Wall clock time and date at job start Mon Mar 30 2020 05:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99663 * 2 1 4 4 H 1.48497 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47320 * 300.00470 * 3 2 1 6 6 H 1.48496 * 109.46906 * 60.00908 * 3 2 1 7 7 C 1.37873 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99984 * 0.26530 * 7 2 1 10 10 O 1.42898 * 109.47426 * 179.72703 * 9 7 2 11 11 C 1.42898 * 114.00253 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47061 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47580 * 64.99928 * 12 11 10 14 14 C 1.46897 * 111.00159 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.50310 * 324.99600 * 14 13 12 16 16 C 1.53124 * 109.50180 * 85.07750 * 14 13 12 17 17 C 1.53119 * 109.15542 * 177.59295 * 16 14 13 18 18 C 1.53038 * 109.28578 * 302.34412 * 17 16 14 19 19 N 1.46849 * 109.51887 * 59.17982 * 18 17 16 20 20 C 1.46897 * 110.99695 * 174.16582 * 19 18 17 21 21 C 1.53007 * 109.46928 * 195.89440 * 20 19 18 22 22 O 1.42901 * 109.47173 * 64.17121 * 21 20 19 23 23 C 1.46851 * 111.23163 * 298.27956 * 19 18 17 24 24 H 0.96998 * 120.00144 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47437 * 299.73354 * 9 7 2 26 26 H 1.09004 * 109.46533 * 59.73273 * 9 7 2 27 27 H 1.09000 * 109.47093 * 300.00260 * 11 10 9 28 28 H 1.08995 * 109.47283 * 60.00182 * 11 10 9 29 29 H 1.08997 * 109.47214 * 184.99881 * 12 11 10 30 30 H 1.09005 * 109.47094 * 304.99544 * 12 11 10 31 31 H 1.00902 * 110.99395 * 303.95521 * 13 12 11 32 32 H 1.08990 * 109.52247 * 297.49683 * 16 14 13 33 33 H 1.09001 * 109.52236 * 57.62895 * 16 14 13 34 34 H 1.09004 * 109.50393 * 62.29221 * 17 16 14 35 35 H 1.09005 * 109.50312 * 182.40420 * 17 16 14 36 36 H 1.08997 * 109.46443 * 179.19647 * 18 17 16 37 37 H 1.09005 * 109.45777 * 299.16957 * 18 17 16 38 38 H 1.09000 * 109.46961 * 315.89078 * 20 19 18 39 39 H 1.08999 * 109.47198 * 75.89354 * 20 19 18 40 40 H 1.08997 * 109.46841 * 184.17223 * 21 20 19 41 41 H 1.08996 * 109.46875 * 304.17289 * 21 20 19 42 42 H 0.96698 * 114.00139 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.43297 * 301.68874 * 23 19 18 44 44 H 1.09004 * 109.49440 * 181.71709 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0072 10 8 2.1798 -3.5852 -0.0129 11 6 1.5653 -4.8753 -0.0200 12 6 2.6484 -5.9560 -0.0250 13 7 3.4077 -5.8942 1.2310 14 6 4.4584 -6.9203 1.2620 15 1 4.1062 -7.8173 0.7527 16 6 5.7109 -6.3909 0.5578 17 6 6.8200 -7.4427 0.6472 18 6 7.0935 -7.7651 2.1180 19 7 5.8654 -8.2682 2.7466 20 6 6.1238 -8.7180 4.1210 21 6 4.9572 -9.5832 4.6022 22 8 4.8829 -10.7679 3.8066 23 6 4.7997 -7.2584 2.7150 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5615 0.8825 26 1 0.6245 -2.5523 -0.8975 27 1 0.9450 -4.9872 0.8692 28 1 0.9455 -4.9776 -0.9107 29 1 2.1825 -6.9368 -0.1200 30 1 3.3224 -5.7910 -0.8656 31 1 3.7961 -4.9739 1.3737 32 1 5.4828 -6.1901 -0.4889 33 1 6.0397 -5.4713 1.0419 34 1 6.5054 -8.3483 0.1285 35 1 7.7277 -7.0546 0.1849 36 1 7.8729 -8.5242 2.1846 37 1 7.4213 -6.8619 2.6329 38 1 7.0436 -9.3023 4.1452 39 1 6.2266 -7.8511 4.7737 40 1 5.1133 -9.8556 5.6460 41 1 4.0267 -9.0234 4.5080 42 1 4.1641 -11.3647 4.0560 43 1 5.1379 -6.3580 3.2276 44 1 3.9132 -7.6493 3.2147 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385282701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:02 Heat of formation + Delta-G solvation = -129.001671 kcal Electronic energy + Delta-G solvation = -21335.249313 eV Core-core repulsion = 18092.902833 eV Total energy + Delta-G solvation = -3242.346480 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41206 -38.81635 -37.73869 -36.40413 -34.92002 -33.80834 -31.65957 -29.74149 -29.39397 -27.84962 -25.23467 -24.53825 -23.36819 -22.71010 -22.16761 -20.81828 -18.65845 -18.30208 -17.56330 -17.34334 -16.95463 -16.41897 -16.16048 -16.00251 -15.53293 -15.32876 -15.16791 -14.93918 -14.66265 -14.19544 -13.95530 -13.69745 -13.46084 -13.33279 -13.07469 -13.05305 -12.77663 -12.65272 -12.39193 -12.23685 -12.11091 -11.91399 -11.78942 -11.46808 -11.31690 -11.26443 -10.88482 -10.77769 -10.23850 -9.35976 -9.20744 -8.33121 -6.45542 1.39281 1.40735 1.55241 2.33719 2.72228 3.00746 3.20924 3.36439 3.51063 3.82656 3.84839 4.02052 4.17153 4.22724 4.29434 4.32095 4.38094 4.45874 4.52203 4.54713 4.59546 4.64629 4.75558 4.77742 4.80227 4.85785 4.88089 4.93606 4.98441 5.00248 5.07387 5.17208 5.22781 5.34714 5.53978 5.94840 6.02155 6.14298 6.21628 6.39224 6.52383 6.80914 7.01809 7.26485 8.79507 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.025507 B = 0.003108 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.469775 B = 9007.088737 C = 9253.075982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.211 3.789 10 O -0.408 6.408 11 C 0.055 3.945 12 C 0.079 3.921 13 N -0.690 5.690 14 C 0.098 3.902 15 H 0.081 0.919 16 C -0.149 4.149 17 C -0.106 4.106 18 C 0.055 3.945 19 N -0.538 5.538 20 C 0.051 3.949 21 C 0.081 3.919 22 O -0.582 6.582 23 C 0.074 3.926 24 H 0.271 0.729 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.033 0.967 31 H 0.343 0.657 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.030 0.970 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.390 0.610 43 H 0.024 0.976 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.437 -19.649 7.105 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.136 3.864 10 O -0.328 6.328 11 C -0.022 4.022 12 C -0.050 4.050 13 N -0.321 5.321 14 C -0.013 4.013 15 H 0.099 0.901 16 C -0.188 4.188 17 C -0.144 4.144 18 C -0.072 4.072 19 N -0.263 5.263 20 C -0.077 4.077 21 C 0.003 3.997 22 O -0.389 6.389 23 C -0.054 4.054 24 H 0.080 0.920 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.052 0.948 31 H 0.161 0.839 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.048 0.952 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.238 0.762 43 H 0.042 0.958 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.367 -20.028 6.899 24.529 hybrid contribution -0.040 1.767 0.057 1.769 sum 12.327 -18.261 6.956 23.104 Atomic orbital electron populations 1.70078 1.07780 1.28596 1.50569 1.25976 0.95967 1.03438 0.93952 0.85127 0.78645 0.77301 0.78266 1.18803 1.19682 1.19652 1.21409 0.94074 0.90810 1.52101 0.91988 1.19793 0.88577 0.84641 0.93372 1.87750 1.35518 1.14345 1.95212 1.22604 0.96056 0.83819 0.99768 1.21901 0.94729 0.97640 0.90770 1.60472 1.27644 1.08866 1.35133 1.21485 0.89407 0.94607 0.95760 0.90080 1.22283 0.96918 0.98903 1.00680 1.21475 0.98276 0.98587 0.96059 1.22143 0.91680 0.98590 0.94809 1.61813 1.07736 1.38148 1.18614 1.22218 0.99224 0.97786 0.88444 1.22223 0.97621 0.86183 0.93714 1.86528 1.57276 1.33683 1.61388 1.21920 0.94905 0.92603 0.95974 0.92038 0.99758 0.99741 0.93840 0.93327 0.88004 0.94827 0.83871 0.92403 0.92840 0.91235 0.90288 0.89638 0.95189 0.89748 0.92710 0.91525 0.93941 0.76182 0.95796 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 2 C 0.01 0.29 5.46 84.65 0.46 0.76 16 3 Si 0.98 44.56 29.54 68.60 2.03 46.59 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -32.78 9.43 25.60 0.24 -32.54 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.21 12.04 5.69 71.24 0.41 12.44 16 10 O -0.41 -19.99 9.85 -148.98 -1.47 -21.45 16 11 C 0.05 2.08 6.28 71.98 0.45 2.53 16 12 C 0.08 2.37 5.90 86.30 0.51 2.88 16 13 N -0.69 -20.66 6.25 -491.30 -3.07 -23.73 16 14 C 0.10 2.43 2.63 44.97 0.12 2.55 16 15 H 0.08 2.05 7.80 -2.39 -0.02 2.04 16 16 C -0.15 -3.49 5.26 30.68 0.16 -3.33 16 17 C -0.11 -2.02 6.09 30.65 0.19 -1.84 16 18 C 0.06 1.04 5.45 86.33 0.47 1.51 16 19 N -0.54 -11.15 4.55 -896.34 -4.08 -15.23 16 20 C 0.05 0.87 5.37 86.31 0.46 1.33 16 21 C 0.08 1.24 7.19 71.98 0.52 1.75 16 22 O -0.58 -10.28 13.59 -148.98 -2.03 -12.30 16 23 C 0.07 1.73 4.91 86.33 0.42 2.15 16 24 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 25 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 26 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.10 2.55 8.06 -2.39 -0.02 2.53 16 30 H 0.03 1.03 7.50 -2.38 -0.02 1.01 16 31 H 0.34 11.69 8.01 -89.69 -0.72 10.97 16 32 H 0.06 1.43 7.53 -2.39 -0.02 1.42 16 33 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 34 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.09 1.39 7.96 -2.39 -0.02 1.37 16 37 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.08 1.35 7.87 -2.39 -0.02 1.33 16 39 H 0.05 0.86 8.06 -2.39 -0.02 0.84 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.04 0.69 6.50 -2.39 -0.02 0.68 16 42 H 0.39 3.51 9.12 -74.06 -0.68 2.84 16 43 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.08 1.83 6.42 -2.39 -0.02 1.81 16 Total: -1.00 -68.54 350.35 -4.34 -72.88 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.42 Total: 19.17 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 4.41 Total: -9.81 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -6.86 Total: -95.08 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -3.49 Total: -33.76 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -68.54 -4.34 -72.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385282701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.118 kcal (2) G-P(sol) polarization free energy of solvation -68.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds