.70 7.87 -51.93 -0.41 0.30 16 39 H 0.05 0.41 8.06 -51.93 -0.42 -0.01 16 40 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.05 0.42 6.50 -51.93 -0.34 0.09 16 42 H 0.37 1.96 9.12 45.56 0.42 2.37 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.98 6.42 -51.93 -0.33 0.65 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -32.24 350.35 -9.03 -41.27 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.18 Total: 1.96 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -0.28 Total: -5.40 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -1.00 Total: -44.19 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.83 Total: -15.79 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.24 -9.03 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385282701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.381 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds